NO02G02500.1, NO02G02500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02500.1
Unique NameNO02G02500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1201
Alignment locationchr2:690917..692300 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:690917..692300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO02G02500.1 vs.
Match: EWM30399.1 (Uncharacterized protein family UPF0317 [Nannochloropsis gaditana])

HSP 1 Score: 395.6 bits (1015), Expect = 1.300e-106
Identity = 181/270 (67.04%), Postives = 212/270 (78.52%), Query Frame = 0 
Query:    1 MTTTTPSLQDKNISPGSLRLLAREGKFTCNTSGCCPGYVQANLVILPREHAFDFMTFCVRNFKACPLLDVTDPGNPHPPAWLVKGGADLRTDLPNYRVWQDGTLLHEVDDIRAFWRQDSVAFLLGCSFSFDEALLQAGLPVRHIQEGKNVSMYKTTIPCRPAGRFKGNMVVSMRPFHPQQVSHVIQVTSRFKAVHGAPVHVGDPAAIGIADLSRPDYGEAVLVAKGEVPVFFACGVTPQNAVLTSKPRGIVITHAPGAMFVTDVLNEALT 271
            M   TP+  D   +P +LR   R G+ T  T+GCCPG+VQANLVILP EHA +FMTFC+RN K CPLLD+TDPG+PHPP WL   GAD+RTDLP YRVWQ+G LL E DD+  +WR D V F LGCSFSF+EAL++A L VRH++EGKNV MYKT IPCRPAG F+GNMVVSMRP+ P+Q+  V +VTSR KAVHG P+H GDPAAIGI DL +PDYG+AV +A  EVPVFFACGVTPQN +L  +  GI ITHAPGAMFVTDVLN+ LT
Sbjct:    1 MIMQTPNAFD---TPAALRQKIRGGRHTGTTAGCCPGFVQANLVILPIEHALEFMTFCIRNPKPCPLLDITDPGSPHPPTWLANDGADVRTDLPMYRVWQNGKLLKEADDVTDYWRDDFVVFFLGCSFSFEEALVKANLSVRHLEEGKNVPMYKTNIPCRPAGPFQGNMVVSMRPYRPEQLGRVSEVTSRMKAVHGGPIHTGDPAAIGIIDLGQPDYGDAVSIASDEVPVFFACGVTPQNVILDCRLPGIAITHAPGAMFVTDVLNDFLT 267
The following BLAST results are available for this feature:
BLAST of NO02G02500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30399.11.300e-10667.04Uncharacterized protein family UPF0317 [Nannochlor... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02500NO02G02500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02500.1NO02G02500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02500.1.cds1NO02G02500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02500.1.cds2NO02G02500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02500.1 ID=NO02G02500.1|Name=NO02G02500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1201bp
TCATGCTTGGTTCTGTTGAGGGCTATATGTATGTGTTGTGGGGGGAGTTA
GCGCGCATGTGTGGGGACACAGGAGGCAGGAAAGTAGAAAGCCGTTGAAA
ACTTGCGTTAACGGAGAATCAAAAATCGCTTCCATCATGACCCCCGATGA
AGACGAATCACAGCCCTTGAAAGCACGTGATTCTGCCCAGAAAACCTTGA
AAGAGACTGAACCTGCCCCCGGAGGTTTTCCCCAAGGCTTCTGCTGTCCT
CCATGCCTCAAGACTTATCGCGCAAAGCCTCCCCTATGATTTCCTGATCC
ACAACAGCAGGACCCCTCCATCGCACCACTCTCAGCGTTTTCGTATGACT
ACCACCACACCATCACTACAAGACAAAAACATCAGTCCTGGATCTCTCCG
CCTGTTGGCCCGAGAAGGGAAATTCACATGCAACACTTCTGGATGCTGCC
CCGGCTACGTGCAGGCTAACCTTGTTATTTTGCCGCGCGAGCACGCCTTC
GACTTCATGACCTTTTGCGTGCGCAACTTTAAAGCCTGTCCCCTCCTAGA
TGTTACGGATCCAGGTAATCCCCACCCGCCCGCATGGCTCGTCAAGGGTG
GTGCCGATTTGCGGACAGACTTGCCAAATTATCGAGTGTGGCAAGACGGC
ACACTCCTCCATGAGGTCGATGACATTCGAGCCTTTTGGCGACAGGACTC
TGTAGCCTTCCTTCTTGGTTGCTCATTTTCCTTTGATGAAGCCCTCCTGC
AAGCCGGCCTGCCAGTACGCCACATCCAAGAAGGCAAAAATGTTTCCATG
TACAAAACTACCATCCCGTGCCGTCCCGCAGGGCGCTTCAAAGGGAATAT
GGTCGTGTCCATGCGTCCGTTTCATCCCCAGCAAGTCAGCCACGTTATCC
AAGTCACTTCCCGATTCAAGGCCGTCCATGGTGCACCAGTTCACGTGGGT
GATCCTGCCGCTATCGGCATCGCTGACTTAAGCAGACCAGATTATGGAGA
GGCTGTCTTGGTAGCCAAGGGGGAGGTGCCTGTGTTTTTTGCATGTGGTG
TCACCCCACAAAATGCCGTATTGACAAGTAAACCGAGAGGGATTGTGATT
ACACATGCCCCAGGTGCCATGTTCGTGACAGATGTGTTGAATGAGGCCTT
GACGTTGAGTTAAGCTGGACTGCAAAAGAAAGAAGAAAACGAAAAGCACG
G
back to top

protein sequence of NO02G02500.1

>NO02G02500.1-protein ID=NO02G02500.1-protein|Name=NO02G02500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MTTTTPSLQDKNISPGSLRLLAREGKFTCNTSGCCPGYVQANLVILPREH
AFDFMTFCVRNFKACPLLDVTDPGNPHPPAWLVKGGADLRTDLPNYRVWQ
DGTLLHEVDDIRAFWRQDSVAFLLGCSFSFDEALLQAGLPVRHIQEGKNV
SMYKTTIPCRPAGRFKGNMVVSMRPFHPQQVSHVIQVTSRFKAVHGAPVH
VGDPAAIGIADLSRPDYGEAVLVAKGEVPVFFACGVTPQNAVLTSKPRGI
VITHAPGAMFVTDVLNEALTLS*
back to top

mRNA from alignment at chr2:690917..692300+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02500.1 ID=NO02G02500.1|Name=NO02G02500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1384bp|location=Sequence derived from alignment at chr2:690917..692300+ (Nannochloropsis oceanica)
TCATGCTTGGTTCTGTTGAGGGCTATATGTATGTGTTGTGGGGGGAGTTA
GCGCGCATGTGTGGGGACACAGGAGGCAGGAAAGTAGAAAGCCGTTGAAA
ACTTGCGTTAACGGAGAATCAAAAATCGCTTCCATCATGACCCCCGATGA
AGACGAATCACAGCCCTTGAAAGCACGTGATTCTGCCCAGAAAACCTTGA
AAGAGACTGAACCTGCCCCCGGAGGTTTTCCCCAAGGCTTCTGCTGTCCT
CCATGCCTCAAGACTTATCGCGCAAAGCCTCCCCTATGATTTCCTGATCC
ACAACAGCAGGACCCCTCCATCGCACCACTCTCAGCGTTTTCGTATGACT
ACCACCACACCATCACTACAAGACAAAAACATCAGTCCTGGATCTCTCCG
CCTGTTGGCCCGAGAAGGGAAATTCACATGCAACACTTCTGGATGCTGCC
CCGGCTACGTGCAGGCTAACCTTGTTATTTTGCCGCGCGAGCACGCCTTC
GACTTCATGACCTTTTGCGTGCGCAACTTTAAAGCCTGTCCCCTCCTAGA
TGTTACGGATCCAGGTAATCCCCACCCGCCCGCATGGCTCGTCAAGGGTG
GTGCCGATTTGCGGACAGACTTGCCAAATTATCGAGGTACGTGTAAGGTT
TAAAGCTTCAGTGGGAGTGAAGAAATTTAAGAAAGAGAATTCGACCCATT
TTATCGAGGTGCACTCTCAAATTCCTCGGCGATACAGCCACGAAACATGA
ATTGAAGGAGTAAGAGCGTCATTCATAACTCAGCCATATATCGATCATTT
CTACCCTTCGCAACCACAGTGTGGCAAGACGGCACACTCCTCCATGAGGT
CGATGACATTCGAGCCTTTTGGCGACAGGACTCTGTAGCCTTCCTTCTTG
GTTGCTCATTTTCCTTTGATGAAGCCCTCCTGCAAGCCGGCCTGCCAGTA
CGCCACATCCAAGAAGGCAAAAATGTTTCCATGTACAAAACTACCATCCC
GTGCCGTCCCGCAGGGCGCTTCAAAGGGAATATGGTCGTGTCCATGCGTC
CGTTTCATCCCCAGCAAGTCAGCCACGTTATCCAAGTCACTTCCCGATTC
AAGGCCGTCCATGGTGCACCAGTTCACGTGGGTGATCCTGCCGCTATCGG
CATCGCTGACTTAAGCAGACCAGATTATGGAGAGGCTGTCTTGGTAGCCA
AGGGGGAGGTGCCTGTGTTTTTTGCATGTGGTGTCACCCCACAAAATGCC
GTATTGACAAGTAAACCGAGAGGGATTGTGATTACACATGCCCCAGGTGC
CATGTTCGTGACAGATGTGTTGAATGAGGCCTTGACGTTGAGTTAAGCTG
GACTGCAAAAGAAAGAAGAAAACGAAAAGCACGG
back to top

Coding sequence (CDS) from alignment at chr2:690917..692300+

>NO02G02500.1 ID=NO02G02500.1|Name=NO02G02500.1|organism=Nannochloropsis oceanica|type=CDS|length=819bp|location=Sequence derived from alignment at chr2:690917..692300+ (Nannochloropsis oceanica)
ATGACTACCACCACACCATCACTACAAGACAAAAACATCAGTCCTGGATC
TCTCCGCCTGTTGGCCCGAGAAGGGAAATTCACATGCAACACTTCTGGAT
GCTGCCCCGGCTACGTGCAGGCTAACCTTGTTATTTTGCCGCGCGAGCAC
GCCTTCGACTTCATGACCTTTTGCGTGCGCAACTTTAAAGCCTGTCCCCT
CCTAGATGTTACGGATCCAGGTAATCCCCACCCGCCCGCATGGCTCGTCA
AGGGTGGTGCCGATTTGCGGACAGACTTGCCAAATTATCGAGTGTGGCAA
GACGGCACACTCCTCCATGAGGTCGATGACATTCGAGCCTTTTGGCGACA
GGACTCTGTAGCCTTCCTTCTTGGTTGCTCATTTTCCTTTGATGAAGCCC
TCCTGCAAGCCGGCCTGCCAGTACGCCACATCCAAGAAGGCAAAAATGTT
TCCATGTACAAAACTACCATCCCGTGCCGTCCCGCAGGGCGCTTCAAAGG
GAATATGGTCGTGTCCATGCGTCCGTTTCATCCCCAGCAAGTCAGCCACG
TTATCCAAGTCACTTCCCGATTCAAGGCCGTCCATGGTGCACCAGTTCAC
GTGGGTGATCCTGCCGCTATCGGCATCGCTGACTTAAGCAGACCAGATTA
TGGAGAGGCTGTCTTGGTAGCCAAGGGGGAGGTGCCTGTGTTTTTTGCAT
GTGGTGTCACCCCACAAAATGCCGTATTGACAAGTAAACCGAGAGGGATT
GTGATTACACATGCCCCAGGTGCCATGTTCGTGACAGATGTGTTGAATGA
GGCCTTGACGTTGAGTTAA
back to top
Synonyms
Publications