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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:679891..681883 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G02460.1 vs.
Match: EWM30409.1 (pyrroline-5-carboxylate reductase [Nannochloropsis gaditana]) HSP 1 Score: 521.9 bits (1343), Expect = 1.500e-144 Identity = 270/356 (75.84%), Postives = 309/356 (86.80%), Query Frame = 0
Query: 1 MLSTRLLAITTAAVRRSALLQRHNPSTLITPLAGSTVPIRYMHRSQPAANHGDSLTDPDADAEGFDFHRIGLVGGGKMSEAIIEGFLKEQLIKPERISVFDVNRARLEFLKKEFGVGTSSSVAATCKNADLVIIAVKPQNLSDKLWAQLKEHLSPQSVLLSIVAGMTMSNFSENTGNTRIVRTMPNTPATIQQGMTVWACSDDVSLSQRNSVAKFLSSLGEQHFVQNELYLDMATAVSGSGPGYVMLILEALVDAAVHLGFSRDIASKLVLQTVYGTTALAMKSGLHPAILRNSVTSPGGTTASALYVLEQGRFRTVLADALWSAYRRSLELGHMDSNVGPGRAKHEPHEMDGHKK 357
ML TRL I A RR+ L+QRH PS T +TV R++HRSQ A +H DS DP A+AEGFDF+RIGLVGGGKMSEAIIEGF+ E+LI+PE+ISV+DV+R RL++L K FGV SSS+AA CK++DLVIIAVKPQNL+ KLW QL+ +L P+SV+LSIVAG+ MSNF E+TGN R+VRTMPNTPATIQQGMTVWAC+D VS+SQRNSVAKFLSSLGEQHFV +E YLDMATAVSGSGPGYV+LILEAL+DAAVHLGF+R++ASKLVLQTV GTT LAMKSGLHPAILRNSVTSPGGTTASALYVLEQGRFRTVLAD+ WSAYRRSLELGHMDSNVGPGR++H+ HE D HKK
Sbjct: 1 MLPTRLAGI---AARRAFLMQRHIPSNANTTAMSATV--RWIHRSQAALSHDDSKPDPVANAEGFDFNRIGLVGGGKMSEAIIEGFVTEKLIQPEKISVYDVSRKRLDYLMKTFGVQASSSLAAACKDSDLVIIAVKPQNLTQKLWTQLRANLDPKSVVLSIVAGIPMSNFVESTGNKRVVRTMPNTPATIQQGMTVWACTDHVSVSQRNSVAKFLSSLGEQHFVHDEQYLDMATAVSGSGPGYVLLILEALIDAAVHLGFARNVASKLVLQTVSGTTTLAMKSGLHPAILRNSVTSPGGTTASALYVLEQGRFRTVLADSFWSAYRRSLELGHMDSNVGPGRSRHDAHETDSHKK 351
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G02460.1 ID=NO02G02460.1|Name=NO02G02460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1427bp AGCCCAAGTAGTACAGGTCCAGGTTCTTCTGCTGTCCTTTTGACAGCCTG CCTCGCTTCCTTCCATTCGCTGCCCCCTTCAACACACGTCCACACATATA CTTCCCAGCCATGCTGTCGACCCGCCTCCTGGCCATCACGACGGCTGCTG TCCGCCGCTCTGCTTTGTTGCAGAGACACAATCCAAGCACTCTGATCACG CCGCTGGCGGGTTCGACGGTGCCCATTCGATACATGCATCGAAGCCAGCC CGCTGCAAATCACGGCGACTCCCTTACTGATCCCGATGCGGACGCAGAGG GCTTTGACTTTCATCGAATTGGCCTGGTTGGGGGGGGCAAAATGAGCGAA GCCATTATCGAAGGCTTTCTGAAGGAGCAACTGATTAAACCCGAAAGGAT TTCTGTCTTCGACGTAAATCGCGCAAGGCTTGAATTCCTGAAGAAGGAAT TTGGAGTGGGAACCTCGTCCTCAGTCGCCGCTACGTGTAAGAATGCGGAT TTGGTCATCATTGCTGTCAAGCCCCAGAATTTATCTGACAAGCTGTGGGC ACAACTGAAGGAGCACTTGTCTCCGCAGTCAGTATTATTGAGTATCGTGG CCGGCATGACCATGTCGAACTTTAGCGAGAACACCGGCAACACACGCATA GTCCGTACGATGCCCAATACCCCCGCCACCATCCAACAAGGAATGACTGT CTGGGCGTGCAGCGACGACGTTAGCCTCTCCCAACGGAACTCGGTCGCCA AGTTTCTGTCGAGTTTGGGGGAGCAGCACTTTGTCCAAAATGAGCTTTAT CTAGACATGGCCACGGCGGTCAGTGGGTCAGGGCCGGGGTATGTGATGCT TATCCTCGAGGCACTCGTTGACGCGGCGGTACATCTCGGCTTCTCCCGCG ACATCGCCTCCAAGCTCGTCCTTCAGACGGTCTACGGGACCACGGCCCTC GCTATGAAAAGCGGGCTCCACCCGGCCATACTTCGCAACAGCGTCACGAG TCCAGGAGGGACGACAGCTTCGGCATTGTACGTATTAGAGCAAGGGCGGT TCCGTACTGTGCTGGCTGACGCGTTGTGGAGTGCCTATCGACGGAGTTTG GAGCTGGGTCATATGGACAGTAACGTCGGTCCGGGTAGAGCAAAGCACGA GCCGCACGAGATGGATGGGCATAAGAAGTAGGGAGGGAGGGAGGGAGGGA GGGAGGGGAAGAAATGAGGGTGGAGGAGATCTCAAATAACTGAAAGTCGT GAAATTGAACCAAGAAAATCGAAGCAAGAGGATCAAACGCACAGCCTCAG TAAGGTATCACAAATTAGAACAGATGGAGAAAATAGGCCACGCTGCGTAC GCACGTACCAATCAAAACAGTAAAAAGGTGGTTTGAGGTGTGAAAGGAAT GACATTTGCGAGGAGTGATGAGATAAC back to topprotein sequence of NO02G02460.1 >NO02G02460.1-protein ID=NO02G02460.1-protein|Name=NO02G02460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp MLSTRLLAITTAAVRRSALLQRHNPSTLITPLAGSTVPIRYMHRSQPAAN HGDSLTDPDADAEGFDFHRIGLVGGGKMSEAIIEGFLKEQLIKPERISVF DVNRARLEFLKKEFGVGTSSSVAATCKNADLVIIAVKPQNLSDKLWAQLK EHLSPQSVLLSIVAGMTMSNFSENTGNTRIVRTMPNTPATIQQGMTVWAC SDDVSLSQRNSVAKFLSSLGEQHFVQNELYLDMATAVSGSGPGYVMLILE ALVDAAVHLGFSRDIASKLVLQTVYGTTALAMKSGLHPAILRNSVTSPGG TTASALYVLEQGRFRTVLADALWSAYRRSLELGHMDSNVGPGRAKHEPHE MDGHKK* back to topmRNA from alignment at chr2:679891..681883+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G02460.1 ID=NO02G02460.1|Name=NO02G02460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1993bp|location=Sequence derived from alignment at chr2:679891..681883+ (Nannochloropsis oceanica) AGCCCAAGTAGTACAGGTCCAGGTTCTTCTGCTGTCCTTTTGACAGCCTG
CCTCGCTTCCTTCCATTCGCTGCCCCCTTCAACACACGTCCACACATATA
CTTCCCAGCCATGCTGTCGACCCGCCTCCTGGCCATCACGACGGCTGCTG
TCCGCCGCTCTGCTTTGTTGCAGAGACACAATCCAAGCACTCTGATCACG
CCGCTGGCGGGTTCGACGGTGCCCATTCGATACATGCATCGAAGCCAGCC
CGCTGCAAATCACGGCGACTCCCTTACTGATCCCGATGCGGACGCAGAGG
GCTTTGACTTTCATCGAATTGGCCTGGTTGGGGGGGGCAAAATGAGCGAA
GCCATTATCGAAGGCTTTCTGAAGGAGCAACTGATTAAACCCGAAAGGAT
TTCTGTCTTCGACGTAAATCGCGCAAGGCTTGAATTCCTGAAGAAGGAAT
TTGGAGTGGGAACCTCGTCCTCAGTCGCCGCTACGTGTAAGAATGCGGAT
TTGGTCATCATTGCTGTCAAGCCCCAGAATTTATCTGACAAGCTGTGGGC
ACAACTGAAGGAGCACTTGTCTCCGCAGTCAGTATTATTGAGTATCGTGG
CCGGTAAGAATGGGGGCGTGGGGGAACAAAGGGAGTGAATAGGTTGCACC
TGTAGAGACGAAATGAGGCGAAGCTGTAATTCTCCTGAGGAATAGGATCA
AGGGCGATGAGGATGAAGGGGCATTTCAGTTTGCGAGATAAGACGAAGTC
TCAACCCCCCTCCCCTCCCCCCCCTCACTCAGGCATGACCATGTCGAACT
TTAGCGAGAACACCGGCAACACACGCATAGTCCGTACGATGCCCAATACC
CCCGCCACCATCCAACAAGGAATGACTGTCTGGGCGTGCAGCGACGACGT
TAGCCTCTCCCAACGGAACTCGGTCGCCAAGTTTCTGTCGAGTTTGGGGG
AGCAGCACTTTGTCCAAAATGAGCTTTATCTAGACATGGCCACGGCGGTC
AGTGGGTCAGGGCCGGGGTATGTGATGCTTATCCTCGAGGCACTCGTTGA
CGCGGGTACGTGACTGCCGTTTCAAGGGGTTGGAAGAGGGGGAAATGTCG
TGGCCCGGTGGATATTGAGTCCGTCGCAGATGTGTTGGACGACAAAGCTG
ACAAATATCCACCAAGCCACGATAACAACATCCCATCCATAATCAAATAG
ACCAGCTGAACACATAGGCCGCACACTTATTGGCACCATTAAGGCATGGA
GGTCGGGCATGAAGGGGAAATAACTCACTTGCCCCCGTCCCACGTCTTTA
AAATGCGAATAAGTGTGCGGTTCATGCGTTCAACTGGTCCATTTGATTTT
GGATGGGCTACGCGATTCTTCTGCTTTTTCATGCAGGCGTGTATACCACT
TATCACCATCAACTAATGTCCCTTCCTGCCTGTTCACAACAGCGGTACAT
CTCGGCTTCTCCCGCGACATCGCCTCCAAGCTCGTCCTTCAGACGGTCTA
CGGGACCACGGCCCTCGCTATGAAAAGCGGGCTCCACCCGGCCATACTTC
GCAACAGCGTCACGAGTCCAGGAGGGACGACAGCTTCGGCATTGTACGTA
TTAGAGCAAGGGCGGTTCCGTACTGTGCTGGCTGACGCGTTGTGGAGTGC
CTATCGACGGAGTTTGGAGCTGGGTCATATGGACAGTAACGTCGGTCCGG
GTAGAGCAAAGCACGAGCCGCACGAGATGGATGGGCATAAGAAGTAGGGA
GGGAGGGAGGGAGGGAGGGAGGGGAAGAAATGAGGGTGGAGGAGATCTCA
AATAACTGAAAGTCGTGAAATTGAACCAAGAAAATCGAAGCAAGAGGATC
AAACGCACAGCCTCAGTAAGGTATCACAAATTAGAACAGATGGAGAAAAT
AGGCCACGCTGCGTACGCACGTACCAATCAAAACAGTAAAAAGGTGGTTT
GAGGTGTGAAAGGAATGACATTTGCGAGGAGTGATGAGATAAC back to topCoding sequence (CDS) from alignment at chr2:679891..681883+ >NO02G02460.1 ID=NO02G02460.1|Name=NO02G02460.1|organism=Nannochloropsis oceanica|type=CDS|length=1071bp|location=Sequence derived from alignment at chr2:679891..681883+ (Nannochloropsis oceanica) ATGCTGTCGACCCGCCTCCTGGCCATCACGACGGCTGCTGTCCGCCGCTC TGCTTTGTTGCAGAGACACAATCCAAGCACTCTGATCACGCCGCTGGCGG GTTCGACGGTGCCCATTCGATACATGCATCGAAGCCAGCCCGCTGCAAAT CACGGCGACTCCCTTACTGATCCCGATGCGGACGCAGAGGGCTTTGACTT TCATCGAATTGGCCTGGTTGGGGGGGGCAAAATGAGCGAAGCCATTATCG AAGGCTTTCTGAAGGAGCAACTGATTAAACCCGAAAGGATTTCTGTCTTC GACGTAAATCGCGCAAGGCTTGAATTCCTGAAGAAGGAATTTGGAGTGGG AACCTCGTCCTCAGTCGCCGCTACGTGTAAGAATGCGGATTTGGTCATCA TTGCTGTCAAGCCCCAGAATTTATCTGACAAGCTGTGGGCACAACTGAAG GAGCACTTGTCTCCGCAGTCAGTATTATTGAGTATCGTGGCCGGCATGAC CATGTCGAACTTTAGCGAGAACACCGGCAACACACGCATAGTCCGTACGA TGCCCAATACCCCCGCCACCATCCAACAAGGAATGACTGTCTGGGCGTGC AGCGACGACGTTAGCCTCTCCCAACGGAACTCGGTCGCCAAGTTTCTGTC GAGTTTGGGGGAGCAGCACTTTGTCCAAAATGAGCTTTATCTAGACATGG CCACGGCGGTCAGTGGGTCAGGGCCGGGGTATGTGATGCTTATCCTCGAG GCACTCGTTGACGCGGCGGTACATCTCGGCTTCTCCCGCGACATCGCCTC CAAGCTCGTCCTTCAGACGGTCTACGGGACCACGGCCCTCGCTATGAAAA GCGGGCTCCACCCGGCCATACTTCGCAACAGCGTCACGAGTCCAGGAGGG ACGACAGCTTCGGCATTGTACGTATTAGAGCAAGGGCGGTTCCGTACTGT GCTGGCTGACGCGTTGTGGAGTGCCTATCGACGGAGTTTGGAGCTGGGTC ATATGGACAGTAACGTCGGTCCGGGTAGAGCAAAGCACGAGCCGCACGAG ATGGATGGGCATAAGAAGTAG back to top
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