NO02G01920.1, NO02G01920.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01920.1
Unique NameNO02G01920.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2031
Alignment locationchr2:550423..552453 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:550423..552453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01920.1 vs.
Match: EWM30446.1 (gdp-mannose transporter [Nannochloropsis gaditana])

HSP 1 Score: 523.9 bits (1348), Expect = 4.400e-145
Identity = 278/391 (71.10%), Postives = 319/391 (81.59%), Query Frame = 0 
Query:    1 MSLKGIGGRGGNF-YEGRDGTVADDEEINPLMVEMRQAKGRLEGSSSLSST---TPSSSSSSRSSSSGSVATSYAATTVTSLGDPASTAIMSCFAYTFCSITMVLANKALASQYKADIDFLVIAFQSVCAVALVVGCDAVGVIQPGSTKFDRAVAVQWLPVNIFFVSMLSTGFLSLKHLNVPMVTVFKNLTNVGIMWGEWYFYGAHVSLGAILSCAIMILGALLAAANDITFSGIGYIWMVSNCCCTAGYVLYMKHATKTVRLPKFGMVFYNNLLSLPILLVGAAVRGEFRIFIGTEDLHTMSYLSLSIYAGLVGFFLNLATLWCVSNNSATTYAVVGALNKIPLAVLGWLMFKTPITHKALVFLSMSMCGGFLYTYTKLKEVDLRPTLPR 388
            MS KGIG       Y    G   DDE  +PL++EMRQ K     S+   ++     ++SSSS S++S +  +  AA   TS  +  S AI+SCFAYTFCSITMVL NKALASQY ADIDFLVIAFQS+CAV LV+ CD +G IQ GS KFD +VA+QWLPVN+FFVSMLSTGFLSL++LNVPMVT+FKNLTNVGIMWGEW  YGAHVSLGAIL+CAIMILGA+LAAANDITFSGIGY WM+SNC C AGYVLYMKHATKTVRLPKF MVFYNNLLSLPILL GAAVRGE+  F+ +EDLHT +Y+SLS+YAGLVGF LNLATLWCVSNNSATTY+VVGA+NKIPLAV+GWL+F+TPIT KAL+FLS+SMCGGFLYTYTKL+E +    LPR
Sbjct:    1 MSTKGIGTEDSAIGYFKFKGATRDDEAEDPLLIEMRQTKNLASHSNGTGTSFVADAATSSSSVSTTSSTPTSLNAAGAPTSSNESTSAAIISCFAYTFCSITMVLTNKALASQYDADIDFLVIAFQSLCAVLLVLSCDTLGFIQHGSAKFDPSVALQWLPVNLFFVSMLSTGFLSLRYLNVPMVTIFKNLTNVGIMWGEWSLYGAHVSLGAILACAIMILGAVLAAANDITFSGIGYFWMLSNCVCCAGYVLYMKHATKTVRLPKFAMVFYNNLLSLPILLAGAAVRGEYTTFLWSEDLHTAAYVSLSLYAGLVGFALNLATLWCVSNNSATTYSVVGAMNKIPLAVVGWLLFRTPITQKALIFLSLSMCGGFLYTYTKLREANQAAGLPR 391
The following BLAST results are available for this feature:
BLAST of NO02G01920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30446.14.400e-14571.10gdp-mannose transporter [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01920NO02G01920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01920.1NO02G01920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01920.1.cds1NO02G01920.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01920.1 ID=NO02G01920.1|Name=NO02G01920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2031bp
GTCGGCATGGTACTTGGCCTTGCATCCCTGGACAAATCCAGCCATCGTTC
CCATTACTACACAAACCATTCCAGCTGTGGAAAAAGGAATGAGTTGGGGA
CCGTGGCACCCCGGATTAAAAATCGCTTTCTTACAAGCTCCTTGCGGCGA
TGGCGATGATCGTCACGATGTGATCGTGCAGCCGTGCCTGAAGAGCTGAA
CACACCCCTATTCCACTCTTCCCTTCCCGCACTTTCATGATCATTTGCGC
CAATACATAAAGCGCAGCCACGTGAGGATGAGAAATCGTTGACACTGCTT
AGCCAGCGCTAGACCCTGCTTGCTGTTTTAGGTCACTCTTCTAGTGTAGT
CCTCTCCGCTCCATTTACCACCCGCCGTTTCTCTCACAGAACCCAACCCA
CACTATACACAGTACTCACAACAACAGTAATCACGACCACCCGGGGACGA
AGGACGATATTCATGTCCTTGAAGGGCATTGGGGGCAGGGGCGGAAACTT
CTATGAAGGTCGGGATGGCACCGTCGCCGACGATGAGGAAATTAATCCCC
TAATGGTGGAGATGCGCCAAGCCAAGGGTCGGCTTGAAGGCAGCTCATCT
TTGTCCTCGACCACTCCATCGTCATCCTCCTCATCTCGTTCCTCCTCTTC
TGGGTCAGTCGCCACGTCCTACGCCGCGACAACCGTGACGAGCCTAGGCG
ACCCGGCCTCGACCGCCATCATGTCATGCTTCGCCTACACCTTTTGCTCC
ATCACAATGGTCCTGGCCAACAAGGCCCTCGCCTCGCAATACAAAGCTGA
CATTGATTTTCTCGTTATTGCCTTTCAAAGCGTTTGTGCCGTCGCCCTCG
TGGTGGGCTGCGATGCGGTCGGAGTCATTCAACCGGGCAGCACCAAATTC
GATCGCGCCGTGGCTGTTCAATGGCTCCCTGTCAACATCTTCTTCGTCAG
CATGCTTTCCACGGGCTTTCTCAGTCTCAAACACCTCAATGTGCCCATGG
TCACCGTCTTTAAGAACCTGACCAACGTGGGCATCATGTGGGGGGAGTGG
TATTTCTACGGGGCACACGTCTCCCTCGGTGCCATCTTATCTTGTGCCAT
CATGATCTTAGGCGCCCTCCTCGCCGCTGCCAACGACATCACGTTCTCCG
GCATAGGTTATATTTGGATGGTCTCCAATTGCTGTTGCACTGCCGGGTAC
GTTTTGTACATGAAGCATGCCACTAAAACGGTGCGTCTGCCCAAATTTGG
TATGGTCTTCTACAACAACCTCTTGTCATTGCCGATCCTGTTGGTAGGAG
CGGCGGTCCGAGGGGAATTTAGGATTTTTATTGGGACAGAAGACTTACAC
ACGATGTCATATTTGAGCTTGTCGATATATGCAGGATTGGTAGGCTTTTT
CCTGAACTTGGCGACGTTATGGTGTGTGAGTAATAATTCAGCCACGACCT
ATGCAGTGGTGGGAGCACTGAACAAAATACCCTTGGCGGTGTTGGGATGG
CTAATGTTTAAAACACCCATAACGCACAAAGCGTTGGTGTTTTTGTCCAT
GAGCATGTGTGGGGGCTTTTTGTATACCTACACTAAATTGAAGGAGGTGG
ATCTGCGACCAACTTTGCCGAGATGAGGGGTAGGGAGGAAGGGCAGGGAA
AATGTGGACATATTATCAGTTGGATTTAAAATAGAATGGTAAATAAAGAG
CAGAAATGTACGACAGCTGTTTGAAAGGTAGGTAGGCACTGTGTCGAGTT
TTGAACGAATGCGCGACAGTCTCTTTCCTGGTTCACTTTCAGCAGCTGTA
GTAGAAGCAGCAGCAGTAATAAAATCTGTGGATTAGCGCTAATAGGAATA
AAAACATCAAACGAAAGATTTTCCCTGTTGGGTGAAAAGAGAGTCTTTTG
CTGTCGCTGCCTCTGCAGAATTTCATGATTGCAGAAGTCGGAAATAAGAA
GATGATCAGCGGATACGCGAAGGAACAAGTAAAAAGAGAAAGAGGAAGAC
GAAAGAAAATTGAGATGGCTGGTGATGATGA
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protein sequence of NO02G01920.1

>NO02G01920.1-protein ID=NO02G01920.1-protein|Name=NO02G01920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MSLKGIGGRGGNFYEGRDGTVADDEEINPLMVEMRQAKGRLEGSSSLSST
TPSSSSSSRSSSSGSVATSYAATTVTSLGDPASTAIMSCFAYTFCSITMV
LANKALASQYKADIDFLVIAFQSVCAVALVVGCDAVGVIQPGSTKFDRAV
AVQWLPVNIFFVSMLSTGFLSLKHLNVPMVTVFKNLTNVGIMWGEWYFYG
AHVSLGAILSCAIMILGALLAAANDITFSGIGYIWMVSNCCCTAGYVLYM
KHATKTVRLPKFGMVFYNNLLSLPILLVGAAVRGEFRIFIGTEDLHTMSY
LSLSIYAGLVGFFLNLATLWCVSNNSATTYAVVGALNKIPLAVLGWLMFK
TPITHKALVFLSMSMCGGFLYTYTKLKEVDLRPTLPR*
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mRNA from alignment at chr2:550423..552453+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01920.1 ID=NO02G01920.1|Name=NO02G01920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2031bp|location=Sequence derived from alignment at chr2:550423..552453+ (Nannochloropsis oceanica)
GTCGGCATGGTACTTGGCCTTGCATCCCTGGACAAATCCAGCCATCGTTC
CCATTACTACACAAACCATTCCAGCTGTGGAAAAAGGAATGAGTTGGGGA
CCGTGGCACCCCGGATTAAAAATCGCTTTCTTACAAGCTCCTTGCGGCGA
TGGCGATGATCGTCACGATGTGATCGTGCAGCCGTGCCTGAAGAGCTGAA
CACACCCCTATTCCACTCTTCCCTTCCCGCACTTTCATGATCATTTGCGC
CAATACATAAAGCGCAGCCACGTGAGGATGAGAAATCGTTGACACTGCTT
AGCCAGCGCTAGACCCTGCTTGCTGTTTTAGGTCACTCTTCTAGTGTAGT
CCTCTCCGCTCCATTTACCACCCGCCGTTTCTCTCACAGAACCCAACCCA
CACTATACACAGTACTCACAACAACAGTAATCACGACCACCCGGGGACGA
AGGACGATATTCATGTCCTTGAAGGGCATTGGGGGCAGGGGCGGAAACTT
CTATGAAGGTCGGGATGGCACCGTCGCCGACGATGAGGAAATTAATCCCC
TAATGGTGGAGATGCGCCAAGCCAAGGGTCGGCTTGAAGGCAGCTCATCT
TTGTCCTCGACCACTCCATCGTCATCCTCCTCATCTCGTTCCTCCTCTTC
TGGGTCAGTCGCCACGTCCTACGCCGCGACAACCGTGACGAGCCTAGGCG
ACCCGGCCTCGACCGCCATCATGTCATGCTTCGCCTACACCTTTTGCTCC
ATCACAATGGTCCTGGCCAACAAGGCCCTCGCCTCGCAATACAAAGCTGA
CATTGATTTTCTCGTTATTGCCTTTCAAAGCGTTTGTGCCGTCGCCCTCG
TGGTGGGCTGCGATGCGGTCGGAGTCATTCAACCGGGCAGCACCAAATTC
GATCGCGCCGTGGCTGTTCAATGGCTCCCTGTCAACATCTTCTTCGTCAG
CATGCTTTCCACGGGCTTTCTCAGTCTCAAACACCTCAATGTGCCCATGG
TCACCGTCTTTAAGAACCTGACCAACGTGGGCATCATGTGGGGGGAGTGG
TATTTCTACGGGGCACACGTCTCCCTCGGTGCCATCTTATCTTGTGCCAT
CATGATCTTAGGCGCCCTCCTCGCCGCTGCCAACGACATCACGTTCTCCG
GCATAGGTTATATTTGGATGGTCTCCAATTGCTGTTGCACTGCCGGGTAC
GTTTTGTACATGAAGCATGCCACTAAAACGGTGCGTCTGCCCAAATTTGG
TATGGTCTTCTACAACAACCTCTTGTCATTGCCGATCCTGTTGGTAGGAG
CGGCGGTCCGAGGGGAATTTAGGATTTTTATTGGGACAGAAGACTTACAC
ACGATGTCATATTTGAGCTTGTCGATATATGCAGGATTGGTAGGCTTTTT
CCTGAACTTGGCGACGTTATGGTGTGTGAGTAATAATTCAGCCACGACCT
ATGCAGTGGTGGGAGCACTGAACAAAATACCCTTGGCGGTGTTGGGATGG
CTAATGTTTAAAACACCCATAACGCACAAAGCGTTGGTGTTTTTGTCCAT
GAGCATGTGTGGGGGCTTTTTGTATACCTACACTAAATTGAAGGAGGTGG
ATCTGCGACCAACTTTGCCGAGATGAGGGGTAGGGAGGAAGGGCAGGGAA
AATGTGGACATATTATCAGTTGGATTTAAAATAGAATGGTAAATAAAGAG
CAGAAATGTACGACAGCTGTTTGAAAGGTAGGTAGGCACTGTGTCGAGTT
TTGAACGAATGCGCGACAGTCTCTTTCCTGGTTCACTTTCAGCAGCTGTA
GTAGAAGCAGCAGCAGTAATAAAATCTGTGGATTAGCGCTAATAGGAATA
AAAACATCAAACGAAAGATTTTCCCTGTTGGGTGAAAAGAGAGTCTTTTG
CTGTCGCTGCCTCTGCAGAATTTCATGATTGCAGAAGTCGGAAATAAGAA
GATGATCAGCGGATACGCGAAGGAACAAGTAAAAAGAGAAAGAGGAAGAC
GAAAGAAAATTGAGATGGCTGGTGATGATGA
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Coding sequence (CDS) from alignment at chr2:550423..552453+

>NO02G01920.1 ID=NO02G01920.1|Name=NO02G01920.1|organism=Nannochloropsis oceanica|type=CDS|length=1164bp|location=Sequence derived from alignment at chr2:550423..552453+ (Nannochloropsis oceanica)
ATGTCCTTGAAGGGCATTGGGGGCAGGGGCGGAAACTTCTATGAAGGTCG
GGATGGCACCGTCGCCGACGATGAGGAAATTAATCCCCTAATGGTGGAGA
TGCGCCAAGCCAAGGGTCGGCTTGAAGGCAGCTCATCTTTGTCCTCGACC
ACTCCATCGTCATCCTCCTCATCTCGTTCCTCCTCTTCTGGGTCAGTCGC
CACGTCCTACGCCGCGACAACCGTGACGAGCCTAGGCGACCCGGCCTCGA
CCGCCATCATGTCATGCTTCGCCTACACCTTTTGCTCCATCACAATGGTC
CTGGCCAACAAGGCCCTCGCCTCGCAATACAAAGCTGACATTGATTTTCT
CGTTATTGCCTTTCAAAGCGTTTGTGCCGTCGCCCTCGTGGTGGGCTGCG
ATGCGGTCGGAGTCATTCAACCGGGCAGCACCAAATTCGATCGCGCCGTG
GCTGTTCAATGGCTCCCTGTCAACATCTTCTTCGTCAGCATGCTTTCCAC
GGGCTTTCTCAGTCTCAAACACCTCAATGTGCCCATGGTCACCGTCTTTA
AGAACCTGACCAACGTGGGCATCATGTGGGGGGAGTGGTATTTCTACGGG
GCACACGTCTCCCTCGGTGCCATCTTATCTTGTGCCATCATGATCTTAGG
CGCCCTCCTCGCCGCTGCCAACGACATCACGTTCTCCGGCATAGGTTATA
TTTGGATGGTCTCCAATTGCTGTTGCACTGCCGGGTACGTTTTGTACATG
AAGCATGCCACTAAAACGGTGCGTCTGCCCAAATTTGGTATGGTCTTCTA
CAACAACCTCTTGTCATTGCCGATCCTGTTGGTAGGAGCGGCGGTCCGAG
GGGAATTTAGGATTTTTATTGGGACAGAAGACTTACACACGATGTCATAT
TTGAGCTTGTCGATATATGCAGGATTGGTAGGCTTTTTCCTGAACTTGGC
GACGTTATGGTGTGTGAGTAATAATTCAGCCACGACCTATGCAGTGGTGG
GAGCACTGAACAAAATACCCTTGGCGGTGTTGGGATGGCTAATGTTTAAA
ACACCCATAACGCACAAAGCGTTGGTGTTTTTGTCCATGAGCATGTGTGG
GGGCTTTTTGTATACCTACACTAAATTGAAGGAGGTGGATCTGCGACCAA
CTTTGCCGAGATGA
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Synonyms
Publications