NO03G02750.2, NO03G02750.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02750.2
Unique NameNO03G02750.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1900
Alignment locationchr3:780026..782698 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:780026..782698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02750.2 vs.
Match: EWM29713.1 (pantoate--beta-alanine ligase [Nannochloropsis gaditana])

HSP 1 Score: 283.1 bits (723), Expect = 1.000e-72
Identity = 137/188 (72.87%), Postives = 166/188 (88.30%), Query Frame = 0 
Query:  121 MYPSSHRCYVVPDGFDHLAEGNARPGHFRGVATIVTKLFGMVQPTKAYFGQKDAMQCVLVRRLVEDLNLLPKIVVCPTIREDDGLAMSSRNAYLGEQERQAAPVVYRALQVAQKAFKNSQEPMEAAKLREIIRTIFAKEPLVESVEYVSVARKDTMEEIMEKVEPGEGAIISLALRLGKVRLIDNIIL 309
            MY  SHRCYVVP+GF+HLAEG +RPGHF+GVATIVTKLFG+VQPTKAYFGQKDAMQCVL+RRLVEDLNL P IVVC T+RE DGLAMSSRNAYL + ER AAPVVY++L+ A++AF NS+  + AA+LR+I+R + A+E L+ +VEYVSVARKDTMEE+ + V+P EGA+ISLA+RLGKVRLIDN+I+
Sbjct:    1 MYTPSHRCYVVPEGFEHLAEGKSRPGHFKGVATIVTKLFGIVQPTKAYFGQKDAMQCVLMRRLVEDLNLPPAIVVCDTVREKDGLAMSSRNAYLSQHERSAAPVVYKSLRAAEQAFCNSETSISAAELRKIVRDVLAREELIHTVEYVSVARKDTMEELEDIVQPNEGAVISLAVRLGKVRLIDNVII 188
The following BLAST results are available for this feature:
BLAST of NO03G02750.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29713.11.000e-7272.87pantoate--beta-alanine ligase [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02750NO03G02750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02750.2NO03G02750.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02750.2.cds1NO03G02750.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02750.2.cds2NO03G02750.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02750.2.cds3NO03G02750.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02750.2.cds4NO03G02750.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02750.2.cds5NO03G02750.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02750.2.cds6NO03G02750.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02750.2 ID=NO03G02750.2|Name=NO03G02750.2|organism=Nannochloropsis oceanica|type=mRNA|length=1900bp
TGCACCGCAACCCTTTGCTCCTGTGTGTGCCGTACGCGAGGGGGTGGGGG
ATACCGAGTCTGCGTGAACTTTGTGGTCGCATGCGCCGACAATCAAGAAG
CAGAGCAGTTTTGGAGAAGGGTACGCGAGGCGTTAGGGAGTCCAAGTCAG
CCACGCGAATGTCTGGGCATCAAGGCTACGTTTAAACACGTCACAACCCG
CCTATGTCATGCACGATATCTCCTGTTTGAAATGCAAGTCAGATCTGGCC
TGGGTTGCGATGAATGGTCAAGCCCGGGGGACATGGAAAGGAGACCCATC
CGCGAGTGAACATGTGAGCGAAGGACCGGGCATCCCAAGCTCTCTTCGCA
TTGCAAATTAGCCTGCCACATTCACTACCGATGGCCCTCCATCCATATTT
TAAAGGCAAGAAGACCTATCCTGGACGCTACGACTTAGCTGTCCCTATTT
CCGTCCAAGGGAAGCGCTCACGGTGGGAGGGGGGTCTAGCATCATCGCAA
GCGAGAGAGAGGTCGTCGTTGTCGTCGTGTGGGTGAGGAGGCTGAGAGCA
TAGACAAGAAGTTTTCCCCTTGGCTTCTCGACCCAACGGCGTCAGAGTCA
AGGATAAATTATGACCAATACCTCCTGGTGGCGACGATGGGCAGGGGCAG
CGTTCGTGGCCAAAAGGTCTTTCAGAAGCGGAGAAACGCCACGTATTTTA
CGCACGCCCGCGGAAATGATGGCACTGCGTAGGAGTATCGACAGCCAACG
TTCCGTGGGCTTCGTGCCTACAATGGGCGCCCTTCATCACGGCCATTTGC
AGCTGATGGAGGTAGGCAGACGGCTGGGCAGGCCTATTAATAGTATGTAT
GCTACATCAAGTTTGCCTTCCTTTGTCCCTTCACTTCTTTCCTTCATTTC
ATTTTCTCATTACCCTTCCCGCTCTTCCCACCACTAAGCGAGCACGGAAA
GAAAATGACTATCTAATCATCAGTGTGTTTGTCAATCCAACGCAATTCGG
GCCAAACGAAGACTTTGACATGTATCCACGGCAGCTTGAGAGGGACGTGG
AGATGGCCAAGGACACAGGTAAGAAAATATATATCCTAAGGTCTTCTCTT
TCTCGCCTGCTAGCTGACAAATGCCGCAACGTTCTGGTAATACGCTTCCA
CCCCCTCTTTTCCTCCTGTTCAGGCGTCGACTTCATTTTCGCTCCAATGG
TGGCGGACATGTACCCTTCGTCACATCGTTGCTACGTGGTCCCCGACGGC
TTTGATCACCTGGCGGAGGGTAATGCCCGACCGGGTCATTTTCGGGGCGT
GGCTACCATCGTGACGAAGCTGTTTGGCATGGTGCAGCCCACCAAGGCGT
ACTTTGGGCAGAAGGATGCCATGCAATGCGTGCTTGTGCGCCGATTGGTG
GAAGACCTAAACCTTCTCCCCAAGATCGTAGTCTGTCCAACCATCCGCGA
AGACGACGGCCTGGCCATGAGCAGTCGCAATGCCTACCTAGGCGAGCAGG
AGCGCCAGGCGGCCCCCGTGGTTTACCGGGCGCTACAAGTCGCTCAAAAA
GCATTCAAAAACTCGCAGGAACCTATGGAGGCTGCAAAGCTCAGGGAGAT
TATAAGAACCATCTTTGCCAAGGAGCCGCTGGTGGAAAGCGTTGAATATG
TGTCGGTGGCGCGGAAGGACACGATGGAGGAGATAATGGAGAAGGTGGAG
CCCGGCGAGGGGGCCATCATCTCACTAGCGTTGCGACTAGGCAAGGTGCG
GTTGATAGATAACATTATCCTGTGAGAGGAGGGAGAGAGGAGGTTGAGAA
ATAGGAAGCATTCTTTACACACATAGACATAGGTCAACAAGAAGAAATAA
AGAAAGAAGGCACTCCAACCAAGCATTACGGTAATACATGCATGATTCAG
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protein sequence of NO03G02750.2

>NO03G02750.2-protein ID=NO03G02750.2-protein|Name=NO03G02750.2|organism=Nannochloropsis oceanica|type=polypeptide|length=309bp
MLHQVCLPLSLHFFPSFHFLITLPALPTTKRARKENDYLIISVFVNPTQF
GPNEDFDMYPRQLERDVEMAKDTGKKIYILRSSLSRLLADKCRNVLVIRF
HPLFSSCSGVDFIFAPMVADMYPSSHRCYVVPDGFDHLAEGNARPGHFRG
VATIVTKLFGMVQPTKAYFGQKDAMQCVLVRRLVEDLNLLPKIVVCPTIR
EDDGLAMSSRNAYLGEQERQAAPVVYRALQVAQKAFKNSQEPMEAAKLRE
IIRTIFAKEPLVESVEYVSVARKDTMEEIMEKVEPGEGAIISLALRLGKV
RLIDNIIL*
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mRNA from alignment at chr3:780026..782698-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02750.2 ID=NO03G02750.2|Name=NO03G02750.2|organism=Nannochloropsis oceanica|type=mRNA|length=2673bp|location=Sequence derived from alignment at chr3:780026..782698- (Nannochloropsis oceanica)
TGCACCGCAACCCTTTGCTCCTGTGTGTGCCGTACGCGAGGGGGTGGGGG
ATACCGAGTCTGCGTGAACTTTGTGGTCGCATGCGCCGACAATCAAGAAG
CAGAGCAGTTTTGGAGAAGGGTACGCGAGGCGTTAGGGAGTCCAAGTCAG
CCACGCGAATGTCTGGGCATCAAGGCTACGTTTAAACACGTCACAACCCG
CCTATGTCATGCACGATATCTCCTGTTTGAAATGCAAGTCAGATCTGGCC
TGGGTTGCGATGAATGGTCAAGCCCGGGGGACATGGAAAGGAGACCCATC
CGCGAGTGAACATGTGAGCGAAGGACCGGGCATCCCAAGCTCTCTTCGCA
TTGCAAATTAGCCTGCCACATTCACTACCGATGGCCCTCCATCCATATTT
TAAAGGCAAGAAGACCTATCCTGGACGCTACGACTTAGCTGTCCCTATTT
CCGTCCAAGGGAAGCGCTCACGGTGGGAGGGGGGTCTAGCATCATCGCAA
GCGAGAGAGAGGTCGTCGTTGTCGTCGTGTGGGTGAGGAGGCTGAGAGCA
TAGACAAGAAGTTTTCCCCTTGGCTTCTCGACCCAACGGCGTCAGAGTCA
AGGATAAATTATGACCAATACCTCCTGGTGGCGACGATGGGCAGGGGCAG
CGTTCGTGGCCAAAAGGTCTTTCAGAAGCGGAGAAACGCCACGGTAAGCA
CCTCTCTCTCAGGCCATTTGTGTGTATCTTTCATTCATTGTTTCTCAGCT
TTTACAGCGCATGGGTTGTTGCATTTTTGCGACCCCTGCCTCTTGCTTTC
ATCACTCACATTCCTCCGGCCCCCTTTGACTGTGGTCATGGCTGTCGTTC
CCACACGCACAGTATTTTACGCACGCCCGCGGAAATGATGGCACTGCGTA
GGAGTATCGACAGCCAACGTTCCGTGGGCTTCGTGCCTACAATGGGCGCC
CTTCATCACGGCCATTTGCAGCTGATGGAGGTAGGCAGACGGCTGGGCAG
GCCTATTAATAGTATGTATGCTACATCAAGTTTGCCTTCCTTTGTCCCTT
CACTTCTTTCCTTCATTTCATTTTCTCATTACCCTTCCCGCTCTTCCCAC
CACTAAGCGAGCACGGAAAGAAAATGACTATCTAATCATCAGTGTGTTTG
TCAATCCAACGGTAAGAGTGAAGGAGCGCGTGAAAGGGGCGGACAGGAAT
ATTTTTGAAAGAAAAGAAGTACGATAAAGATTTACACTCTATCTGTTTCC
CTTGATAAATAAATTCCAGCAATTCGGGCCAAACGAAGACTTTGACATGT
ATCCACGGCAGCTTGAGAGGGACGTGGAGATGGCCAAGGACACAGGTAAG
AAAATATATATCCTAAGGTCTTCTCTTTCTCGCCTGCTAGCTGACAAATG
CCGCAACGTTCTGGTAATACGCTTCCACCCCCTCTTTTCCTCCTGTTCAG
GCGTCGACTTCATTTTCGCTCCAATGGTGGCGGACATGTACCCTTCGTCA
CATCGTTGCTACGTGGTCCCCGACGGCTTTGATCACCTGGCGGAGGGTAA
TGCCCGACCGGGTCATTTTCGGGGCGTGGCTACCATCGTGACGAAGCTGT
TTGGCATGGTGCAGCCCACCAAGGTAGATAGGTTACTTTGTTATGGTGGG
CTCGGAAAGAGCCATCCACTCAGCGCCACCTTCTCAACCGATGAGTGCTG
TCCAAGATCCATTCTATCCGGCGTGTGCCTCGGGGCTCTCTTGTGTCTCA
TACTTGCATATTTTCCATCCAACCTCCTGCCCCCTCCAGGCGTACTTTGG
GCAGAAGGATGCCATGCAATGCGTGCTTGTGCGCCGATTGGTGGAAGACC
TAAACCTTCTCCCCAAGATCGTAGTCTGTCCAACCAGTAAGTCAGGCGGG
TCACCTAAAGATGACGACCAAGATGAAGCACCTCCTGACAATCATACCTC
ACTTCGACCCTTCACCCCTTCCTTGCTCCCGTCAGTCCGCGAAGACGACG
GCCTGGCCATGAGCAGTCGCAATGCCTACCTAGGCGAGCAGGTATTTCGT
GCTATACTTATCTTTCAAAGTAATTCCTTACCACTTCGCACGCTATCACT
CTCTTATCTCTTCTCATCACCCACACTTCCGTAGGAGCGCCAGGCGGCCC
CCGTGGTTTACCGGGCGCTACAAGTCGCTCAAAAAGCATTCAAAAACTCG
CAGGAACCTATGGAGGCTGCAAAGCTCAGGGAGATTATAAGAACCATCTT
TGCCAAGGTGAGATTTCACGGGAAGAAAGTATCGTTATCGCGAGCTGGAA
ATCGGGAGCTCTCTTTTTTTACTCCCTCACTTGTGGGAGTAGAATGGGCA
TGTATCCTTCCTCATTCCCTCCGTTTCTCCCCCGTTTCACACCAGGAGCC
GCTGGTGGAAAGCGTTGAATATGTGTCGGTGGCGCGGAAGGACACGATGG
AGGAGATAATGGAGAAGGTGGAGCCCGGCGAGGGGGCCATCATCTCACTA
GCGTTGCGACTAGGCAAGGTGCGGTTGATAGATAACATTATCCTGTGAGA
GGAGGGAGAGAGGAGGTTGAGAAATAGGAAGCATTCTTTACACACATAGA
CATAGGTCAACAAGAAGAAATAAAGAAAGAAGGCACTCCAACCAAGCATT
ACGGTAATACATGCATGATTCAG
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Coding sequence (CDS) from alignment at chr3:780026..782698-

>NO03G02750.2 ID=NO03G02750.2|Name=NO03G02750.2|organism=Nannochloropsis oceanica|type=CDS|length=927bp|location=Sequence derived from alignment at chr3:780026..782698- (Nannochloropsis oceanica)
ATGCTACATCAAGTTTGCCTTCCTTTGTCCCTTCACTTCTTTCCTTCATT
TCATTTTCTCATTACCCTTCCCGCTCTTCCCACCACTAAGCGAGCACGGA
AAGAAAATGACTATCTAATCATCAGTGTGTTTGTCAATCCAACGCAATTC
GGGCCAAACGAAGACTTTGACATGTATCCACGGCAGCTTGAGAGGGACGT
GGAGATGGCCAAGGACACAGGTAAGAAAATATATATCCTAAGGTCTTCTC
TTTCTCGCCTGCTAGCTGACAAATGCCGCAACGTTCTGGTAATACGCTTC
CACCCCCTCTTTTCCTCCTGTTCAGGCGTCGACTTCATTTTCGCTCCAAT
GGTGGCGGACATGTACCCTTCGTCACATCGTTGCTACGTGGTCCCCGACG
GCTTTGATCACCTGGCGGAGGGTAATGCCCGACCGGGTCATTTTCGGGGC
GTGGCTACCATCGTGACGAAGCTGTTTGGCATGGTGCAGCCCACCAAGGC
GTACTTTGGGCAGAAGGATGCCATGCAATGCGTGCTTGTGCGCCGATTGG
TGGAAGACCTAAACCTTCTCCCCAAGATCGTAGTCTGTCCAACCATCCGC
GAAGACGACGGCCTGGCCATGAGCAGTCGCAATGCCTACCTAGGCGAGCA
GGAGCGCCAGGCGGCCCCCGTGGTTTACCGGGCGCTACAAGTCGCTCAAA
AAGCATTCAAAAACTCGCAGGAACCTATGGAGGCTGCAAAGCTCAGGGAG
ATTATAAGAACCATCTTTGCCAAGGAGCCGCTGGTGGAAAGCGTTGAATA
TGTGTCGGTGGCGCGGAAGGACACGATGGAGGAGATAATGGAGAAGGTGG
AGCCCGGCGAGGGGGCCATCATCTCACTAGCGTTGCGACTAGGCAAGGTG
CGGTTGATAGATAACATTATCCTGTGA
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Synonyms
Publications