NO02G01200.1, NO02G01200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01200.1
Unique NameNO02G01200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3193
Alignment locationchr2:367602..370957 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:367602..370957 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G01200.1 vs.
Match: EWM30490.1 (hypothetical protein Naga_100013g86 [Nannochloropsis gaditana])

HSP 1 Score: 520.4 bits (1339), Expect = 5.600e-144
Identity = 283/452 (62.61%), Postives = 332/452 (73.45%), Query Frame = 0
Query:    4 LMALLLLSSATAFL-------------VKPRPSLSSGTACINRRRPLATLATAAVPTSTSPAHSPVPSTLTILDGDRHLLSTRKQTLLELGTAGLEDVLRGKGRARMVWRAVREGLDPYQTDPDASLYDGRITRKTRNLLQERVQVPHWTVAETTRSPCGTVKLLIRLRDGLLVESVVIPSA--------EKTVNGKASAS-TVASRSTVCVSSQVGCAQACAFCLTGMMGFIRHLKADEILMQLQLALQVARKDGLPDVRNVVFMGMGEPLNNPHAVSQALQAMTDAHGFALSPNFVTVSTVAPSPAHIRRFLGMPKAKIAWSVHGATDVMRRALVPTTSATMVELREAFREVMAQRGDTDIFIECTLIDGVNDALADAEALVDFLRPFGRESVKVNLIPYNDTGVNGWKPSKWDTILNFQAYVRTQGGWPTFVRTPRGREESSACGQLAT 434
            L  ++LLSS+TAF              V  RP L +  A ++      TL  A++P ST P    +P               +K+T+L+LGT GLE VL GKGRARMVWRAVREGLDP++TDP + ++D RIT +TR +LQERV  P WT+ + T S CGT+KLL+RL DGL+VE+VVIP+          + ++G+A  S  +ASRSTVCVSSQVGCAQACAFCLTG MGF+RHL  DEILMQ+QLALQ  R +GLP +RNVVFMGMGEPLNN  AV  AL  MTD H FALSP+F+T+STVAPSP H+R FL MPK ++AWSVHGA D +RR LVPTTS++MVELREAFREVMAQRGDT IFIE TLI+GVND+L DAEALV+ LRPFGR +VKVNLIPYNDTGVNGW PS    IL FQ YVRT GGW TF RTPRGREESSACGQLAT
Sbjct:   69 LSTVVLLSSSTAFTTAFVMKSVPPKTSVDLRPGLPT-CAMVSSIAAENTLVKASMPLSTGP----IP---------------QKETILKLGTDGLERVLEGKGRARMVWRAVREGLDPHETDPASPMFDSRITSRTRAILQERVLGPQWTLVQRTSSTCGTLKLLVRLHDGLMVETVVIPARLGPRSNGLARGMSGEAEDSLALASRSTVCVSSQVGCAQACAFCLTGTMGFVRHLSIDEILMQVQLALQKVRAEGLPGLRNVVFMGMGEPLNNHRAVRHALACMTDPHAFALSPSFITLSTVAPSPGHVRHFLDMPKIRLAWSVHGAADGLRRTLVPTTSSSMVELREAFREVMAQRGDTYIFIEVTLIEGVNDSLDDAEALVELLRPFGRTAVKVNLIPYNDTGVNGWMPSPPGNILAFQTYVRTHGGWLTFARTPRGREESSACGQLAT 500          
The following BLAST results are available for this feature:
BLAST of NO02G01200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30490.15.600e-14462.61hypothetical protein Naga_100013g86 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01200NO02G01200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01200.1NO02G01200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01200.1.cds1NO02G01200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01200.1.cds2NO02G01200.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01200.1 ID=NO02G01200.1|Name=NO02G01200.1|organism=Nannochloropsis oceanica|type=mRNA|length=3193bp
CACCTCCAGTGGTAGTAGGATAAGTGAAAGCCCTTGTCGTTTCGAAAACA
TGTCTTTCTTTCAGTCTTTCTGGTGAGAGTGCCTAGCAGCTTTGCTGTCT
GTCCATGGATGTAGCCAGCAAACGCAACCTTTCTCCCCTTCCTCCATCCC
CGCTCCCTCCCTCCCTTCTCCAAGTTATATATCTCACAGCCTCTGTTTTC
TCATATTCATGACTTCTAGCCTGCTTTTCCCGCCTTCTCCTCCTCGTTCT
CCTTCTCCCCTCCAACAACCTCGGTGACGAAGTTGTTGTTTGTGTAGACA
CAGATATCGGCGGCAATGGACATGGCTTTGTGTGCGATTTGCTCAGCGTC
CATGTCGTCCCGGTCCAGTAACGCTTTGGCCGCAGCTGTTGTAAATGAGT
TGGTGTATAGGCGTTTCAACATGGTTGGAGTGATGCTGAAACCAAAAAAA
CAATTGCCGCGCGAATGACGGGACAAGAGACAGGTATAATATTGACCAGC
AATGATGGAGAGTGAGGGAAAGACTTTGGCTGTGTAAGTCTATGGTTGAG
AAAGTATACAAGCATCCTAAAGGGGGAAAATGATATCTTCATGTGAATGA
ACCGGGTAAAACGCTCTTCTTCGCGTGGCTTGTCTTCCACAAGTCAGAGT
ACCTCACCACTCCTCTCCTCCTCTCCACATCTCTATACCACTTCCTCTCC
AAAGAAAAGCATCATCCCACCTACAACCACTTACCTAATGCAAATGTACC
CCCGGAACCAATGGCAATTATCCCATCCTTGGGCTCCAACACGTCACCCA
GTCCCGTAATCTCAAACGACACGTTCTTATCCGCCACCAACAATGACGCC
TCCAACCGCCGCAAGTACTTGTCTGTCCGCCAGGCTTTCGCTAAATCTAC
GCATGCCCGTGTTAACTGACCTGGATGCTCCTCCAGTTTCCGCTCCAGAC
GCTCCATCAGCGTGAAGCAGTCAGCGGTCGAGCCAGCAAAACCAGCAATT
ATGTCCTCTCCAATCCGCCGCACCTTTTTCGCATTCGGCTTCACCACCGT
GGACCCTTGTGATACTTGCCCGTCACCCATCATGACCACCTTGTCGCCCT
TGCGTACACAGAGGATGGTGGTGGCGTGCATCGTCAAGTGGCCTGCATGG
TCCCCGCCGTAAAACCCATAACGCGGGTGTAGGGCGGCGGGTTTAGAAGA
CACCCACCTCTTGGTGCCGCTGTAAGCGTTGCTGCTGCTGGCCAGGGAGC
TGCTGATGCTTGGTATCGAAGCCAAGGGCGACAGCATGGCAGCCACCGGC
GGCTTGGTGGCAGTGCGGACGATGTGGGTCAGCATAGCTTCTTTAGGCGT
GTCTGTGTTGAGTGTGAGTGGGTGTTTAAGGGGGCGGAGGAAAAATGATA
AGAGACAGGTCAAAGGACGGCTGACAGGGAAATAAGTAGACGGGGCGACA
GAAGCAAGAGTGGCATGTATTTTGGGTCGACAATGATGGCTGTGTACGTG
AGCACTATATGCACATATTGTGCTTGATCACCTGACTCCGGCTCGCCACC
TATCGACGTGCTACATCTTTTCTCGTTACGATAAATGCAGATGTAGATAT
TGATGGACGCCTTCCCCACACGCCTCGACATAGGCAGCGTAGTGTGACCT
TGTCCTCCACGGCACAGGCGCGGTAGTTTAGCGCTCAGGAGGTCACAAGA
GACGAAAAATCAGCATCATCATCGAGGGACCGGAGCAACATGGGCAAGCT
CATGGCGCTCTTGCTGCTCTCTTCCGCCACGGCCTTCCTCGTGAAGCCTC
GTCCCTCTCTTTCCTCTGGCACTGCTTGTATCAATAGGAGGCGCCCTCTT
GCCACGCTCGCAACTGCTGCCGTCCCCACCAGCACCAGCCCTGCGCACTC
GCCTGTGCCCTCGACTCTCACCATCCTCGACGGCGACCGCCATCTCCTAT
CAACCAGAAAGCAGACCCTCTTAGAGCTCGGTACGGCGGGTTTGGAGGAT
GTTTTGCGAGGTAAGGGGAGGGCCCGCATGGTCTGGCGCGCCGTCCGGGA
AGGCCTCGATCCATATCAAACCGACCCCGACGCTTCGCTCTACGACGGAC
GAATTACGAGAAAAACTCGGAATTTGCTGCAAGAACGTGTCCAAGTCCCG
CATTGGACCGTAGCGGAGACGACACGTAGCCCCTGTGGTACGGTCAAGCT
TTTGATTCGATTGCGTGATGGGCTTTTGGTAGAGAGCGTGGTAATCCCTA
GCGCTGAGAAAACTGTCAATGGCAAAGCCTCTGCATCTACTGTGGCGTCT
CGTTCCACGGTCTGTGTTTCCTCGCAGGTGGGCTGTGCGCAGGCATGTGC
GTTTTGTTTGACGGGGATGATGGGATTCATTCGGCATCTAAAAGCTGACG
AAATCTTGATGCAGCTTCAGTTAGCGTTGCAGGTGGCGAGGAAGGACGGG
TTACCCGACGTGCGAAACGTGGTTTTTATGGGTATGGGCGAGCCTCTCAA
CAACCCCCACGCCGTCTCCCAGGCACTCCAAGCCATGACAGACGCCCATG
GCTTCGCTCTCTCTCCCAACTTTGTCACCGTCTCTACCGTCGCTCCTTCT
CCCGCCCACATCCGGCGTTTCCTAGGCATGCCTAAGGCCAAAATCGCCTG
GTCTGTCCACGGAGCAACAGACGTCATGAGGCGGGCCTTGGTCCCTACTA
CTAGTGCAACGATGGTCGAGTTGCGGGAGGCTTTTAGGGAGGTGATGGCC
CAGAGGGGAGATACAGACATTTTTATCGAATGTACGTTAATTGACGGTGT
AAATGATGCGTTGGCCGACGCGGAGGCGTTGGTGGATTTCCTACGGCCAT
TTGGGAGAGAGAGTGTGAAAGTAAATCTCATCCCGTACAATGATACGGGG
GTGAATGGATGGAAACCCTCGAAATGGGACACTATTTTGAATTTTCAAGC
TTACGTGCGGACTCAGGGCGGATGGCCAACCTTTGTAAGGACGCCACGGG
GAAGGGAGGAATCGAGCGCCTGTGGCCAGTTGGCAACTGAGATAGCGGCG
CGAGGTACTGATGGTGGAAATGGGGGCTAGAAGATGCGAAAGAGTAAAAG
TAAAAGGCACGAGGAAGTCGTATAATCGAGCAGGAGCAGGGCAGCGCTTG
TAAATCTGTACAAAAAGAAATAAAAGTAACGACCAATTAGAGA
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protein sequence of NO02G01200.1

>NO02G01200.1-protein ID=NO02G01200.1-protein|Name=NO02G01200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp
MGKLMALLLLSSATAFLVKPRPSLSSGTACINRRRPLATLATAAVPTSTS
PAHSPVPSTLTILDGDRHLLSTRKQTLLELGTAGLEDVLRGKGRARMVWR
AVREGLDPYQTDPDASLYDGRITRKTRNLLQERVQVPHWTVAETTRSPCG
TVKLLIRLRDGLLVESVVIPSAEKTVNGKASASTVASRSTVCVSSQVGCA
QACAFCLTGMMGFIRHLKADEILMQLQLALQVARKDGLPDVRNVVFMGMG
EPLNNPHAVSQALQAMTDAHGFALSPNFVTVSTVAPSPAHIRRFLGMPKA
KIAWSVHGATDVMRRALVPTTSATMVELREAFREVMAQRGDTDIFIECTL
IDGVNDALADAEALVDFLRPFGRESVKVNLIPYNDTGVNGWKPSKWDTIL
NFQAYVRTQGGWPTFVRTPRGREESSACGQLATEIAARGTDGGNGG*
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mRNA from alignment at chr2:367602..370957-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01200.1 ID=NO02G01200.1|Name=NO02G01200.1|organism=Nannochloropsis oceanica|type=mRNA|length=3356bp|location=Sequence derived from alignment at chr2:367602..370957- (Nannochloropsis oceanica)
CACCTCCAGTGGTAGTAGGATAAGTGAAAGCCCTTGTCGTTTCGAAAACA TGTCTTTCTTTCAGTCTTTCTGGTGAGAGTGCCTAGCAGCTTTGCTGTCT GTCCATGGATGTAGCCAGCAAACGCAACCTTTCTCCCCTTCCTCCATCCC CGCTCCCTCCCTCCCTTCTCCAAGTTATATATCTCACAGCCTCTGTTTTC TCATATTCATGACTTCTAGCCTGCTTTTCCCGCCTTCTCCTCCTCGTTCT CCTTCTCCCCTCCAACAACCTCGGTGACGAAGTTGTTGTTTGTGTAGACA CAGATATCGGCGGCAATGGACATGGCTTTGTGTGCGATTTGCTCAGCGTC CATGTCGTCCCGGTCCAGTAACGCTTTGGCCGCAGCTGTTGTAAATGAGT TGGTGTATAGGCGTTTCAACATGGTTGGAGTGATGCTGAAACCAAAAAAA CAATTGCCGCGCGAATGACGGGACAAGAGACAGGTATAATATTGACCAGC AATGATGGAGAGTGAGGGAAAGACTTTGGCTGTGTAAGTCTATGGTTGAG AAAGTATACAAGCATCCTAAAGGGGGAAAATGATATCTTCATGTGAATGA ACCGGGTAAAACGCTCTTCTTCGCGTGGCTTGTCTTCCACAAGTCAGAGT ACCTCACCACTCCTCTCCTCCTCTCCACATCTCTATACCACTTCCTCTCC AAAGAAAAGCATCATCCCACCTACAACCACTTACCTAATGCAAATGTACC CCCGGAACCAATGGCAATTATCCCATCCTTGGGCTCCAACACGTCACCCA GTCCCGTAATCTCAAACGACACGTTCTTATCCGCCACCAACAATGACGCC TCCAACCGCCGCAAGTACTTGTCTGTCCGCCAGGCTTTCGCTAAATCTAC GCATGCCCGTGTTAACTGACCTGGATGCTCCTCCAGTTTCCGCTCCAGAC GCTCCATCAGCGTGAAGCAGTCAGCGGTCGAGCCAGCAAAACCAGCAATT ATGTCCTCTCCAATCCGCCGCACCTTTTTCGCATTCGGCTTCACCACCGT GGACCCTTGTGATACTTGCCCGTCACCCATCATGACCACCTTGTCGCCCT TGCGTACACAGAGGATGGTGGTGGCGTGCATCGTCAAGTGGCCTGCATGG TCCCCGCCGTAAAACCCATAACGCGGGTGTAGGGCGGCGGGTTTAGAAGA CACCCACCTCTTGGTGCCGCTGTAAGCGTTGCTGCTGCTGGCCAGGGAGC TGCTGATGCTTGGTATCGAAGCCAAGGGCGACAGCATGGCAGCCACCGGC GGCTTGGTGGCAGTGCGGACGATGTGGGTCAGCATAGCTTCTTTAGGCGT GTCTGTGTTGAGTGTGAGTGGGTGTTTAAGGGGGCGGAGGAAAAATGATA AGAGACAGGTCAAAGGACGGCTGACAGGGAAATAAGTAGACGGGGCGACA GAAGCAAGAGTGGCATGTATTTTGGGTCGACAATGATGGCTGTGTACGTG AGCACTATATGCACATATTGTGCTTGATCACCTGACTCCGGCTCGCCACC TATCGACGTGCTACATCTTTTCTCGTTACGATAAATGCAGATGTAGATAT TGATGGACGCCTTCCCCACACGCCTCGACATAGGCAGCGTAGTGTGACCT TGTCCTCCACGGCACAGGCGCGGTAGTTTAGCGCTCAGGAGGTCACAAGA GACGAAAAATCAGCATCATCATCGAGGGACCGGAGCAACATGGGCAAGCT CATGGCGCTCTTGCTGCTCTCTTCCGCCACGGCCTTCCTCGTGAAGCCTC GTCCCTCTCTTTCCTCTGGCACTGCTTGTATCAATAGGAGGCGCCCTCTT GCCACGCTCGCAACTGCTGCCGTCCCCACCAGCACCAGCCCTGCGCACTC GCCTGTGCCCTCGACTCTCACCATCCTCGACGGCGACCGCCATCTCCTAT CAACCAGAAAGCAGACCCTCTTAGAGCTCGGTACGGCGGGTTTGGAGGAT GTTTTGCGAGGTAAGGGGAGGGCCCGCATGGTCTGGCGCGCCGTCCGGGA AGGCCTCGATCCATATCAAACCGACCCCGACGCTTCGCTCTACGACGGAC GAATTACGAGAAAAACTCGGAATTTGCTGCAAGAACGTGTCCAAGTCCCG CATTGGACCGTAGCGGAGACGACACGTAGCCCCTGTGGTACGGTCAAGCT TTTGATTCGATTGCGTGATGGGCTTTTGGTAGAGAGCGTGGTAATCCCTA GCGCTGAGAAAACTGTCAATGGCAAAGCCTCTGCATCTACTGTGGCGTCT CGTTCCACGGTCTGTGTTTCCTCGCAGGTGGGCTGTGCGCAGGCATGTGC GTTTTGTTTGACGGGGATGATGGGATTCATTCGGCATCTAAAAGCTGACG AAATCTTGATGCAGCTTCAGTTAGCGTTGCAGGTGGCGAGGAAGGACGGG TTACCCGACGTGCGAAACGTGGTTTTTATGGTGAGTGGTGCTATTTAAAT ACCAGGCGGTCTAAGTTGATAAAAATCTCTTCGGGTGCGGGATGTTTTGT TTACATCATCCGATCCCCATTTTGCGCTCAGGCCACCACTTATTTCTCTC CCACCTCCTTTTCCACTGACACATCTGAAAACACAACAAATAGGGTATGG GCGAGCCTCTCAACAACCCCCACGCCGTCTCCCAGGCACTCCAAGCCATG ACAGACGCCCATGGCTTCGCTCTCTCTCCCAACTTTGTCACCGTCTCTAC CGTCGCTCCTTCTCCCGCCCACATCCGGCGTTTCCTAGGCATGCCTAAGG CCAAAATCGCCTGGTCTGTCCACGGAGCAACAGACGTCATGAGGCGGGCC TTGGTCCCTACTACTAGTGCAACGATGGTCGAGTTGCGGGAGGCTTTTAG GGAGGTGATGGCCCAGAGGGGAGATACAGACATTTTTATCGAATGTACGT TAATTGACGGTGTAAATGATGCGTTGGCCGACGCGGAGGCGTTGGTGGAT TTCCTACGGCCATTTGGGAGAGAGAGTGTGAAAGTAAATCTCATCCCGTA CAATGATACGGGGGTGAATGGATGGAAACCCTCGAAATGGGACACTATTT TGAATTTTCAAGCTTACGTGCGGACTCAGGGCGGATGGCCAACCTTTGTA AGGACGCCACGGGGAAGGGAGGAATCGAGCGCCTGTGGCCAGTTGGCAAC TGAGATAGCGGCGCGAGGTACTGATGGTGGAAATGGGGGCTAGAAGATGC GAAAGAGTAAAAGTAAAAGGCACGAGGAAGTCGTATAATCGAGCAGGAGC AGGGCAGCGCTTGTAAATCTGTACAAAAAGAAATAAAAGTAACGACCAAT TAGAGA
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Coding sequence (CDS) from alignment at chr2:367602..370957-

>NO02G01200.1 ID=NO02G01200.1|Name=NO02G01200.1|organism=Nannochloropsis oceanica|type=CDS|length=1341bp|location=Sequence derived from alignment at chr2:367602..370957- (Nannochloropsis oceanica)
ATGGGCAAGCTCATGGCGCTCTTGCTGCTCTCTTCCGCCACGGCCTTCCT
CGTGAAGCCTCGTCCCTCTCTTTCCTCTGGCACTGCTTGTATCAATAGGA
GGCGCCCTCTTGCCACGCTCGCAACTGCTGCCGTCCCCACCAGCACCAGC
CCTGCGCACTCGCCTGTGCCCTCGACTCTCACCATCCTCGACGGCGACCG
CCATCTCCTATCAACCAGAAAGCAGACCCTCTTAGAGCTCGGTACGGCGG
GTTTGGAGGATGTTTTGCGAGGTAAGGGGAGGGCCCGCATGGTCTGGCGC
GCCGTCCGGGAAGGCCTCGATCCATATCAAACCGACCCCGACGCTTCGCT
CTACGACGGACGAATTACGAGAAAAACTCGGAATTTGCTGCAAGAACGTG
TCCAAGTCCCGCATTGGACCGTAGCGGAGACGACACGTAGCCCCTGTGGT
ACGGTCAAGCTTTTGATTCGATTGCGTGATGGGCTTTTGGTAGAGAGCGT
GGTAATCCCTAGCGCTGAGAAAACTGTCAATGGCAAAGCCTCTGCATCTA
CTGTGGCGTCTCGTTCCACGGTCTGTGTTTCCTCGCAGGTGGGCTGTGCG
CAGGCATGTGCGTTTTGTTTGACGGGGATGATGGGATTCATTCGGCATCT
AAAAGCTGACGAAATCTTGATGCAGCTTCAGTTAGCGTTGCAGGTGGCGA
GGAAGGACGGGTTACCCGACGTGCGAAACGTGGTTTTTATGGGTATGGGC
GAGCCTCTCAACAACCCCCACGCCGTCTCCCAGGCACTCCAAGCCATGAC
AGACGCCCATGGCTTCGCTCTCTCTCCCAACTTTGTCACCGTCTCTACCG
TCGCTCCTTCTCCCGCCCACATCCGGCGTTTCCTAGGCATGCCTAAGGCC
AAAATCGCCTGGTCTGTCCACGGAGCAACAGACGTCATGAGGCGGGCCTT
GGTCCCTACTACTAGTGCAACGATGGTCGAGTTGCGGGAGGCTTTTAGGG
AGGTGATGGCCCAGAGGGGAGATACAGACATTTTTATCGAATGTACGTTA
ATTGACGGTGTAAATGATGCGTTGGCCGACGCGGAGGCGTTGGTGGATTT
CCTACGGCCATTTGGGAGAGAGAGTGTGAAAGTAAATCTCATCCCGTACA
ATGATACGGGGGTGAATGGATGGAAACCCTCGAAATGGGACACTATTTTG
AATTTTCAAGCTTACGTGCGGACTCAGGGCGGATGGCCAACCTTTGTAAG
GACGCCACGGGGAAGGGAGGAATCGAGCGCCTGTGGCCAGTTGGCAACTG
AGATAGCGGCGCGAGGTACTGATGGTGGAAATGGGGGCTAG
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Synonyms
Publications