NO02G03750.1, NO02G03750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03750.1
Unique NameNO02G03750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1533
Alignment locationchr2:1014608..1016140 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1014608..1016140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03750.1 vs.
Match: EWM30227.1 (hypothetical protein Naga_100003g100 [Nannochloropsis gaditana])

HSP 1 Score: 370.5 bits (950), Expect = 8.100e-99
Identity = 277/511 (54.21%), Postives = 329/511 (64.38%), Query Frame = 0 
Query:    1 MGMPSNRSGPGNNSDSTITPSTSTSTMSATPSGPSFKVDTNKTAAGAALGPPPAS--VNTATAGAAGCASSTLNGISS-HGNGNSSSNTHHRSAKLHDGAARIANTTTTTTSKIKVEEPTNG----GGSMEAASAAVDGKDALIQHELNALLSQKRDAAADGRSQDSSPASSTSSTPTTAPSMMPTTMNAPLFKPSPTAAA-SLSSSPAVPTTGGGAGKGLMQVAASRPLPTSSSSSATAQAPLAATRHSTRGATAAAAAAGISKSIEEACHAAALEDGVLGSKGGGGGGAVGGGGGGGAGHGHAKQGGGGIGNGGVSSSTAASNGSGKPGKAKNGLRRGKWTPEEEAYANRLIVEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGQNCIGKQVFRRRQQAEMDRLSPEEIERSRQELAELERRFLERVAQTNRCKNSAVGTKHGKDSASGQVAPEVLRRQQEYLGPGGQVVGNPLLPPWMLPPTADASMEGGEGIQGGDGHSNSS 504
            M MP+NRSGPG +S        +   +  T   P  K ++ K  A   LG P A+   +     A G  SS  NG+ + +G+G SS        +    A++   T         ++  T+G      S +AA+A     DALIQ ELNA++ QKR+     RS++S     T   P+T+P  +P   +    +P P  A+ +L +SP  P   G   +G  Q  ++R  P     SA AQA +  TRHSTRGATAAAAA GISKSIEEACHAAALEDGVL SKGGG   A         G+G+AKQG   +  G  S+ T+A+    K GK KNGLRRGKWTPEEEAYANRLIVEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGQNCIGKQVFRRRQQA++DRLS +EIERSRQELAELERRFLERVAQTNRCKNS  G+KHGKDSA+GQVAPEV RRQQEYLGP G++VGNP+LPPWMLPP A A+ EG          SN S
Sbjct:   80 MEMPTNRSGPGTDSGEKCPNPPTVGALVTTTLSP--KSESPKRVAVPTLGAPVAAPPASAVAVAARGHGSSLQNGLPARNGDGGSSLTPTSGPREFLQVASKPPGTEMPA-----LDASTSGLIHKPASSDAATALSQHHDALIQRELNAIIGQKREHR--DRSEES-----TVLLPSTSPISVPVPRHQSSARPGPGPASHALPASP--PAQAGSNARGSGQTVSNRSPP-----SANAQALMPPTRHSTRGATAAAAA-GISKSIEEACHAAALEDGVLSSKGGGALNA---------GYGNAKQGSV-VSPGETSALTSAN----KAGKVKNGLRRGKWTPEEEAYANRLIVEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGQNCIGKQVFRRRQQADLDRLSTDEIERSRQELAELERRFLERVAQTNRCKNSVAGSKHGKDSAAGQVAPEVPRRQQEYLGPDGRIVGNPVLPPWMLPPAAQAANEGEPASASTTPRSNCS 554
The following BLAST results are available for this feature:
BLAST of NO02G03750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30227.18.100e-9954.21hypothetical protein Naga_100003g100 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03750NO02G03750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03750.1NO02G03750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03750.1.cds1NO02G03750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03750.1 ID=NO02G03750.1|Name=NO02G03750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1533bp
ATGGGGATGCCTAGCAACCGAAGCGGGCCAGGAAACAATAGTGACAGCAC
CATCACCCCCAGCACTAGCACGAGCACTATGTCAGCCACTCCATCGGGGC
CGTCCTTTAAGGTGGACACCAACAAGACCGCTGCCGGGGCCGCACTGGGG
CCCCCACCGGCCTCGGTCAACACGGCCACAGCGGGCGCAGCAGGTTGTGC
ATCCTCCACCCTTAATGGCATCAGCAGCCATGGTAACGGCAACAGCAGCA
GCAACACACATCACAGGTCCGCCAAGCTGCACGATGGGGCAGCCCGCATT
GCCAATACGACGACGACCACCACTAGCAAAATAAAAGTGGAGGAACCAAC
CAACGGTGGTGGAAGCATGGAGGCCGCATCAGCGGCGGTCGATGGCAAGG
ACGCTCTCATTCAGCATGAACTCAATGCGCTACTCAGCCAAAAGCGTGAC
GCCGCTGCTGATGGCCGTAGCCAAGATTCCTCCCCTGCCTCATCCACTTC
CTCCACCCCAACGACCGCCCCATCCATGATGCCTACGACCATGAACGCCC
CTCTCTTCAAACCTTCTCCTACTGCTGCTGCTTCTTTGTCTTCGTCACCA
GCAGTGCCAACCACCGGAGGAGGAGCAGGGAAAGGGCTTATGCAAGTCGC
TGCCTCCAGACCCCTCCCTACCTCATCGTCGTCGTCCGCAACAGCGCAGG
CCCCCCTGGCCGCCACGCGGCATTCGACGAGAGGCGCAACGGCGGCGGCA
GCAGCAGCGGGGATCAGCAAGTCCATTGAGGAGGCCTGTCATGCCGCTGC
CCTAGAAGATGGTGTGCTTGGATCCAAAGGAGGGGGGGGCGGGGGAGCGG
TAGGAGGAGGTGGTGGAGGAGGGGCAGGACATGGCCATGCCAAGCAAGGT
GGGGGAGGAATTGGTAATGGAGGCGTATCGTCGTCAACGGCAGCTAGTAA
TGGCAGTGGGAAACCGGGGAAGGCTAAGAATGGATTGAGGAGAGGGAAAT
GGACGCCGGAGGAGGAGGCGTATGCAAATCGATTAATCGTGGAATTCAAG
TCGGGGTTGTTGCCATTGACGGATGGTACGACATTGAGGACATTTTTGAG
TAAGCTGCTTAATTGTGATCCTATGAGGATAAGCAAAAAATTTGTGGGTC
AGAATTGCATCGGAAAGCAAGTGTTTCGTCGGCGGCAGCAAGCAGAGATG
GACAGGTTGTCCCCTGAAGAGATTGAACGGAGTCGACAAGAACTTGCCGA
ACTAGAGAGACGATTTTTGGAGCGCGTGGCTCAGACAAATCGATGTAAGA
ATTCTGCTGTGGGGACGAAGCATGGGAAAGACTCGGCGTCGGGTCAGGTG
GCGCCGGAGGTGTTGCGACGACAGCAAGAGTACCTGGGCCCAGGTGGGCA
GGTGGTGGGTAATCCCCTCCTCCCCCCCTGGATGCTCCCTCCCACCGCGG
ATGCATCGATGGAGGGAGGGGAGGGCATTCAAGGTGGAGATGGTCATTCG
AATTCCTCGCCAGAGAGGGGGGGATGGGGATGA
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protein sequence of NO02G03750.1

>NO02G03750.1-protein ID=NO02G03750.1-protein|Name=NO02G03750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=511bp
MGMPSNRSGPGNNSDSTITPSTSTSTMSATPSGPSFKVDTNKTAAGAALG
PPPASVNTATAGAAGCASSTLNGISSHGNGNSSSNTHHRSAKLHDGAARI
ANTTTTTTSKIKVEEPTNGGGSMEAASAAVDGKDALIQHELNALLSQKRD
AAADGRSQDSSPASSTSSTPTTAPSMMPTTMNAPLFKPSPTAAASLSSSP
AVPTTGGGAGKGLMQVAASRPLPTSSSSSATAQAPLAATRHSTRGATAAA
AAAGISKSIEEACHAAALEDGVLGSKGGGGGGAVGGGGGGGAGHGHAKQG
GGGIGNGGVSSSTAASNGSGKPGKAKNGLRRGKWTPEEEAYANRLIVEFK
SGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGQNCIGKQVFRRRQQAEM
DRLSPEEIERSRQELAELERRFLERVAQTNRCKNSAVGTKHGKDSASGQV
APEVLRRQQEYLGPGGQVVGNPLLPPWMLPPTADASMEGGEGIQGGDGHS
NSSPERGGWG*
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mRNA from alignment at chr2:1014608..1016140+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03750.1 ID=NO02G03750.1|Name=NO02G03750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1533bp|location=Sequence derived from alignment at chr2:1014608..1016140+ (Nannochloropsis oceanica)
ATGGGGATGCCTAGCAACCGAAGCGGGCCAGGAAACAATAGTGACAGCAC
CATCACCCCCAGCACTAGCACGAGCACTATGTCAGCCACTCCATCGGGGC
CGTCCTTTAAGGTGGACACCAACAAGACCGCTGCCGGGGCCGCACTGGGG
CCCCCACCGGCCTCGGTCAACACGGCCACAGCGGGCGCAGCAGGTTGTGC
ATCCTCCACCCTTAATGGCATCAGCAGCCATGGTAACGGCAACAGCAGCA
GCAACACACATCACAGGTCCGCCAAGCTGCACGATGGGGCAGCCCGCATT
GCCAATACGACGACGACCACCACTAGCAAAATAAAAGTGGAGGAACCAAC
CAACGGTGGTGGAAGCATGGAGGCCGCATCAGCGGCGGTCGATGGCAAGG
ACGCTCTCATTCAGCATGAACTCAATGCGCTACTCAGCCAAAAGCGTGAC
GCCGCTGCTGATGGCCGTAGCCAAGATTCCTCCCCTGCCTCATCCACTTC
CTCCACCCCAACGACCGCCCCATCCATGATGCCTACGACCATGAACGCCC
CTCTCTTCAAACCTTCTCCTACTGCTGCTGCTTCTTTGTCTTCGTCACCA
GCAGTGCCAACCACCGGAGGAGGAGCAGGGAAAGGGCTTATGCAAGTCGC
TGCCTCCAGACCCCTCCCTACCTCATCGTCGTCGTCCGCAACAGCGCAGG
CCCCCCTGGCCGCCACGCGGCATTCGACGAGAGGCGCAACGGCGGCGGCA
GCAGCAGCGGGGATCAGCAAGTCCATTGAGGAGGCCTGTCATGCCGCTGC
CCTAGAAGATGGTGTGCTTGGATCCAAAGGAGGGGGGGGCGGGGGAGCGG
TAGGAGGAGGTGGTGGAGGAGGGGCAGGACATGGCCATGCCAAGCAAGGT
GGGGGAGGAATTGGTAATGGAGGCGTATCGTCGTCAACGGCAGCTAGTAA
TGGCAGTGGGAAACCGGGGAAGGCTAAGAATGGATTGAGGAGAGGGAAAT
GGACGCCGGAGGAGGAGGCGTATGCAAATCGATTAATCGTGGAATTCAAG
TCGGGGTTGTTGCCATTGACGGATGGTACGACATTGAGGACATTTTTGAG
TAAGCTGCTTAATTGTGATCCTATGAGGATAAGCAAAAAATTTGTGGGTC
AGAATTGCATCGGAAAGCAAGTGTTTCGTCGGCGGCAGCAAGCAGAGATG
GACAGGTTGTCCCCTGAAGAGATTGAACGGAGTCGACAAGAACTTGCCGA
ACTAGAGAGACGATTTTTGGAGCGCGTGGCTCAGACAAATCGATGTAAGA
ATTCTGCTGTGGGGACGAAGCATGGGAAAGACTCGGCGTCGGGTCAGGTG
GCGCCGGAGGTGTTGCGACGACAGCAAGAGTACCTGGGCCCAGGTGGGCA
GGTGGTGGGTAATCCCCTCCTCCCCCCCTGGATGCTCCCTCCCACCGCGG
ATGCATCGATGGAGGGAGGGGAGGGCATTCAAGGTGGAGATGGTCATTCG
AATTCCTCGCCAGAGAGGGGGGGATGGGGATGA
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Coding sequence (CDS) from alignment at chr2:1014608..1016140+

>NO02G03750.1 ID=NO02G03750.1|Name=NO02G03750.1|organism=Nannochloropsis oceanica|type=CDS|length=1533bp|location=Sequence derived from alignment at chr2:1014608..1016140+ (Nannochloropsis oceanica)
ATGGGGATGCCTAGCAACCGAAGCGGGCCAGGAAACAATAGTGACAGCAC
CATCACCCCCAGCACTAGCACGAGCACTATGTCAGCCACTCCATCGGGGC
CGTCCTTTAAGGTGGACACCAACAAGACCGCTGCCGGGGCCGCACTGGGG
CCCCCACCGGCCTCGGTCAACACGGCCACAGCGGGCGCAGCAGGTTGTGC
ATCCTCCACCCTTAATGGCATCAGCAGCCATGGTAACGGCAACAGCAGCA
GCAACACACATCACAGGTCCGCCAAGCTGCACGATGGGGCAGCCCGCATT
GCCAATACGACGACGACCACCACTAGCAAAATAAAAGTGGAGGAACCAAC
CAACGGTGGTGGAAGCATGGAGGCCGCATCAGCGGCGGTCGATGGCAAGG
ACGCTCTCATTCAGCATGAACTCAATGCGCTACTCAGCCAAAAGCGTGAC
GCCGCTGCTGATGGCCGTAGCCAAGATTCCTCCCCTGCCTCATCCACTTC
CTCCACCCCAACGACCGCCCCATCCATGATGCCTACGACCATGAACGCCC
CTCTCTTCAAACCTTCTCCTACTGCTGCTGCTTCTTTGTCTTCGTCACCA
GCAGTGCCAACCACCGGAGGAGGAGCAGGGAAAGGGCTTATGCAAGTCGC
TGCCTCCAGACCCCTCCCTACCTCATCGTCGTCGTCCGCAACAGCGCAGG
CCCCCCTGGCCGCCACGCGGCATTCGACGAGAGGCGCAACGGCGGCGGCA
GCAGCAGCGGGGATCAGCAAGTCCATTGAGGAGGCCTGTCATGCCGCTGC
CCTAGAAGATGGTGTGCTTGGATCCAAAGGAGGGGGGGGCGGGGGAGCGG
TAGGAGGAGGTGGTGGAGGAGGGGCAGGACATGGCCATGCCAAGCAAGGT
GGGGGAGGAATTGGTAATGGAGGCGTATCGTCGTCAACGGCAGCTAGTAA
TGGCAGTGGGAAACCGGGGAAGGCTAAGAATGGATTGAGGAGAGGGAAAT
GGACGCCGGAGGAGGAGGCGTATGCAAATCGATTAATCGTGGAATTCAAG
TCGGGGTTGTTGCCATTGACGGATGGTACGACATTGAGGACATTTTTGAG
TAAGCTGCTTAATTGTGATCCTATGAGGATAAGCAAAAAATTTGTGGGTC
AGAATTGCATCGGAAAGCAAGTGTTTCGTCGGCGGCAGCAAGCAGAGATG
GACAGGTTGTCCCCTGAAGAGATTGAACGGAGTCGACAAGAACTTGCCGA
ACTAGAGAGACGATTTTTGGAGCGCGTGGCTCAGACAAATCGATGTAAGA
ATTCTGCTGTGGGGACGAAGCATGGGAAAGACTCGGCGTCGGGTCAGGTG
GCGCCGGAGGTGTTGCGACGACAGCAAGAGTACCTGGGCCCAGGTGGGCA
GGTGGTGGGTAATCCCCTCCTCCCCCCCTGGATGCTCCCTCCCACCGCGG
ATGCATCGATGGAGGGAGGGGAGGGCATTCAAGGTGGAGATGGTCATTCG
AATTCCTCGCCAGAGAGGGGGGGATGGGGATGA
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Synonyms
Publications