NO03G05280.1, NO03G05280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05280.1
Unique NameNO03G05280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1732
Alignment locationchr3:1505674..1507405 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1505674..1507405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G05280.1 vs.
Match: EWM29967.1 (Protein of unknown function DUF819 [Nannochloropsis gaditana])

HSP 1 Score: 597.0 bits (1538), Expect = 5.200e-167
Identity = 339/474 (71.52%), Postives = 376/474 (79.32%), Query Frame = 0 
Query:   25 VLPSGSYLPPANTLVTPMVPFYPTTTAITTLVLRRRAAPFP--SIATTNTVATRLAVATG-----TNGAIPFAATLTTGLHASPWWVWSMLLLASTAGVAAERSKVGAALSSPLITMAVALVVCNLGLLPAVAPAYATVNKFLVPLAIPLLLLDANLFKVLTQTGRLLRSFALGSIGTVLGTLVAAWLVPLRNLGVDGKEGWTIAAALASRHIGGAVNFVAVSETLATSAELTAAGIAADNLVVSFYFGLLFWLARRILPEEEEEEGQGGGVAGEGEKEEWVGRARVIEAADAPALGYLKALSLSCVLCMVGTWVGEGLLSGAISSLPIISLLSVTIATLFPRACASITEPAGHLAVILMNLFFSVTGAQGKLGKVLATAPRLFLFSAVQLFVHLAFLLGAGRGLFRLPFKELLIASNANVGGPTTAAAMAGSKKWKSLVLPGILTGILGYASATFIGLVLGRRVLAKMMMSSV 492
            ++ S +++PP   L+       P+    TT   +   AP P  +I+   + +T+   A G      +GAIPF ATL   +  SPWWVWSMLLLAST GVAAER+K+GAALSSPLITMAVALV CNLG LP+ APAY +VNKFLVPLAIPLLLLDANLFKVLTQTGRLLRSF LGSIGTVLGTL+AAW VPL +LG  GKEGW IAAALASRHIGGAVNFVAVSETL  SAELTAAGIAADNLVVSFYFGLLFWLAR + PE+E     GGG  G     E V +A    A + P+LGYLKALSL+ +LCMVGTWV EGLL GAISS+P+ISLLSV  ATLFPRAC+S+TEPAGHLAVILMNLFFSVTGAQGKL +VL TAPRLFL SAVQL  HL FLLGAGRGL RLP KELL+ASNANVGGPTTAAAMAGSK+WKSLVLPGILTGILGYASATFIGL LGR VLAK++   V
Sbjct:   19 IMTSDAFVPPRPRLMPIEHLTGPSIARPTTYATKGGPAPLPFRAISDPASFSTKRLAAMGCTQHVASGAIPFTATLMASMQTSPWWVWSMLLLASTTGVAAERTKIGAALSSPLITMAVALVACNLGFLPSAAPAYTSVNKFLVPLAIPLLLLDANLFKVLTQTGRLLRSFVLGSIGTVLGTLIAAWFVPLGSLGAAGKEGWMIAAALASRHIGGAVNFVAVSETLGMSAELTAAGIAADNLVVSFYFGLLFWLARDLEPEDEVLHANGGGGGGPKGTREPVEQA-TWSATEPPSLGYLKALSLASLLCMVGTWVSEGLLQGAISSIPVISLLSVATATLFPRACSSVTEPAGHLAVILMNLFFSVTGAQGKLSQVLVTAPRLFLLSAVQLVFHLTFLLGAGRGLLRLPLKELLVASNANVGGPTTAAAMAGSKRWKSLVLPGILTGILGYASATFIGLALGRSVLAKIVTRGV 491
The following BLAST results are available for this feature:
BLAST of NO03G05280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29967.15.200e-16771.52Protein of unknown function DUF819 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05280NO03G05280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05280.1NO03G05280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05280.1.cds1NO03G05280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05280.1 ID=NO03G05280.1|Name=NO03G05280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1732bp
CACCACAGACATCCTTAGACCGCGTTGGTCCGTCTTTTTCTTCTAAACAT
TGCCGTCGCTGCTGTAGCCAACACGTACTGCTACTTGCCGTTGCTGTATC
GCCACACTTCCCCCGCCATCTTTCTTCCTATTTCAGAAACATATGAGGCC
GCCGCTCATTCCTTGCCTCGGCATCGCCACCATCGCTAGCGTTATCTCGA
CGATAAGCGCCTTTGTCTTGCCATCAGGATCCTATCTCCCGCCTGCCAAC
ACGCTTGTCACGCCCATGGTGCCTTTCTACCCTACGACGACTGCCATCAC
TACCCTTGTCCTCCGTCGTCGAGCGGCGCCCTTCCCCTCTATTGCCACGA
CCAACACCGTCGCAACCCGCCTAGCAGTAGCCACGGGTACGAATGGTGCT
ATTCCATTCGCCGCGACCTTGACGACGGGCCTGCATGCCTCGCCGTGGTG
GGTTTGGTCGATGCTTCTCCTCGCGTCAACCGCCGGTGTGGCCGCCGAAC
GCTCTAAGGTTGGAGCCGCCCTTTCATCCCCTCTTATTACCATGGCCGTA
GCCCTCGTTGTGTGCAACCTCGGCCTTCTCCCCGCCGTTGCACCCGCCTA
CGCTACTGTCAATAAGTTTCTAGTTCCTTTAGCCATTCCTCTCCTCCTTC
TCGACGCCAACCTCTTTAAAGTCCTCACCCAAACCGGTCGCTTGCTCCGT
TCCTTCGCCCTCGGCAGCATTGGCACGGTCCTTGGGACGCTTGTGGCTGC
GTGGCTTGTGCCGTTGAGGAATTTAGGGGTGGATGGAAAGGAGGGATGGA
CGATTGCGGCAGCCTTGGCCTCAAGGCATATTGGAGGAGCTGTTAATTTT
GTGGCGGTTAGCGAGACGTTGGCGACCTCTGCTGAGCTCACCGCAGCAGG
CATCGCCGCGGATAATCTGGTGGTGTCGTTCTATTTTGGTTTGCTTTTCT
GGCTGGCCCGGCGTATTTTGCCGGAGGAGGAGGAGGAAGAGGGGCAGGGC
GGAGGGGTGGCAGGGGAAGGAGAGAAAGAGGAATGGGTTGGGCGAGCCAG
GGTAATAGAAGCAGCCGACGCTCCTGCCCTTGGGTATTTGAAGGCCCTCA
GCCTGTCGTGCGTCCTTTGTATGGTTGGCACGTGGGTTGGCGAAGGGCTG
CTGAGTGGAGCTATCTCGAGTTTGCCCATCATCTCCCTCCTGTCTGTCAC
CATTGCCACTCTATTCCCTCGAGCCTGCGCGAGCATCACGGAACCCGCAG
GCCATCTCGCTGTCATCCTCATGAATCTTTTCTTCTCCGTCACTGGTGCC
CAAGGAAAATTGGGCAAGGTCTTGGCGACGGCTCCCCGTCTTTTCCTCTT
CTCCGCTGTCCAACTTTTCGTTCACCTCGCTTTCCTCCTAGGGGCGGGCA
GAGGCCTCTTTCGCCTCCCTTTCAAGGAGCTGTTGATCGCATCGAACGCC
AACGTCGGGGGCCCAACAACAGCAGCAGCCATGGCGGGGAGTAAGAAGTG
GAAGAGTCTCGTGCTGCCAGGCATACTTACGGGTATCCTAGGGTACGCCT
CAGCGACGTTCATTGGCTTGGTCCTTGGGAGGAGGGTGCTAGCGAAGATG
ATGATGAGTAGCGTGGGAGGAAGTTGAGGTTGAGGGGAAGAGGTGGCGAC
GAAACGTTTTGGATTCGTACACTAATTAGAGAAAGTGAAGAGTGACAATT
TGGGAAAAGAGAAGGAAAAGTTGAATCGGGGG
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protein sequence of NO03G05280.1

>NO03G05280.1-protein ID=NO03G05280.1-protein|Name=NO03G05280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=495bp
MRPPLIPCLGIATIASVISTISAFVLPSGSYLPPANTLVTPMVPFYPTTT
AITTLVLRRRAAPFPSIATTNTVATRLAVATGTNGAIPFAATLTTGLHAS
PWWVWSMLLLASTAGVAAERSKVGAALSSPLITMAVALVVCNLGLLPAVA
PAYATVNKFLVPLAIPLLLLDANLFKVLTQTGRLLRSFALGSIGTVLGTL
VAAWLVPLRNLGVDGKEGWTIAAALASRHIGGAVNFVAVSETLATSAELT
AAGIAADNLVVSFYFGLLFWLARRILPEEEEEEGQGGGVAGEGEKEEWVG
RARVIEAADAPALGYLKALSLSCVLCMVGTWVGEGLLSGAISSLPIISLL
SVTIATLFPRACASITEPAGHLAVILMNLFFSVTGAQGKLGKVLATAPRL
FLFSAVQLFVHLAFLLGAGRGLFRLPFKELLIASNANVGGPTTAAAMAGS
KKWKSLVLPGILTGILGYASATFIGLVLGRRVLAKMMMSSVGGS*
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mRNA from alignment at chr3:1505674..1507405+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05280.1 ID=NO03G05280.1|Name=NO03G05280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1732bp|location=Sequence derived from alignment at chr3:1505674..1507405+ (Nannochloropsis oceanica)
CACCACAGACATCCTTAGACCGCGTTGGTCCGTCTTTTTCTTCTAAACAT
TGCCGTCGCTGCTGTAGCCAACACGTACTGCTACTTGCCGTTGCTGTATC
GCCACACTTCCCCCGCCATCTTTCTTCCTATTTCAGAAACATATGAGGCC
GCCGCTCATTCCTTGCCTCGGCATCGCCACCATCGCTAGCGTTATCTCGA
CGATAAGCGCCTTTGTCTTGCCATCAGGATCCTATCTCCCGCCTGCCAAC
ACGCTTGTCACGCCCATGGTGCCTTTCTACCCTACGACGACTGCCATCAC
TACCCTTGTCCTCCGTCGTCGAGCGGCGCCCTTCCCCTCTATTGCCACGA
CCAACACCGTCGCAACCCGCCTAGCAGTAGCCACGGGTACGAATGGTGCT
ATTCCATTCGCCGCGACCTTGACGACGGGCCTGCATGCCTCGCCGTGGTG
GGTTTGGTCGATGCTTCTCCTCGCGTCAACCGCCGGTGTGGCCGCCGAAC
GCTCTAAGGTTGGAGCCGCCCTTTCATCCCCTCTTATTACCATGGCCGTA
GCCCTCGTTGTGTGCAACCTCGGCCTTCTCCCCGCCGTTGCACCCGCCTA
CGCTACTGTCAATAAGTTTCTAGTTCCTTTAGCCATTCCTCTCCTCCTTC
TCGACGCCAACCTCTTTAAAGTCCTCACCCAAACCGGTCGCTTGCTCCGT
TCCTTCGCCCTCGGCAGCATTGGCACGGTCCTTGGGACGCTTGTGGCTGC
GTGGCTTGTGCCGTTGAGGAATTTAGGGGTGGATGGAAAGGAGGGATGGA
CGATTGCGGCAGCCTTGGCCTCAAGGCATATTGGAGGAGCTGTTAATTTT
GTGGCGGTTAGCGAGACGTTGGCGACCTCTGCTGAGCTCACCGCAGCAGG
CATCGCCGCGGATAATCTGGTGGTGTCGTTCTATTTTGGTTTGCTTTTCT
GGCTGGCCCGGCGTATTTTGCCGGAGGAGGAGGAGGAAGAGGGGCAGGGC
GGAGGGGTGGCAGGGGAAGGAGAGAAAGAGGAATGGGTTGGGCGAGCCAG
GGTAATAGAAGCAGCCGACGCTCCTGCCCTTGGGTATTTGAAGGCCCTCA
GCCTGTCGTGCGTCCTTTGTATGGTTGGCACGTGGGTTGGCGAAGGGCTG
CTGAGTGGAGCTATCTCGAGTTTGCCCATCATCTCCCTCCTGTCTGTCAC
CATTGCCACTCTATTCCCTCGAGCCTGCGCGAGCATCACGGAACCCGCAG
GCCATCTCGCTGTCATCCTCATGAATCTTTTCTTCTCCGTCACTGGTGCC
CAAGGAAAATTGGGCAAGGTCTTGGCGACGGCTCCCCGTCTTTTCCTCTT
CTCCGCTGTCCAACTTTTCGTTCACCTCGCTTTCCTCCTAGGGGCGGGCA
GAGGCCTCTTTCGCCTCCCTTTCAAGGAGCTGTTGATCGCATCGAACGCC
AACGTCGGGGGCCCAACAACAGCAGCAGCCATGGCGGGGAGTAAGAAGTG
GAAGAGTCTCGTGCTGCCAGGCATACTTACGGGTATCCTAGGGTACGCCT
CAGCGACGTTCATTGGCTTGGTCCTTGGGAGGAGGGTGCTAGCGAAGATG
ATGATGAGTAGCGTGGGAGGAAGTTGAGGTTGAGGGGAAGAGGTGGCGAC
GAAACGTTTTGGATTCGTACACTAATTAGAGAAAGTGAAGAGTGACAATT
TGGGAAAAGAGAAGGAAAAGTTGAATCGGGGG
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Coding sequence (CDS) from alignment at chr3:1505674..1507405+

>NO03G05280.1 ID=NO03G05280.1|Name=NO03G05280.1|organism=Nannochloropsis oceanica|type=CDS|length=1485bp|location=Sequence derived from alignment at chr3:1505674..1507405+ (Nannochloropsis oceanica)
ATGAGGCCGCCGCTCATTCCTTGCCTCGGCATCGCCACCATCGCTAGCGT
TATCTCGACGATAAGCGCCTTTGTCTTGCCATCAGGATCCTATCTCCCGC
CTGCCAACACGCTTGTCACGCCCATGGTGCCTTTCTACCCTACGACGACT
GCCATCACTACCCTTGTCCTCCGTCGTCGAGCGGCGCCCTTCCCCTCTAT
TGCCACGACCAACACCGTCGCAACCCGCCTAGCAGTAGCCACGGGTACGA
ATGGTGCTATTCCATTCGCCGCGACCTTGACGACGGGCCTGCATGCCTCG
CCGTGGTGGGTTTGGTCGATGCTTCTCCTCGCGTCAACCGCCGGTGTGGC
CGCCGAACGCTCTAAGGTTGGAGCCGCCCTTTCATCCCCTCTTATTACCA
TGGCCGTAGCCCTCGTTGTGTGCAACCTCGGCCTTCTCCCCGCCGTTGCA
CCCGCCTACGCTACTGTCAATAAGTTTCTAGTTCCTTTAGCCATTCCTCT
CCTCCTTCTCGACGCCAACCTCTTTAAAGTCCTCACCCAAACCGGTCGCT
TGCTCCGTTCCTTCGCCCTCGGCAGCATTGGCACGGTCCTTGGGACGCTT
GTGGCTGCGTGGCTTGTGCCGTTGAGGAATTTAGGGGTGGATGGAAAGGA
GGGATGGACGATTGCGGCAGCCTTGGCCTCAAGGCATATTGGAGGAGCTG
TTAATTTTGTGGCGGTTAGCGAGACGTTGGCGACCTCTGCTGAGCTCACC
GCAGCAGGCATCGCCGCGGATAATCTGGTGGTGTCGTTCTATTTTGGTTT
GCTTTTCTGGCTGGCCCGGCGTATTTTGCCGGAGGAGGAGGAGGAAGAGG
GGCAGGGCGGAGGGGTGGCAGGGGAAGGAGAGAAAGAGGAATGGGTTGGG
CGAGCCAGGGTAATAGAAGCAGCCGACGCTCCTGCCCTTGGGTATTTGAA
GGCCCTCAGCCTGTCGTGCGTCCTTTGTATGGTTGGCACGTGGGTTGGCG
AAGGGCTGCTGAGTGGAGCTATCTCGAGTTTGCCCATCATCTCCCTCCTG
TCTGTCACCATTGCCACTCTATTCCCTCGAGCCTGCGCGAGCATCACGGA
ACCCGCAGGCCATCTCGCTGTCATCCTCATGAATCTTTTCTTCTCCGTCA
CTGGTGCCCAAGGAAAATTGGGCAAGGTCTTGGCGACGGCTCCCCGTCTT
TTCCTCTTCTCCGCTGTCCAACTTTTCGTTCACCTCGCTTTCCTCCTAGG
GGCGGGCAGAGGCCTCTTTCGCCTCCCTTTCAAGGAGCTGTTGATCGCAT
CGAACGCCAACGTCGGGGGCCCAACAACAGCAGCAGCCATGGCGGGGAGT
AAGAAGTGGAAGAGTCTCGTGCTGCCAGGCATACTTACGGGTATCCTAGG
GTACGCCTCAGCGACGTTCATTGGCTTGGTCCTTGGGAGGAGGGTGCTAG
CGAAGATGATGATGAGTAGCGTGGGAGGAAGTTGA
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Synonyms
Publications