NO03G03700.1, NO03G03700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03700.1
Unique NameNO03G03700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length867
Alignment locationchr3:1098723..1099687 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1098723..1099687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03700.1 vs.
Match: EWM29820.1 (had family hydrolase [Nannochloropsis gaditana])

HSP 1 Score: 391.0 bits (1003), Expect = 3.300e-105
Identity = 192/280 (68.57%), Postives = 225/280 (80.36%), Query Frame = 0 
Query:    7 LKFRVFVVSLVLWSYSAVAFTTKVSLKSPLSCSARIFQLHQRRTHSSSTPTMAAAPPKVKGICFDMDGTLTNSDNLHFETYRDTLLKMAPEYNSGKPLERAFYDAKLSGSANEIIVPTLLPHWERARMEELWLAKEALYRKRSVDISPLPGVLRILDWCDAQKVDYVLVTNAPRVDCIHTLHSLKLNERFDNSKIVIGEEVARPKPFPDAYNEGLRRLGLAAHECIAFEDSFSGLASAVAAGIPTVAVLTSRAEGEMTDKGAFMTIKDFEAPSLWEILEA 287
            L   V V++L     +A  F +++S+++  S              S     + +  P +KGICFDMDGTLTNSD+LHFETYRDTLLK APEYN G+PLERAFYD KLSGSANEIIVP LLPHW + RMEELWLAKEALYR+RS +ISPLPGV+R+LDWC   K+ YVLVTNAPRV+C+HTLHSLKL +RF +SKI+IG+E+ARPKPFPDAYNEGLRRLGLAA ECIAFEDSFSGLASAVAAGIPTVAVLTSR+E EM D+GAFM++KDF+ PSLW +LEA
Sbjct:   25 LALTVVVLTLRSSCVAAFCFPSRLSVRTSKSY-----------IRSRQNSVVMSISPHIKGICFDMDGTLTNSDDLHFETYRDTLLKFAPEYNDGRPLERAFYDQKLSGSANEIIVPMLLPHWPQDRMEELWLAKEALYRERSANISPLPGVIRLLDWCTENKIGYVLVTNAPRVECLHTLHSLKLKDRFHDSKIIIGQEMARPKPFPDAYNEGLRRLGLAAKECIAFEDSFSGLASAVAAGIPTVAVLTSRSEAEMIDRGAFMSVKDFDEPSLWALLEA 293
The following BLAST results are available for this feature:
BLAST of NO03G03700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29820.13.300e-10568.57had family hydrolase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03700NO03G03700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03700.1NO03G03700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03700.1.cds1NO03G03700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03700.1.cds2NO03G03700.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03700.1 ID=NO03G03700.1|Name=NO03G03700.1|organism=Nannochloropsis oceanica|type=mRNA|length=867bp
ATGGCGCAGCGCGCAGTCCTGAAATTTCGGGTCTTTGTCGTCTCTCTGGT
CCTTTGGTCCTACAGCGCGGTCGCGTTTACTACAAAAGTCTCACTAAAAT
CGCCCCTGTCGTGCTCTGCAAGAATATTCCAGCTCCACCAGCGGCGCACC
CACAGCAGCAGCACACCCACAATGGCAGCAGCACCCCCTAAAGTTAAGGG
CATTTGTTTCGACATGGACGGCACTCTGACGAATAGCGACAACCTTCATT
TTGAGACGTACCGTGATACGTTGCTCAAAATGGCGCCCGAATACAACAGT
GGGAAGCCTTTGGAGCGGGCTTTCTACGACGCAAAACTCTCGGGAAGCGC
TAACGAGATAATCGTGCCTACCCTCCTCCCACACTGGGAGCGGGCCCGCA
TGGAAGAACTATGGTTGGCTAAGGAAGCTTTATACAGGAAACGGTCTGTG
GATATCTCCCCTTTGCCAGGAGTCCTTCGTATCCTGGATTGGTGTGATGC
CCAAAAGGTTGACTATGTCTTGGTAACGAATGCGCCAAGAGTTGACTGTA
TCCACACCTTACACTCCCTCAAGCTGAATGAGCGCTTCGACAACAGCAAG
ATTGTGATTGGAGAGGAAGTAGCCAGGCCAAAGCCTTTTCCAGACGCGTA
CAACGAGGGTTTGCGACGCTTGGGTCTTGCTGCACATGAGTGTATTGCAT
TCGAAGATTCATTCAGTGGCTTAGCGTCAGCAGTAGCAGCAGGGATACCG
ACCGTGGCGGTTTTGACTTCTCGCGCGGAAGGGGAGATGACAGATAAAGG
CGCGTTCATGACGATAAAGGATTTTGAGGCCCCGAGCTTGTGGGAGATAT
TGGAGGCGGGGAGGTAG
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protein sequence of NO03G03700.1

>NO03G03700.1-protein ID=NO03G03700.1-protein|Name=NO03G03700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MAQRAVLKFRVFVVSLVLWSYSAVAFTTKVSLKSPLSCSARIFQLHQRRT
HSSSTPTMAAAPPKVKGICFDMDGTLTNSDNLHFETYRDTLLKMAPEYNS
GKPLERAFYDAKLSGSANEIIVPTLLPHWERARMEELWLAKEALYRKRSV
DISPLPGVLRILDWCDAQKVDYVLVTNAPRVDCIHTLHSLKLNERFDNSK
IVIGEEVARPKPFPDAYNEGLRRLGLAAHECIAFEDSFSGLASAVAAGIP
TVAVLTSRAEGEMTDKGAFMTIKDFEAPSLWEILEAGR*
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mRNA from alignment at chr3:1098723..1099687-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03700.1 ID=NO03G03700.1|Name=NO03G03700.1|organism=Nannochloropsis oceanica|type=mRNA|length=965bp|location=Sequence derived from alignment at chr3:1098723..1099687- (Nannochloropsis oceanica)
ATGGCGCAGCGCGCAGTCCTGAAATTTCGGGTCTTTGTCGTCTCTCTGGT
CCTTTGGTACGTGCTAGCACTTCCTTCCCCTCCCCTACCGTGCCGCCCCA
GCCCTCAGCCGTGCTTATACTTCGGGGGGAGAGGACTCCCTCCCCTTCCC
ACAGGTCCTACAGCGCGGTCGCGTTTACTACAAAAGTCTCACTAAAATCG
CCCCTGTCGTGCTCTGCAAGAATATTCCAGCTCCACCAGCGGCGCACCCA
CAGCAGCAGCACACCCACAATGGCAGCAGCACCCCCTAAAGTTAAGGGCA
TTTGTTTCGACATGGACGGCACTCTGACGAATAGCGACAACCTTCATTTT
GAGACGTACCGTGATACGTTGCTCAAAATGGCGCCCGAATACAACAGTGG
GAAGCCTTTGGAGCGGGCTTTCTACGACGCAAAACTCTCGGGAAGCGCTA
ACGAGATAATCGTGCCTACCCTCCTCCCACACTGGGAGCGGGCCCGCATG
GAAGAACTATGGTTGGCTAAGGAAGCTTTATACAGGAAACGGTCTGTGGA
TATCTCCCCTTTGCCAGGAGTCCTTCGTATCCTGGATTGGTGTGATGCCC
AAAAGGTTGACTATGTCTTGGTAACGAATGCGCCAAGAGTTGACTGTATC
CACACCTTACACTCCCTCAAGCTGAATGAGCGCTTCGACAACAGCAAGAT
TGTGATTGGAGAGGAAGTAGCCAGGCCAAAGCCTTTTCCAGACGCGTACA
ACGAGGGTTTGCGACGCTTGGGTCTTGCTGCACATGAGTGTATTGCATTC
GAAGATTCATTCAGTGGCTTAGCGTCAGCAGTAGCAGCAGGGATACCGAC
CGTGGCGGTTTTGACTTCTCGCGCGGAAGGGGAGATGACAGATAAAGGCG
CGTTCATGACGATAAAGGATTTTGAGGCCCCGAGCTTGTGGGAGATATTG
GAGGCGGGGAGGTAG
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Coding sequence (CDS) from alignment at chr3:1098723..1099687-

>NO03G03700.1 ID=NO03G03700.1|Name=NO03G03700.1|organism=Nannochloropsis oceanica|type=CDS|length=867bp|location=Sequence derived from alignment at chr3:1098723..1099687- (Nannochloropsis oceanica)
ATGGCGCAGCGCGCAGTCCTGAAATTTCGGGTCTTTGTCGTCTCTCTGGT
CCTTTGGTCCTACAGCGCGGTCGCGTTTACTACAAAAGTCTCACTAAAAT
CGCCCCTGTCGTGCTCTGCAAGAATATTCCAGCTCCACCAGCGGCGCACC
CACAGCAGCAGCACACCCACAATGGCAGCAGCACCCCCTAAAGTTAAGGG
CATTTGTTTCGACATGGACGGCACTCTGACGAATAGCGACAACCTTCATT
TTGAGACGTACCGTGATACGTTGCTCAAAATGGCGCCCGAATACAACAGT
GGGAAGCCTTTGGAGCGGGCTTTCTACGACGCAAAACTCTCGGGAAGCGC
TAACGAGATAATCGTGCCTACCCTCCTCCCACACTGGGAGCGGGCCCGCA
TGGAAGAACTATGGTTGGCTAAGGAAGCTTTATACAGGAAACGGTCTGTG
GATATCTCCCCTTTGCCAGGAGTCCTTCGTATCCTGGATTGGTGTGATGC
CCAAAAGGTTGACTATGTCTTGGTAACGAATGCGCCAAGAGTTGACTGTA
TCCACACCTTACACTCCCTCAAGCTGAATGAGCGCTTCGACAACAGCAAG
ATTGTGATTGGAGAGGAAGTAGCCAGGCCAAAGCCTTTTCCAGACGCGTA
CAACGAGGGTTTGCGACGCTTGGGTCTTGCTGCACATGAGTGTATTGCAT
TCGAAGATTCATTCAGTGGCTTAGCGTCAGCAGTAGCAGCAGGGATACCG
ACCGTGGCGGTTTTGACTTCTCGCGCGGAAGGGGAGATGACAGATAAAGG
CGCGTTCATGACGATAAAGGATTTTGAGGCCCCGAGCTTGTGGGAGATAT
TGGAGGCGGGGAGGTAG
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Synonyms
Publications