NO02G05710.1, NO02G05710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05710.1
Unique NameNO02G05710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1215
Alignment locationchr2:1517780..1520419 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1517780..1520419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G05710.1 vs.
Match: EWM30103.1 (udp-galactose transporter [Nannochloropsis gaditana])

HSP 1 Score: 492.3 bits (1266), Expect = 1.500e-135
Identity = 278/399 (69.67%), Postives = 316/399 (79.20%), Query Frame = 0 
Query:    1 MRREPHQ--LSNSFDTIHKPTLHEREMEKGRGGN-DGNSSTLETERMMLLRQSTPAQPDTPKKLFSFLTHVTLTIEALPRLTKFCLLVLGLFFFFGLHNLLQEKIMHFPGFTFGWTLGFLEVLGVTFFSYWERKWAGEGGVRRASLRAYLATTLCLLGSSSLSNKALDYINYPTKVVFRSCKLIPTMVIAGVMNKKTFTGIEYMAALAVCLGLIFFAFADVQVAPAFSPWGITLVSLSVVCDAILPNLQVRLFEAGSSRLEVTFYSNIMTLVLMSFSTLLSGDLLGALAYARSNQTAAVYLVMYTLLAYLAISLHMTMVQSFGSVAAVLVGNSRKTMTICLSFLLFPKPFSPLYVWGGMLVLGGLTGSAYMKAREKGGGKGGGGGGGGGEKVVVRPVAV 397
            MRR+ H    S     +H    HEREMEKGR    D  S + E E+M LL +     PDTPKK  +    +  T++ LPR+ KFCLLV+GLFFFFG+HNLLQE+IMHFPGFTFGW+LGFLEVLGVT FSYWER+W  E GVRR S R+Y+ TTLCL+GSSSL+NKALDYINYPTKVVFRSCKLIPTMVI+ VMN+K F G+EY AA+AVC+GLI FAFADV+VAP+FSPWGITLVSLSVVCDA+LPNLQ RLF  GSSRLEVTFYSNI+TL LMS STLLSGDLLGALAYA+++  AAV L++YTLLAY+AISLHM +V+SFGSVAAVLVGNSRKTMTICLSFLLFPKPFS LYV GGMLVL GLT S Y+K  +K  G         GE  VV P AV
Sbjct:    1 MRRDLHTPIASKKVQQMHS---HEREMEKGRILRIDEASGSSEAEKMNLLGELPIDDPDTPKKTSAPTMSLLSTLDTLPRIWKFCLLVVGLFFFFGVHNLLQEQIMHFPGFTFGWSLGFLEVLGVTVFSYWERRWYKEAGVRRGSWRSYVGTTLCLMGSSSLANKALDYINYPTKVVFRSCKLIPTMVISSVMNQKPFKGVEYAAAVAVCVGLILFAFADVRVAPSFSPWGITLVSLSVVCDAVLPNLQERLFAEGSSRLEVTFYSNILTLGLMSVSTLLSGDLLGALAYAQADHKAAVLLLVYTLLAYVAISLHMALVKSFGSVAAVLVGNSRKTMTICLSFLLFPKPFSNLYVVGGMLVLAGLTVSVYVKNMDKKKGADDAVLNCKGE--VVGPTAV 394
The following BLAST results are available for this feature:
BLAST of NO02G05710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30103.11.500e-13569.67udp-galactose transporter [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05710NO02G05710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05710.1NO02G05710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05710.1.cds1NO02G05710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05710.1.cds2NO02G05710.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05710.1.cds3NO02G05710.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05710.1.cds4NO02G05710.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05710.1.cds5NO02G05710.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05710.1.cds6NO02G05710.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05710.1.cds7NO02G05710.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05710.1.cds8NO02G05710.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05710.1 ID=NO02G05710.1|Name=NO02G05710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1215bp
ATGCGTCGCGAGCCCCACCAACTATCAAATTCCTTCGATACCATTCACAA
GCCTACCCTCCACGAACGGGAAATGGAGAAAGGCAGGGGAGGCAACGATG
GCAACAGCAGCACCTTGGAGACCGAGCGGATGATGCTGCTAAGGCAGTCC
ACTCCTGCCCAACCAGATACTCCCAAAAAGCTCTTCTCCTTCCTTACCCA
TGTCACTCTCACCATTGAGGCCCTCCCTCGCCTCACTAAATTCTGCCTCC
TCGTCCTTGGCCTCTTTTTCTTCTTTGGCTTACACAACCTACTTCAAGAA
AAAATCATGCATTTCCCCGGCTTCACATTTGGATGGACCCTCGGCTTCCT
GGAGGTGCTGGGCGTGACTTTCTTCTCGTACTGGGAACGGAAATGGGCTG
GGGAGGGAGGGGTGAGGAGAGCTAGCCTCCGAGCCTATCTGGCGACAACC
CTGTGTCTGCTTGGGAGTTCGTCCTTGTCCAATAAGGCCTTGGACTACAT
CAACTACCCGACGAAGGTGGTCTTTCGTTCCTGCAAGCTCATCCCTACCA
TGGTCATCGCCGGCGTGATGAATAAGAAGACATTCACGGGTATAGAGTAC
ATGGCCGCCCTCGCTGTCTGCCTGGGTCTTATTTTCTTCGCCTTTGCCGA
CGTCCAGGTGGCGCCTGCTTTCTCACCGTGGGGCATCACGCTTGTCTCGC
TCTCGGTGGTTTGTGACGCCATCCTCCCCAACCTCCAAGTCCGACTCTTC
GAGGCTGGCTCCTCCCGCCTGGAAGTGACCTTCTACTCCAATATCATGAC
CCTAGTTCTTATGTCCTTCTCCACCCTCCTCTCCGGAGACCTCCTGGGGG
CCCTCGCCTATGCCCGAAGCAACCAGACAGCGGCTGTATACTTGGTCATG
TACACACTGTTAGCGTACCTTGCCATCTCGCTGCATATGACGATGGTCCA
GAGCTTCGGGTCAGTCGCTGCTGTACTTGTCGGGAACAGCCGGAAAACGA
TGACGATTTGCTTGTCCTTTCTGTTGTTTCCCAAGCCCTTCTCGCCTTTG
TATGTGTGGGGGGGCATGCTGGTGTTGGGGGGCTTGACGGGAAGTGCCTA
CATGAAGGCAAGGGAGAAGGGGGGAGGGAAAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGAGAAGGTGGTGGTGCGACCTGTGGCGGTGGAGGCTGAAATG
CGGAGTCGGCAATAG
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protein sequence of NO02G05710.1

>NO02G05710.1-protein ID=NO02G05710.1-protein|Name=NO02G05710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MRREPHQLSNSFDTIHKPTLHEREMEKGRGGNDGNSSTLETERMMLLRQS
TPAQPDTPKKLFSFLTHVTLTIEALPRLTKFCLLVLGLFFFFGLHNLLQE
KIMHFPGFTFGWTLGFLEVLGVTFFSYWERKWAGEGGVRRASLRAYLATT
LCLLGSSSLSNKALDYINYPTKVVFRSCKLIPTMVIAGVMNKKTFTGIEY
MAALAVCLGLIFFAFADVQVAPAFSPWGITLVSLSVVCDAILPNLQVRLF
EAGSSRLEVTFYSNIMTLVLMSFSTLLSGDLLGALAYARSNQTAAVYLVM
YTLLAYLAISLHMTMVQSFGSVAAVLVGNSRKTMTICLSFLLFPKPFSPL
YVWGGMLVLGGLTGSAYMKAREKGGGKGGGGGGGGGEKVVVRPVAVEAEM
RSRQ*
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mRNA from alignment at chr2:1517780..1520419+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05710.1 ID=NO02G05710.1|Name=NO02G05710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2640bp|location=Sequence derived from alignment at chr2:1517780..1520419+ (Nannochloropsis oceanica)
ATGCGTCGCGAGCCCCACCAACTATCAAATTCCTTCGATACCATTCACAA
GCCTACCCTCCACGAACGGGAAATGGAGAAAGGCAGGGGAGGCAACGATG
GCAACAGCAGCACCTTGGAGACCGAGCGGATGATGCTGCTAAGGGTACGT
TGTCGCGAGGGGAAGGTATGGGGGGGGAGCAAAACCGAGTGTTCTAAGAT
TTGTTGTCTGCTACGTGTCCTACACCCATCCTAACCCCTCCCGTACTCGC
TTTTGTCCGTTTCCTTTCTTATTTCACCCTTTTCTCACGCATATCTCCCT
CCGGTCCGCTGACGTCACACATACACACACCCGCGCAACTTCCCCTCCTT
TCCTCCATATTTCCCTCCCTCCCTTCTTTCCCCTTCCAAAACCACAGCAG
TCCACTCCTGCCCAACCAGATACTCCCAAAAAGCTCTTCTCCTTCCTTAC
CCATGTCACTCTCACCATTGAGGCCCTCCCTCGCCTCACTAAATTCTGCC
TCCTCGTCCTTGGCCTCTTTTTCTTCTTTGGCTTACACAACCTACTTCAA
GGTGAGCACATCAAGGAATAAAGAGAAAGAGGGGAAGAAGGGAGAGACGA
GGGGGGGAAAGAAAGGGAAAAATAGTGTTGCCGTGCCGATCTAATTCCCT
TCCCTCCCTTTCTCCTTTCATGCAGAAAAAATCATGCATTTCCCCGGCTT
CACATTTGGATGGACCCTCGGCTTCCTGGAGGTGCTGGGCGTGACTTTCT
TCTCGTACTGGGAACGGAAATGGGCTGGGGAGGGAGGGGTGAGGAGAGCT
AGCCTCCGAGCCTATCTGGCGACAACCCTGTGTCTGCTTGGGAGTTCGTC
CTTGTCCAATAAGGTAAGGAGGGAGGGAGGGAGGAGGGGAGGGAGGGAGG
GAGGGTGGTTGTCCACAAGTCGAAACCAAAATATCCCTCACATCTGTGTG
CCCTCCTTCCTCCCTCCCTCCCTCCCTCCCTTCCCCCCTCCAGGCCTTGG
ACTACATCAACTACCCGACGAAGGTGGTCTTTCGTTCCTGCAAGCTCATC
CCTACCATGGTCATCGCCGGGTACGGACGTCCCTCCCTCCCTCCCTCCTT
CCCTCCCTTTCTCCAGCCCTTATTTCTCTTTCCCTCTCTTTGACTCCTGT
GCATGCTTCAAACGGAGGATAGCATGGTCATGAAATCGCGCTCTCTCTCC
ACCCTCCCCTTCCTCCCTCCCGCCCTTTTTCCTACCCGCATCATTTGTTC
CGCTTCATCTCCTCTTTCTGATTTCCCCTTCCCCCCCGTACCTCCCTCGT
TTCCTCACCCTCAGCGTGATGAATAAGAAGACATTCACGGGTATAGAGTA
CATGGCCGCCCTCGCTGTCTGCCTGGGTCTTATTTTCTTCGCCTTTGCCG
ACGTCCAGGTGGCGCCTGCTTTCTCACCGTGGTGAGGAGGGAGGGAGGCC
GGGAGGGGGGAAAGAGCCGGTCATGCTTCTCCTTGTTGTCTCATCATCTA
TCCTCTCCCTCCCTCCCTCCCAGGGGCATCACGCTTGTCTCGCTCTCGGT
GGTTTGTGACGCCATCCTCCCCAACCTCCAAGTCCGACTCTTCGAGGCTG
GCTCCTCCCGCCTGGAAGGTAAGGCAGGCAGGGACGGAGGTAGGGAGGGA
AGGAGGGGAGGAGGGAAAGAGGGCAATATCCTGCACTGATGTCGACACCG
AGGATCGCGTCGTCCCTCCCTCCCTCCCTCGTCCCCTCCCTGCAATCCTT
CGGCCCTTGTGATCATGTCCTTCTCCACCTTCCCTATTCGCGCCGCCTGA
CGAACTCCTTTCTCCCTCCCTCCCTCCCTCCCCCCCCCGCAGTGACCTTC
TACTCCAATATCATGACCCTAGTTCTTATGTCCTTCTCCACCCTCCTCTC
CGGAGACCTCCTGGGGGCCCTCGCCTATGCCCGAAGCAACCAGACAGCGG
CTGTATACTTGGTCATGTACACACTGTTAGCGTACCTTGCCATCTCGCTG
CATATGGTACGAGGGAGGGGGGAAGGAAGGGATGGAGGGAGTGAGGGGAA
ATCATTGTGTATTTTTGGGTTGGAGGTGTTTGGGTTGGAGGTGTTTGGTC
CCTTTCAGTCTCAGAGCTTGTCAATTATTTTTATCATGTTTGGTGTTTGT
CGTACCTCCCGCATGCCTTTCCTCCTCACCTCTTCACCCCCCTCTCCTTG
TCTTCCACTCTACCTCCCGCTCTCGGTTTTCACACACACAATCCCTCGCT
CCCTCTGGGACAAACACTCTTGAACAAATCAACAAACAACACATAAATTA
ATCACTTGCTTCTTCACGGACACGCACTCACGCATGCATCAACAAACAAC
ACATGAATCAACAGACGATGGTCCAGAGCTTCGGGTCAGTCGCTGCTGTA
CTTGTCGGGAACAGCCGGAAAACGATGACGATTTGCTTGTCCTTTCTGTT
GTTTCCCAAGCCCTTCTCGCCTTTGTATGTGTGGGGGGGCATGCTGGTGT
TGGGGGGCTTGACGGGAAGTGCCTACATGAAGGCAAGGGAGAAGGGGGGA
GGGAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGAAGGTGGTGGTGCG
ACCTGTGGCGGTGGAGGCTGAAATGCGGAGTCGGCAATAG
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Coding sequence (CDS) from alignment at chr2:1517780..1520419+

>NO02G05710.1 ID=NO02G05710.1|Name=NO02G05710.1|organism=Nannochloropsis oceanica|type=CDS|length=1215bp|location=Sequence derived from alignment at chr2:1517780..1520419+ (Nannochloropsis oceanica)
ATGCGTCGCGAGCCCCACCAACTATCAAATTCCTTCGATACCATTCACAA
GCCTACCCTCCACGAACGGGAAATGGAGAAAGGCAGGGGAGGCAACGATG
GCAACAGCAGCACCTTGGAGACCGAGCGGATGATGCTGCTAAGGCAGTCC
ACTCCTGCCCAACCAGATACTCCCAAAAAGCTCTTCTCCTTCCTTACCCA
TGTCACTCTCACCATTGAGGCCCTCCCTCGCCTCACTAAATTCTGCCTCC
TCGTCCTTGGCCTCTTTTTCTTCTTTGGCTTACACAACCTACTTCAAGAA
AAAATCATGCATTTCCCCGGCTTCACATTTGGATGGACCCTCGGCTTCCT
GGAGGTGCTGGGCGTGACTTTCTTCTCGTACTGGGAACGGAAATGGGCTG
GGGAGGGAGGGGTGAGGAGAGCTAGCCTCCGAGCCTATCTGGCGACAACC
CTGTGTCTGCTTGGGAGTTCGTCCTTGTCCAATAAGGCCTTGGACTACAT
CAACTACCCGACGAAGGTGGTCTTTCGTTCCTGCAAGCTCATCCCTACCA
TGGTCATCGCCGGCGTGATGAATAAGAAGACATTCACGGGTATAGAGTAC
ATGGCCGCCCTCGCTGTCTGCCTGGGTCTTATTTTCTTCGCCTTTGCCGA
CGTCCAGGTGGCGCCTGCTTTCTCACCGTGGGGCATCACGCTTGTCTCGC
TCTCGGTGGTTTGTGACGCCATCCTCCCCAACCTCCAAGTCCGACTCTTC
GAGGCTGGCTCCTCCCGCCTGGAAGTGACCTTCTACTCCAATATCATGAC
CCTAGTTCTTATGTCCTTCTCCACCCTCCTCTCCGGAGACCTCCTGGGGG
CCCTCGCCTATGCCCGAAGCAACCAGACAGCGGCTGTATACTTGGTCATG
TACACACTGTTAGCGTACCTTGCCATCTCGCTGCATATGACGATGGTCCA
GAGCTTCGGGTCAGTCGCTGCTGTACTTGTCGGGAACAGCCGGAAAACGA
TGACGATTTGCTTGTCCTTTCTGTTGTTTCCCAAGCCCTTCTCGCCTTTG
TATGTGTGGGGGGGCATGCTGGTGTTGGGGGGCTTGACGGGAAGTGCCTA
CATGAAGGCAAGGGAGAAGGGGGGAGGGAAAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGAGAAGGTGGTGGTGCGACCTGTGGCGGTGGAGGCTGAAATG
CGGAGTCGGCAATAG
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Synonyms
Publications