NO02G02000.1, NO02G02000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02000.1
Unique NameNO02G02000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1173
Alignment locationchr2:571409..572700 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:571409..572700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02000.1 vs.
Match: CBJ31384.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 152.5 bits (384), Expect = 2.700e-33
Identity = 109/321 (33.96%), Postives = 153/321 (47.66%), Query Frame = 0 
Query:  106 SSSWPEVQCIVTNVFADAFPDWWRWPGDIQGDDDSSMDAPPSRPQDETWHMLWTWSKPRMESASLLAHQQVNHIPRSQDLTRKDFLVRHLDRHMALSSSSSSSTGGSRVCGRHQKSSSLLSYTKKSTYPFFHIMPQTFALPQAYTSFVATFRDGSSFSSSSSSSFSDNISIIKPFKASRGRGIKLVNGILDVIHSEPVVIQRYVSKPLLLNGY-IDLRL----NSSVQTRKTIRGQGPPLPGNH--------------------------PLRSAP-----SADVGGSKLRLSYLWQHLRDGHGIDTSAVWSEIVGMILKS 391
            S + PEV  IVT+V  +    W               + P       TW++LWTWSKP ++ +SLL  Q+VNH P S++LTRKD L +H+ R MA               GR  K               FHIMPQTF LP  +T FV+ F        +SSS   +N+ I+KP   SRGRGI+L++ I D+ +++ VV+QRY+  PLLL+GY  DLRL     S  +    I  +G      H                            R +P     +++ GG+K  LSYLW+ L    G+D  A+W+EI  +++KS
Sbjct:  703 SKARPEVYNIVTDVLNNRCQQW--------------EELPTGLGLKTTWNLLWTWSKPHIQYSSLLTWQKVNHFPNSRELTRKDLLNKHVSRFMAPG-------------GRLAKE--------------FHIMPQTFVLPHEFTLFVSAF--------TSSSGTRENLWIMKPVGMSRGRGIRLIDDIKDICYADKVVLQRYIGNPLLLDGYKFDLRLYVLVTSFNKLEAFIYKEGFARLSTHRYEKGAIDNRFIHLTNSSIQRLNEAGAARDSPLNQAKTSEAGGTKTTLSYLWRRLA-ASGVDVGALWAEICSVVVKS 973
The following BLAST results are available for this feature:
BLAST of NO02G02000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ31384.12.700e-3333.96conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02000NO02G02000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02000.1NO02G02000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02000.1.cds1NO02G02000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02000.1.cds2NO02G02000.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02000.1 ID=NO02G02000.1|Name=NO02G02000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1173bp
ATGACCTTGCTTCGAAAGGAGCTTGGGAGGAAGGATGAGGCATCAAAAGG
GGGAGGGCCGCTGAACGCCTTATTCTGTCACACGTATGCACGCCGCCAAC
TCGAGGCAATGGTGCAGGAGCTGGACCAAAGAGATGCGATGATGGACCAG
TACATAAAAAAGGAGAAATACCTATTTTTGTCTTCAGAAGCAGCTCCTCA
AAGAAAGAAAACAGCTCGTCCCCATGGCAGGACAAATGTGAAGACTTGGC
CACCACTATTATCTCTAGCTCGCTTCCTGAAAGCACCATCGCCACCGCCT
GCCACATCTGCTGCGTCATCTTCTTGGCCAGAGGTTCAGTGCATAGTAAC
CAACGTTTTTGCTGATGCATTTCCTGACTGGTGGCGCTGGCCTGGGGATA
TTCAGGGTGATGACGACAGCAGCATGGATGCACCACCATCCAGGCCGCAA
GACGAAACATGGCATATGCTCTGGACCTGGAGCAAGCCCCGGATGGAGTC
TGCGTCTCTGCTCGCCCACCAGCAAGTAAATCATATTCCCCGCTCGCAGG
ATCTGACGCGCAAGGACTTCCTCGTCCGGCACTTGGACAGGCACATGGCT
TTGAGCAGCAGCAGCAGCAGCAGCACGGGTGGTTCGCGAGTTTGCGGCAG
GCACCAAAAATCCTCCTCTCTACTCAGTTACACAAAGAAATCGACATATC
CTTTCTTCCACATCATGCCTCAAACGTTTGCTTTGCCACAGGCCTACACA
AGCTTCGTCGCCACCTTCCGCGATGGGTCCAGCTTTTCCTCCTCCTCCTC
CTCATCTTTCTCGGACAACATTTCGATTATTAAACCTTTCAAGGCTTCGC
GAGGACGTGGCATTAAACTGGTGAATGGTATTCTGGACGTTATCCATAGC
GAGCCTGTCGTAATACAAAGATATGTGAGTAAGCCTTTGCTTCTGAACGG
CTACATTGACCTGCGGCTCAACAGTAGTGTCCAGACACGCAAAACCATTC
GAGGTCAAGGCCCGCCTCTGCCGGGCAACCACCCTCTCCGATCAGCACCA
TCTGCGGATGTGGGCGGAAGCAAGCTGCGGCTGTCCTACCTGTGGCAGCA
CTTGAGGGATGGCCACGGGATTGACACTTCTGCTGTATGGAGTGAAATTG
TGGGTATGATTCTTAAGAGCTAG
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protein sequence of NO02G02000.1

>NO02G02000.1-protein ID=NO02G02000.1-protein|Name=NO02G02000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp
MTLLRKELGRKDEASKGGGPLNALFCHTYARRQLEAMVQELDQRDAMMDQ
YIKKEKYLFLSSEAAPQRKKTARPHGRTNVKTWPPLLSLARFLKAPSPPP
ATSAASSSWPEVQCIVTNVFADAFPDWWRWPGDIQGDDDSSMDAPPSRPQ
DETWHMLWTWSKPRMESASLLAHQQVNHIPRSQDLTRKDFLVRHLDRHMA
LSSSSSSSTGGSRVCGRHQKSSSLLSYTKKSTYPFFHIMPQTFALPQAYT
SFVATFRDGSSFSSSSSSSFSDNISIIKPFKASRGRGIKLVNGILDVIHS
EPVVIQRYVSKPLLLNGYIDLRLNSSVQTRKTIRGQGPPLPGNHPLRSAP
SADVGGSKLRLSYLWQHLRDGHGIDTSAVWSEIVGMILKS*
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mRNA from alignment at chr2:571409..572700+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02000.1 ID=NO02G02000.1|Name=NO02G02000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1292bp|location=Sequence derived from alignment at chr2:571409..572700+ (Nannochloropsis oceanica)
ATGACCTTGCTTCGAAAGGAGCTTGGGAGGAAGGATGAGGCATCAAAAGG
GGGAGGGCCGCTGAACGCCTTATTCTGTCACACGTATGCACGCCGCCAAC
TCGAGGCAATGGTGCAGGAGCTGGACCAAAGAGATGCGATGATGGACCAG
TACATAAAAAAGGAGAAATACCTATTTTTGTCTTCAGAAGCAGCTCCTCA
AAGAAAGAAAACAGCTCGTCCCCATGGCAGGACAAATGTGAAGACTTGGC
CACCACTATTATCTCTAGCTCGCTTCCTGAAAGCACCATCGCCACCGCCT
GCCACATCTGCTGCGTCATCTTCTTGGCCAGAGGTTCAGTGCATAGTAAC
CAACGTTTTTGCTGATGCATTTCCTGACTGGTGGCGCTGGCCTGGGGATA
TTCAGGGTGATGACGACAGCAGCATGGATGCACCACCATCCAGGCCGCAA
GACGAAACATGGCATATGCTCTGGACCTGGAGCAAGCCCCGGATGGAGTC
TGCGTCTCTGCTCGCCCACCAGCAAGTAAATCATATTCCCCGCTCGCAGG
ATCTGACGCGCAAGGACTTCCTCGTCCGGCACTTGGACAGGCACATGGCT
TTGAGCAGCAGCAGCAGCAGCAGCACGGGTGGTTCGCGAGTTTGCGGCAG
GCACCAAAAATCCTCCTCTCTACTCAGTTACACAAAGAAATCGACATATC
CTTTCTTCCACATCATGCCTCAAACGTTTGCTTTGCCACAGGCCTACACA
AGCTTCGTCGCCACCTTCCGCGATGGGTCCAGCTTTTCCTCCTCCTCCTC
CTCATCTTTCTCGGACAACATTTCGATTATTAAACCTTTCAAGGCTTCGC
GAGGACGTGGCATTAAACTGGTGAATGGTATTCTGGACGTTATCCATAGC
GAGCCTGTCGTAATACAAAGATATGTGAGTAAGCCTTTGCTTCTGAACGG
CTACATTGACCTGCGGCTGTACGTGCTCGTCAATTCCTTCCAACCGACCC
TCGAGGCCTTTACACAGAGGGTTTTGCTCGTTTTTGCACGGCGCCCTTCG
AGCTCTACGACTTGAGCAATAAACTTCCACACGTCAGCAACAGTAGTGTC
CAGACACGCAAAACCATTCGAGGTCAAGGCCCGCCTCTGCCGGGCAACCA
CCCTCTCCGATCAGCACCATCTGCGGATGTGGGCGGAAGCAAGCTGCGGC
TGTCCTACCTGTGGCAGCACTTGAGGGATGGCCACGGGATTGACACTTCT
GCTGTATGGAGTGAAATTGTGGGTATGATTCTTAAGAGCTAG
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Coding sequence (CDS) from alignment at chr2:571409..572700+

>NO02G02000.1 ID=NO02G02000.1|Name=NO02G02000.1|organism=Nannochloropsis oceanica|type=CDS|length=1173bp|location=Sequence derived from alignment at chr2:571409..572700+ (Nannochloropsis oceanica)
ATGACCTTGCTTCGAAAGGAGCTTGGGAGGAAGGATGAGGCATCAAAAGG
GGGAGGGCCGCTGAACGCCTTATTCTGTCACACGTATGCACGCCGCCAAC
TCGAGGCAATGGTGCAGGAGCTGGACCAAAGAGATGCGATGATGGACCAG
TACATAAAAAAGGAGAAATACCTATTTTTGTCTTCAGAAGCAGCTCCTCA
AAGAAAGAAAACAGCTCGTCCCCATGGCAGGACAAATGTGAAGACTTGGC
CACCACTATTATCTCTAGCTCGCTTCCTGAAAGCACCATCGCCACCGCCT
GCCACATCTGCTGCGTCATCTTCTTGGCCAGAGGTTCAGTGCATAGTAAC
CAACGTTTTTGCTGATGCATTTCCTGACTGGTGGCGCTGGCCTGGGGATA
TTCAGGGTGATGACGACAGCAGCATGGATGCACCACCATCCAGGCCGCAA
GACGAAACATGGCATATGCTCTGGACCTGGAGCAAGCCCCGGATGGAGTC
TGCGTCTCTGCTCGCCCACCAGCAAGTAAATCATATTCCCCGCTCGCAGG
ATCTGACGCGCAAGGACTTCCTCGTCCGGCACTTGGACAGGCACATGGCT
TTGAGCAGCAGCAGCAGCAGCAGCACGGGTGGTTCGCGAGTTTGCGGCAG
GCACCAAAAATCCTCCTCTCTACTCAGTTACACAAAGAAATCGACATATC
CTTTCTTCCACATCATGCCTCAAACGTTTGCTTTGCCACAGGCCTACACA
AGCTTCGTCGCCACCTTCCGCGATGGGTCCAGCTTTTCCTCCTCCTCCTC
CTCATCTTTCTCGGACAACATTTCGATTATTAAACCTTTCAAGGCTTCGC
GAGGACGTGGCATTAAACTGGTGAATGGTATTCTGGACGTTATCCATAGC
GAGCCTGTCGTAATACAAAGATATGTGAGTAAGCCTTTGCTTCTGAACGG
CTACATTGACCTGCGGCTCAACAGTAGTGTCCAGACACGCAAAACCATTC
GAGGTCAAGGCCCGCCTCTGCCGGGCAACCACCCTCTCCGATCAGCACCA
TCTGCGGATGTGGGCGGAAGCAAGCTGCGGCTGTCCTACCTGTGGCAGCA
CTTGAGGGATGGCCACGGGATTGACACTTCTGCTGTATGGAGTGAAATTG
TGGGTATGATTCTTAAGAGCTAG
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Synonyms
Publications