NO02G03770.1, NO02G03770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03770.1
Unique NameNO02G03770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1635
Alignment locationchr2:1018581..1020215 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1018581..1020215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03770.1 vs.
Match: EWM30302.1 (tld family protein [Nannochloropsis gaditana])

HSP 1 Score: 741.1 bits (1912), Expect = 2.400e-210
Identity = 377/539 (69.94%), Postives = 426/539 (79.04%), Query Frame = 0 
Query:    1 MPTLSPALVSPRSSVAGRQTTDAGSPSLPTPSTVSPDKTALRWLETSATRPKLYHAPERLGAGHYHHAHHEILTPDHAQRQYTLIMQDLSKKDPEWLDDLPLFGAPAASFHDHPLTREQEAASRRVLNVLGNTLEIDYCPLLLDLVPLLMVIMETCESSSVPAGSAAALRAEAVVYAVVRNMHLHRPFYFGTGHHQFLATLAAFRDYMRRYFPETAACMAAVGADTEDWLGVIFYRCLVPLVAHRDLLRLLELFLEDGVCFFFRFTLCLFKEMKWRLKSMELERAALWWDQLADITFSIDFDIDQGLGTVLAQYGTMVKRSNLDRLLALRMSDPIERELIVKQDIQPLRMHGLGLVADVNGSTSILHNKRTYLKLLASFLPLHQRQRKLSMLFSSDRHGRSLDSLYRMCGNKHPCILIIEEYKHGHVIGAYCPDPINPGNAVSGTGVAFLFRLTRPAVRYSWARDATQ-TVESDMFQLATKKFFAVGMSNDTDHPGLKVDADLETGSSHYSRTFANLPLCGRGQEKFGIRHVEVHTIVT 539
            M   SP+  SPR+S A RQ  D  +PS P    V+ +KT  RWLETSA RPKL+HAPER    HY+HAH+EIL+P+ A RQY L+  D +KKDPEW DDLPLFGA A SFHDHPLTREQEAASRRVL VLG T EID+CPLLLDLVPLLMV +                  EAVVYAVV NMHLHRPFYFG GH  FLA +AAFRDYM RYFP TAA MAAVGADTEDWLG+IFYRCL+PLV HR LL+LLEL+LEDGVCFFFRF L LFKE+KWRLK+M LE  A+WW Q+AD TFSIDFD+ QGL TVL  YGT VKRSNLDRLLA+RMSDP+ERELIVKQDI+PLR+HG    AD  G  SILHNKRTYLKL+ASFLP HQR R L MLFSS+RHGRSLD+LYR C N+ PCI++IEE +H HVIGA+CPDPI+P  AVSGTG AFLFRLTRPAVRY+W  D+T+ + E D+FQLAT  FFA+GMSND+DHPGL +DADL+TGSS  S+TFANLPLCG G EKF IR VEV  ++T
Sbjct:    1 MSDFSPSS-SPRNSTAERQA-DHQTPSPPPDFVVATEKTIKRWLETSALRPKLFHAPERQSDRHYYHAHNEILSPEKAHRQYMLVKDDFTKKDPEWQDDLPLFGAAAPSFHDHPLTREQEAASRRVLCVLGYTCEIDFCPLLLDLVPLLMVFLP-----------------EAVVYAVVHNMHLHRPFYFGIGHRYFLAVMAAFRDYMHRYFPATAAHMAAVGADTEDWLGLIFYRCLIPLVGHRHLLQLLELYLEDGVCFFFRFMLALFKEIKWRLKAMLLESGAMWWGQVADFTFSIDFDVKQGLTTVLTHYGTHVKRSNLDRLLAVRMSDPMERELIVKQDIEPLRLHGTTKGAD--GHVSILHNKRTYLKLIASFLPHHQRHRPLKMLFSSERHGRSLDTLYRACRNQQPCIILIEELRHEHVIGAFCPDPIHPEKAVSGTGAAFLFRLTRPAVRYAWVGDSTRASEERDVFQLATPHFFALGMSNDSDHPGLLIDADLDTGSSQQSKTFANLPLCGSGSEKFSIRRVEVLVLMT 518
The following BLAST results are available for this feature:
BLAST of NO02G03770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30302.12.400e-21069.94tld family protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03770NO02G03770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03770.1NO02G03770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03770.1.cds1NO02G03770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03770.1 ID=NO02G03770.1|Name=NO02G03770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1635bp
ATGCCAACCTTGAGCCCAGCGCTGGTATCCCCACGGAGCTCTGTCGCCGG
CAGGCAAACCACAGACGCAGGCTCCCCTTCTTTACCCACCCCTTCCACTG
TGTCGCCCGACAAGACGGCGTTGCGGTGGCTGGAGACCAGTGCCACACGC
CCCAAGCTCTACCACGCACCGGAGCGACTGGGTGCGGGCCATTATCATCA
TGCACACCACGAGATTCTAACGCCCGACCACGCTCAGCGGCAATACACGC
TCATTATGCAGGACTTGAGTAAGAAGGATCCAGAATGGCTGGATGACCTG
CCGCTTTTTGGTGCGCCCGCTGCCTCGTTTCACGACCATCCCTTGACGCG
GGAGCAGGAAGCTGCAAGCCGGCGGGTCTTGAATGTGTTGGGTAACACGT
TGGAAATTGACTACTGTCCACTCCTTTTAGACTTGGTTCCTCTCTTAATG
GTGATCATGGAGACTTGCGAGTCCTCTTCAGTGCCGGCCGGCTCTGCCGC
GGCCTTGCGCGCTGAGGCAGTGGTGTACGCAGTGGTGCGCAACATGCATC
TGCATCGTCCTTTTTATTTTGGTACGGGCCATCATCAATTTCTTGCGACA
CTGGCTGCGTTTCGCGACTACATGCGCAGGTACTTTCCTGAAACAGCAGC
GTGCATGGCGGCAGTGGGGGCTGATACGGAGGACTGGCTCGGCGTTATCT
TTTATAGATGCCTAGTGCCTTTGGTTGCTCATCGGGATTTGCTACGCCTT
CTCGAACTTTTTTTGGAGGACGGTGTGTGTTTCTTTTTCAGGTTTACCTT
ATGTTTGTTCAAAGAGATGAAGTGGAGGCTCAAAAGCATGGAGCTGGAGA
GAGCGGCTTTATGGTGGGATCAGCTTGCTGATATTACTTTTAGCATTGAC
TTTGACATCGACCAAGGACTTGGTACAGTATTGGCTCAATATGGGACGAT
GGTCAAGCGGAGCAACCTTGATCGTCTGCTTGCCCTCCGGATGAGTGACC
CCATCGAACGAGAGCTGATCGTGAAACAAGACATCCAACCCTTACGAATG
CATGGCCTTGGTCTAGTAGCGGATGTGAATGGCAGCACCAGCATACTGCA
CAACAAGCGCACCTATCTCAAGCTCCTAGCCAGTTTTCTTCCCCTCCACC
AACGCCAACGCAAGCTGAGCATGCTCTTCTCCAGTGACCGGCACGGGCGT
AGCCTCGACTCATTGTATCGCATGTGTGGAAATAAGCACCCATGCATCCT
CATTATTGAAGAATACAAGCACGGACATGTCATTGGTGCTTACTGTCCTG
ATCCCATCAATCCTGGCAACGCGGTAAGCGGGACAGGCGTTGCCTTTCTT
TTTCGGTTGACAAGACCAGCGGTGCGGTACAGCTGGGCAAGAGATGCCAC
GCAGACGGTGGAGTCGGACATGTTCCAATTGGCAACGAAAAAATTCTTTG
CAGTAGGCATGAGCAATGATACGGACCATCCTGGGTTGAAAGTGGATGCA
GATTTGGAGACGGGAAGTAGTCACTATTCCCGGACATTCGCGAATTTGCC
TTTGTGTGGCCGGGGACAGGAGAAATTTGGAATTCGACATGTGGAGGTCC
ACACCATTGTGACGCAGCCTAATGAGACAGATTAA
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protein sequence of NO02G03770.1

>NO02G03770.1-protein ID=NO02G03770.1-protein|Name=NO02G03770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=545bp
MPTLSPALVSPRSSVAGRQTTDAGSPSLPTPSTVSPDKTALRWLETSATR
PKLYHAPERLGAGHYHHAHHEILTPDHAQRQYTLIMQDLSKKDPEWLDDL
PLFGAPAASFHDHPLTREQEAASRRVLNVLGNTLEIDYCPLLLDLVPLLM
VIMETCESSSVPAGSAAALRAEAVVYAVVRNMHLHRPFYFGTGHHQFLAT
LAAFRDYMRRYFPETAACMAAVGADTEDWLGVIFYRCLVPLVAHRDLLRL
LELFLEDGVCFFFRFTLCLFKEMKWRLKSMELERAALWWDQLADITFSID
FDIDQGLGTVLAQYGTMVKRSNLDRLLALRMSDPIERELIVKQDIQPLRM
HGLGLVADVNGSTSILHNKRTYLKLLASFLPLHQRQRKLSMLFSSDRHGR
SLDSLYRMCGNKHPCILIIEEYKHGHVIGAYCPDPINPGNAVSGTGVAFL
FRLTRPAVRYSWARDATQTVESDMFQLATKKFFAVGMSNDTDHPGLKVDA
DLETGSSHYSRTFANLPLCGRGQEKFGIRHVEVHTIVTQPNETD*
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mRNA from alignment at chr2:1018581..1020215+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03770.1 ID=NO02G03770.1|Name=NO02G03770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1635bp|location=Sequence derived from alignment at chr2:1018581..1020215+ (Nannochloropsis oceanica)
ATGCCAACCTTGAGCCCAGCGCTGGTATCCCCACGGAGCTCTGTCGCCGG
CAGGCAAACCACAGACGCAGGCTCCCCTTCTTTACCCACCCCTTCCACTG
TGTCGCCCGACAAGACGGCGTTGCGGTGGCTGGAGACCAGTGCCACACGC
CCCAAGCTCTACCACGCACCGGAGCGACTGGGTGCGGGCCATTATCATCA
TGCACACCACGAGATTCTAACGCCCGACCACGCTCAGCGGCAATACACGC
TCATTATGCAGGACTTGAGTAAGAAGGATCCAGAATGGCTGGATGACCTG
CCGCTTTTTGGTGCGCCCGCTGCCTCGTTTCACGACCATCCCTTGACGCG
GGAGCAGGAAGCTGCAAGCCGGCGGGTCTTGAATGTGTTGGGTAACACGT
TGGAAATTGACTACTGTCCACTCCTTTTAGACTTGGTTCCTCTCTTAATG
GTGATCATGGAGACTTGCGAGTCCTCTTCAGTGCCGGCCGGCTCTGCCGC
GGCCTTGCGCGCTGAGGCAGTGGTGTACGCAGTGGTGCGCAACATGCATC
TGCATCGTCCTTTTTATTTTGGTACGGGCCATCATCAATTTCTTGCGACA
CTGGCTGCGTTTCGCGACTACATGCGCAGGTACTTTCCTGAAACAGCAGC
GTGCATGGCGGCAGTGGGGGCTGATACGGAGGACTGGCTCGGCGTTATCT
TTTATAGATGCCTAGTGCCTTTGGTTGCTCATCGGGATTTGCTACGCCTT
CTCGAACTTTTTTTGGAGGACGGTGTGTGTTTCTTTTTCAGGTTTACCTT
ATGTTTGTTCAAAGAGATGAAGTGGAGGCTCAAAAGCATGGAGCTGGAGA
GAGCGGCTTTATGGTGGGATCAGCTTGCTGATATTACTTTTAGCATTGAC
TTTGACATCGACCAAGGACTTGGTACAGTATTGGCTCAATATGGGACGAT
GGTCAAGCGGAGCAACCTTGATCGTCTGCTTGCCCTCCGGATGAGTGACC
CCATCGAACGAGAGCTGATCGTGAAACAAGACATCCAACCCTTACGAATG
CATGGCCTTGGTCTAGTAGCGGATGTGAATGGCAGCACCAGCATACTGCA
CAACAAGCGCACCTATCTCAAGCTCCTAGCCAGTTTTCTTCCCCTCCACC
AACGCCAACGCAAGCTGAGCATGCTCTTCTCCAGTGACCGGCACGGGCGT
AGCCTCGACTCATTGTATCGCATGTGTGGAAATAAGCACCCATGCATCCT
CATTATTGAAGAATACAAGCACGGACATGTCATTGGTGCTTACTGTCCTG
ATCCCATCAATCCTGGCAACGCGGTAAGCGGGACAGGCGTTGCCTTTCTT
TTTCGGTTGACAAGACCAGCGGTGCGGTACAGCTGGGCAAGAGATGCCAC
GCAGACGGTGGAGTCGGACATGTTCCAATTGGCAACGAAAAAATTCTTTG
CAGTAGGCATGAGCAATGATACGGACCATCCTGGGTTGAAAGTGGATGCA
GATTTGGAGACGGGAAGTAGTCACTATTCCCGGACATTCGCGAATTTGCC
TTTGTGTGGCCGGGGACAGGAGAAATTTGGAATTCGACATGTGGAGGTCC
ACACCATTGTGACGCAGCCTAATGAGACAGATTAA
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Coding sequence (CDS) from alignment at chr2:1018581..1020215+

>NO02G03770.1 ID=NO02G03770.1|Name=NO02G03770.1|organism=Nannochloropsis oceanica|type=CDS|length=1635bp|location=Sequence derived from alignment at chr2:1018581..1020215+ (Nannochloropsis oceanica)
ATGCCAACCTTGAGCCCAGCGCTGGTATCCCCACGGAGCTCTGTCGCCGG
CAGGCAAACCACAGACGCAGGCTCCCCTTCTTTACCCACCCCTTCCACTG
TGTCGCCCGACAAGACGGCGTTGCGGTGGCTGGAGACCAGTGCCACACGC
CCCAAGCTCTACCACGCACCGGAGCGACTGGGTGCGGGCCATTATCATCA
TGCACACCACGAGATTCTAACGCCCGACCACGCTCAGCGGCAATACACGC
TCATTATGCAGGACTTGAGTAAGAAGGATCCAGAATGGCTGGATGACCTG
CCGCTTTTTGGTGCGCCCGCTGCCTCGTTTCACGACCATCCCTTGACGCG
GGAGCAGGAAGCTGCAAGCCGGCGGGTCTTGAATGTGTTGGGTAACACGT
TGGAAATTGACTACTGTCCACTCCTTTTAGACTTGGTTCCTCTCTTAATG
GTGATCATGGAGACTTGCGAGTCCTCTTCAGTGCCGGCCGGCTCTGCCGC
GGCCTTGCGCGCTGAGGCAGTGGTGTACGCAGTGGTGCGCAACATGCATC
TGCATCGTCCTTTTTATTTTGGTACGGGCCATCATCAATTTCTTGCGACA
CTGGCTGCGTTTCGCGACTACATGCGCAGGTACTTTCCTGAAACAGCAGC
GTGCATGGCGGCAGTGGGGGCTGATACGGAGGACTGGCTCGGCGTTATCT
TTTATAGATGCCTAGTGCCTTTGGTTGCTCATCGGGATTTGCTACGCCTT
CTCGAACTTTTTTTGGAGGACGGTGTGTGTTTCTTTTTCAGGTTTACCTT
ATGTTTGTTCAAAGAGATGAAGTGGAGGCTCAAAAGCATGGAGCTGGAGA
GAGCGGCTTTATGGTGGGATCAGCTTGCTGATATTACTTTTAGCATTGAC
TTTGACATCGACCAAGGACTTGGTACAGTATTGGCTCAATATGGGACGAT
GGTCAAGCGGAGCAACCTTGATCGTCTGCTTGCCCTCCGGATGAGTGACC
CCATCGAACGAGAGCTGATCGTGAAACAAGACATCCAACCCTTACGAATG
CATGGCCTTGGTCTAGTAGCGGATGTGAATGGCAGCACCAGCATACTGCA
CAACAAGCGCACCTATCTCAAGCTCCTAGCCAGTTTTCTTCCCCTCCACC
AACGCCAACGCAAGCTGAGCATGCTCTTCTCCAGTGACCGGCACGGGCGT
AGCCTCGACTCATTGTATCGCATGTGTGGAAATAAGCACCCATGCATCCT
CATTATTGAAGAATACAAGCACGGACATGTCATTGGTGCTTACTGTCCTG
ATCCCATCAATCCTGGCAACGCGGTAAGCGGGACAGGCGTTGCCTTTCTT
TTTCGGTTGACAAGACCAGCGGTGCGGTACAGCTGGGCAAGAGATGCCAC
GCAGACGGTGGAGTCGGACATGTTCCAATTGGCAACGAAAAAATTCTTTG
CAGTAGGCATGAGCAATGATACGGACCATCCTGGGTTGAAAGTGGATGCA
GATTTGGAGACGGGAAGTAGTCACTATTCCCGGACATTCGCGAATTTGCC
TTTGTGTGGCCGGGGACAGGAGAAATTTGGAATTCGACATGTGGAGGTCC
ACACCATTGTGACGCAGCCTAATGAGACAGATTAA
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Synonyms
Publications