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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:367602..370957 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G01200.1 vs.
Match: EWM30490.1 (hypothetical protein Naga_100013g86 [Nannochloropsis gaditana]) HSP 1 Score: 520.4 bits (1339), Expect = 5.600e-144 Identity = 283/452 (62.61%), Postives = 332/452 (73.45%), Query Frame = 0
Query: 4 LMALLLLSSATAFL-------------VKPRPSLSSGTACINRRRPLATLATAAVPTSTSPAHSPVPSTLTILDGDRHLLSTRKQTLLELGTAGLEDVLRGKGRARMVWRAVREGLDPYQTDPDASLYDGRITRKTRNLLQERVQVPHWTVAETTRSPCGTVKLLIRLRDGLLVESVVIPSA--------EKTVNGKASAS-TVASRSTVCVSSQVGCAQACAFCLTGMMGFIRHLKADEILMQLQLALQVARKDGLPDVRNVVFMGMGEPLNNPHAVSQALQAMTDAHGFALSPNFVTVSTVAPSPAHIRRFLGMPKAKIAWSVHGATDVMRRALVPTTSATMVELREAFREVMAQRGDTDIFIECTLIDGVNDALADAEALVDFLRPFGRESVKVNLIPYNDTGVNGWKPSKWDTILNFQAYVRTQGGWPTFVRTPRGREESSACGQLAT 434
L ++LLSS+TAF V RP L + A ++ TL A++P ST P +P +K+T+L+LGT GLE VL GKGRARMVWRAVREGLDP++TDP + ++D RIT +TR +LQERV P WT+ + T S CGT+KLL+RL DGL+VE+VVIP+ + ++G+A S +ASRSTVCVSSQVGCAQACAFCLTG MGF+RHL DEILMQ+QLALQ R +GLP +RNVVFMGMGEPLNN AV AL MTD H FALSP+F+T+STVAPSP H+R FL MPK ++AWSVHGA D +RR LVPTTS++MVELREAFREVMAQRGDT IFIE TLI+GVND+L DAEALV+ LRPFGR +VKVNLIPYNDTGVNGW PS IL FQ YVRT GGW TF RTPRGREESSACGQLAT
Sbjct: 69 LSTVVLLSSSTAFTTAFVMKSVPPKTSVDLRPGLPT-CAMVSSIAAENTLVKASMPLSTGP----IP---------------QKETILKLGTDGLERVLEGKGRARMVWRAVREGLDPHETDPASPMFDSRITSRTRAILQERVLGPQWTLVQRTSSTCGTLKLLVRLHDGLMVETVVIPARLGPRSNGLARGMSGEAEDSLALASRSTVCVSSQVGCAQACAFCLTGTMGFVRHLSIDEILMQVQLALQKVRAEGLPGLRNVVFMGMGEPLNNHRAVRHALACMTDPHAFALSPSFITLSTVAPSPGHVRHFLDMPKIRLAWSVHGAADGLRRTLVPTTSSSMVELREAFREVMAQRGDTYIFIEVTLIEGVNDSLDDAEALVELLRPFGRTAVKVNLIPYNDTGVNGWMPSPPGNILAFQTYVRTHGGWLTFARTPRGREESSACGQLAT 500
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G01200.1 ID=NO02G01200.1|Name=NO02G01200.1|organism=Nannochloropsis oceanica|type=mRNA|length=3193bp CACCTCCAGTGGTAGTAGGATAAGTGAAAGCCCTTGTCGTTTCGAAAACA TGTCTTTCTTTCAGTCTTTCTGGTGAGAGTGCCTAGCAGCTTTGCTGTCT GTCCATGGATGTAGCCAGCAAACGCAACCTTTCTCCCCTTCCTCCATCCC CGCTCCCTCCCTCCCTTCTCCAAGTTATATATCTCACAGCCTCTGTTTTC TCATATTCATGACTTCTAGCCTGCTTTTCCCGCCTTCTCCTCCTCGTTCT CCTTCTCCCCTCCAACAACCTCGGTGACGAAGTTGTTGTTTGTGTAGACA CAGATATCGGCGGCAATGGACATGGCTTTGTGTGCGATTTGCTCAGCGTC CATGTCGTCCCGGTCCAGTAACGCTTTGGCCGCAGCTGTTGTAAATGAGT TGGTGTATAGGCGTTTCAACATGGTTGGAGTGATGCTGAAACCAAAAAAA CAATTGCCGCGCGAATGACGGGACAAGAGACAGGTATAATATTGACCAGC AATGATGGAGAGTGAGGGAAAGACTTTGGCTGTGTAAGTCTATGGTTGAG AAAGTATACAAGCATCCTAAAGGGGGAAAATGATATCTTCATGTGAATGA ACCGGGTAAAACGCTCTTCTTCGCGTGGCTTGTCTTCCACAAGTCAGAGT ACCTCACCACTCCTCTCCTCCTCTCCACATCTCTATACCACTTCCTCTCC AAAGAAAAGCATCATCCCACCTACAACCACTTACCTAATGCAAATGTACC CCCGGAACCAATGGCAATTATCCCATCCTTGGGCTCCAACACGTCACCCA GTCCCGTAATCTCAAACGACACGTTCTTATCCGCCACCAACAATGACGCC TCCAACCGCCGCAAGTACTTGTCTGTCCGCCAGGCTTTCGCTAAATCTAC GCATGCCCGTGTTAACTGACCTGGATGCTCCTCCAGTTTCCGCTCCAGAC GCTCCATCAGCGTGAAGCAGTCAGCGGTCGAGCCAGCAAAACCAGCAATT ATGTCCTCTCCAATCCGCCGCACCTTTTTCGCATTCGGCTTCACCACCGT GGACCCTTGTGATACTTGCCCGTCACCCATCATGACCACCTTGTCGCCCT TGCGTACACAGAGGATGGTGGTGGCGTGCATCGTCAAGTGGCCTGCATGG TCCCCGCCGTAAAACCCATAACGCGGGTGTAGGGCGGCGGGTTTAGAAGA CACCCACCTCTTGGTGCCGCTGTAAGCGTTGCTGCTGCTGGCCAGGGAGC TGCTGATGCTTGGTATCGAAGCCAAGGGCGACAGCATGGCAGCCACCGGC GGCTTGGTGGCAGTGCGGACGATGTGGGTCAGCATAGCTTCTTTAGGCGT GTCTGTGTTGAGTGTGAGTGGGTGTTTAAGGGGGCGGAGGAAAAATGATA AGAGACAGGTCAAAGGACGGCTGACAGGGAAATAAGTAGACGGGGCGACA GAAGCAAGAGTGGCATGTATTTTGGGTCGACAATGATGGCTGTGTACGTG AGCACTATATGCACATATTGTGCTTGATCACCTGACTCCGGCTCGCCACC TATCGACGTGCTACATCTTTTCTCGTTACGATAAATGCAGATGTAGATAT TGATGGACGCCTTCCCCACACGCCTCGACATAGGCAGCGTAGTGTGACCT TGTCCTCCACGGCACAGGCGCGGTAGTTTAGCGCTCAGGAGGTCACAAGA GACGAAAAATCAGCATCATCATCGAGGGACCGGAGCAACATGGGCAAGCT CATGGCGCTCTTGCTGCTCTCTTCCGCCACGGCCTTCCTCGTGAAGCCTC GTCCCTCTCTTTCCTCTGGCACTGCTTGTATCAATAGGAGGCGCCCTCTT GCCACGCTCGCAACTGCTGCCGTCCCCACCAGCACCAGCCCTGCGCACTC GCCTGTGCCCTCGACTCTCACCATCCTCGACGGCGACCGCCATCTCCTAT CAACCAGAAAGCAGACCCTCTTAGAGCTCGGTACGGCGGGTTTGGAGGAT GTTTTGCGAGGTAAGGGGAGGGCCCGCATGGTCTGGCGCGCCGTCCGGGA AGGCCTCGATCCATATCAAACCGACCCCGACGCTTCGCTCTACGACGGAC GAATTACGAGAAAAACTCGGAATTTGCTGCAAGAACGTGTCCAAGTCCCG CATTGGACCGTAGCGGAGACGACACGTAGCCCCTGTGGTACGGTCAAGCT TTTGATTCGATTGCGTGATGGGCTTTTGGTAGAGAGCGTGGTAATCCCTA GCGCTGAGAAAACTGTCAATGGCAAAGCCTCTGCATCTACTGTGGCGTCT CGTTCCACGGTCTGTGTTTCCTCGCAGGTGGGCTGTGCGCAGGCATGTGC GTTTTGTTTGACGGGGATGATGGGATTCATTCGGCATCTAAAAGCTGACG AAATCTTGATGCAGCTTCAGTTAGCGTTGCAGGTGGCGAGGAAGGACGGG TTACCCGACGTGCGAAACGTGGTTTTTATGGGTATGGGCGAGCCTCTCAA CAACCCCCACGCCGTCTCCCAGGCACTCCAAGCCATGACAGACGCCCATG GCTTCGCTCTCTCTCCCAACTTTGTCACCGTCTCTACCGTCGCTCCTTCT CCCGCCCACATCCGGCGTTTCCTAGGCATGCCTAAGGCCAAAATCGCCTG GTCTGTCCACGGAGCAACAGACGTCATGAGGCGGGCCTTGGTCCCTACTA CTAGTGCAACGATGGTCGAGTTGCGGGAGGCTTTTAGGGAGGTGATGGCC CAGAGGGGAGATACAGACATTTTTATCGAATGTACGTTAATTGACGGTGT AAATGATGCGTTGGCCGACGCGGAGGCGTTGGTGGATTTCCTACGGCCAT TTGGGAGAGAGAGTGTGAAAGTAAATCTCATCCCGTACAATGATACGGGG GTGAATGGATGGAAACCCTCGAAATGGGACACTATTTTGAATTTTCAAGC TTACGTGCGGACTCAGGGCGGATGGCCAACCTTTGTAAGGACGCCACGGG GAAGGGAGGAATCGAGCGCCTGTGGCCAGTTGGCAACTGAGATAGCGGCG CGAGGTACTGATGGTGGAAATGGGGGCTAGAAGATGCGAAAGAGTAAAAG TAAAAGGCACGAGGAAGTCGTATAATCGAGCAGGAGCAGGGCAGCGCTTG TAAATCTGTACAAAAAGAAATAAAAGTAACGACCAATTAGAGA back to topprotein sequence of NO02G01200.1 >NO02G01200.1-protein ID=NO02G01200.1-protein|Name=NO02G01200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp MGKLMALLLLSSATAFLVKPRPSLSSGTACINRRRPLATLATAAVPTSTS PAHSPVPSTLTILDGDRHLLSTRKQTLLELGTAGLEDVLRGKGRARMVWR AVREGLDPYQTDPDASLYDGRITRKTRNLLQERVQVPHWTVAETTRSPCG TVKLLIRLRDGLLVESVVIPSAEKTVNGKASASTVASRSTVCVSSQVGCA QACAFCLTGMMGFIRHLKADEILMQLQLALQVARKDGLPDVRNVVFMGMG EPLNNPHAVSQALQAMTDAHGFALSPNFVTVSTVAPSPAHIRRFLGMPKA KIAWSVHGATDVMRRALVPTTSATMVELREAFREVMAQRGDTDIFIECTL IDGVNDALADAEALVDFLRPFGRESVKVNLIPYNDTGVNGWKPSKWDTIL NFQAYVRTQGGWPTFVRTPRGREESSACGQLATEIAARGTDGGNGG* back to topmRNA from alignment at chr2:367602..370957- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G01200.1 ID=NO02G01200.1|Name=NO02G01200.1|organism=Nannochloropsis oceanica|type=mRNA|length=3356bp|location=Sequence derived from alignment at chr2:367602..370957- (Nannochloropsis oceanica) CACCTCCAGTGGTAGTAGGATAAGTGAAAGCCCTTGTCGTTTCGAAAACA
TGTCTTTCTTTCAGTCTTTCTGGTGAGAGTGCCTAGCAGCTTTGCTGTCT
GTCCATGGATGTAGCCAGCAAACGCAACCTTTCTCCCCTTCCTCCATCCC
CGCTCCCTCCCTCCCTTCTCCAAGTTATATATCTCACAGCCTCTGTTTTC
TCATATTCATGACTTCTAGCCTGCTTTTCCCGCCTTCTCCTCCTCGTTCT
CCTTCTCCCCTCCAACAACCTCGGTGACGAAGTTGTTGTTTGTGTAGACA
CAGATATCGGCGGCAATGGACATGGCTTTGTGTGCGATTTGCTCAGCGTC
CATGTCGTCCCGGTCCAGTAACGCTTTGGCCGCAGCTGTTGTAAATGAGT
TGGTGTATAGGCGTTTCAACATGGTTGGAGTGATGCTGAAACCAAAAAAA
CAATTGCCGCGCGAATGACGGGACAAGAGACAGGTATAATATTGACCAGC
AATGATGGAGAGTGAGGGAAAGACTTTGGCTGTGTAAGTCTATGGTTGAG
AAAGTATACAAGCATCCTAAAGGGGGAAAATGATATCTTCATGTGAATGA
ACCGGGTAAAACGCTCTTCTTCGCGTGGCTTGTCTTCCACAAGTCAGAGT
ACCTCACCACTCCTCTCCTCCTCTCCACATCTCTATACCACTTCCTCTCC
AAAGAAAAGCATCATCCCACCTACAACCACTTACCTAATGCAAATGTACC
CCCGGAACCAATGGCAATTATCCCATCCTTGGGCTCCAACACGTCACCCA
GTCCCGTAATCTCAAACGACACGTTCTTATCCGCCACCAACAATGACGCC
TCCAACCGCCGCAAGTACTTGTCTGTCCGCCAGGCTTTCGCTAAATCTAC
GCATGCCCGTGTTAACTGACCTGGATGCTCCTCCAGTTTCCGCTCCAGAC
GCTCCATCAGCGTGAAGCAGTCAGCGGTCGAGCCAGCAAAACCAGCAATT
ATGTCCTCTCCAATCCGCCGCACCTTTTTCGCATTCGGCTTCACCACCGT
GGACCCTTGTGATACTTGCCCGTCACCCATCATGACCACCTTGTCGCCCT
TGCGTACACAGAGGATGGTGGTGGCGTGCATCGTCAAGTGGCCTGCATGG
TCCCCGCCGTAAAACCCATAACGCGGGTGTAGGGCGGCGGGTTTAGAAGA
CACCCACCTCTTGGTGCCGCTGTAAGCGTTGCTGCTGCTGGCCAGGGAGC
TGCTGATGCTTGGTATCGAAGCCAAGGGCGACAGCATGGCAGCCACCGGC
GGCTTGGTGGCAGTGCGGACGATGTGGGTCAGCATAGCTTCTTTAGGCGT
GTCTGTGTTGAGTGTGAGTGGGTGTTTAAGGGGGCGGAGGAAAAATGATA
AGAGACAGGTCAAAGGACGGCTGACAGGGAAATAAGTAGACGGGGCGACA
GAAGCAAGAGTGGCATGTATTTTGGGTCGACAATGATGGCTGTGTACGTG
AGCACTATATGCACATATTGTGCTTGATCACCTGACTCCGGCTCGCCACC
TATCGACGTGCTACATCTTTTCTCGTTACGATAAATGCAGATGTAGATAT
TGATGGACGCCTTCCCCACACGCCTCGACATAGGCAGCGTAGTGTGACCT
TGTCCTCCACGGCACAGGCGCGGTAGTTTAGCGCTCAGGAGGTCACAAGA
GACGAAAAATCAGCATCATCATCGAGGGACCGGAGCAACATGGGCAAGCT
CATGGCGCTCTTGCTGCTCTCTTCCGCCACGGCCTTCCTCGTGAAGCCTC
GTCCCTCTCTTTCCTCTGGCACTGCTTGTATCAATAGGAGGCGCCCTCTT
GCCACGCTCGCAACTGCTGCCGTCCCCACCAGCACCAGCCCTGCGCACTC
GCCTGTGCCCTCGACTCTCACCATCCTCGACGGCGACCGCCATCTCCTAT
CAACCAGAAAGCAGACCCTCTTAGAGCTCGGTACGGCGGGTTTGGAGGAT
GTTTTGCGAGGTAAGGGGAGGGCCCGCATGGTCTGGCGCGCCGTCCGGGA
AGGCCTCGATCCATATCAAACCGACCCCGACGCTTCGCTCTACGACGGAC
GAATTACGAGAAAAACTCGGAATTTGCTGCAAGAACGTGTCCAAGTCCCG
CATTGGACCGTAGCGGAGACGACACGTAGCCCCTGTGGTACGGTCAAGCT
TTTGATTCGATTGCGTGATGGGCTTTTGGTAGAGAGCGTGGTAATCCCTA
GCGCTGAGAAAACTGTCAATGGCAAAGCCTCTGCATCTACTGTGGCGTCT
CGTTCCACGGTCTGTGTTTCCTCGCAGGTGGGCTGTGCGCAGGCATGTGC
GTTTTGTTTGACGGGGATGATGGGATTCATTCGGCATCTAAAAGCTGACG
AAATCTTGATGCAGCTTCAGTTAGCGTTGCAGGTGGCGAGGAAGGACGGG
TTACCCGACGTGCGAAACGTGGTTTTTATGGTGAGTGGTGCTATTTAAAT
ACCAGGCGGTCTAAGTTGATAAAAATCTCTTCGGGTGCGGGATGTTTTGT
TTACATCATCCGATCCCCATTTTGCGCTCAGGCCACCACTTATTTCTCTC
CCACCTCCTTTTCCACTGACACATCTGAAAACACAACAAATAGGGTATGG
GCGAGCCTCTCAACAACCCCCACGCCGTCTCCCAGGCACTCCAAGCCATG
ACAGACGCCCATGGCTTCGCTCTCTCTCCCAACTTTGTCACCGTCTCTAC
CGTCGCTCCTTCTCCCGCCCACATCCGGCGTTTCCTAGGCATGCCTAAGG
CCAAAATCGCCTGGTCTGTCCACGGAGCAACAGACGTCATGAGGCGGGCC
TTGGTCCCTACTACTAGTGCAACGATGGTCGAGTTGCGGGAGGCTTTTAG
GGAGGTGATGGCCCAGAGGGGAGATACAGACATTTTTATCGAATGTACGT
TAATTGACGGTGTAAATGATGCGTTGGCCGACGCGGAGGCGTTGGTGGAT
TTCCTACGGCCATTTGGGAGAGAGAGTGTGAAAGTAAATCTCATCCCGTA
CAATGATACGGGGGTGAATGGATGGAAACCCTCGAAATGGGACACTATTT
TGAATTTTCAAGCTTACGTGCGGACTCAGGGCGGATGGCCAACCTTTGTA
AGGACGCCACGGGGAAGGGAGGAATCGAGCGCCTGTGGCCAGTTGGCAAC
TGAGATAGCGGCGCGAGGTACTGATGGTGGAAATGGGGGCTAGAAGATGC
GAAAGAGTAAAAGTAAAAGGCACGAGGAAGTCGTATAATCGAGCAGGAGC
AGGGCAGCGCTTGTAAATCTGTACAAAAAGAAATAAAAGTAACGACCAAT
TAGAGA back to topCoding sequence (CDS) from alignment at chr2:367602..370957- >NO02G01200.1 ID=NO02G01200.1|Name=NO02G01200.1|organism=Nannochloropsis oceanica|type=CDS|length=1341bp|location=Sequence derived from alignment at chr2:367602..370957- (Nannochloropsis oceanica) ATGGGCAAGCTCATGGCGCTCTTGCTGCTCTCTTCCGCCACGGCCTTCCT CGTGAAGCCTCGTCCCTCTCTTTCCTCTGGCACTGCTTGTATCAATAGGA GGCGCCCTCTTGCCACGCTCGCAACTGCTGCCGTCCCCACCAGCACCAGC CCTGCGCACTCGCCTGTGCCCTCGACTCTCACCATCCTCGACGGCGACCG CCATCTCCTATCAACCAGAAAGCAGACCCTCTTAGAGCTCGGTACGGCGG GTTTGGAGGATGTTTTGCGAGGTAAGGGGAGGGCCCGCATGGTCTGGCGC GCCGTCCGGGAAGGCCTCGATCCATATCAAACCGACCCCGACGCTTCGCT CTACGACGGACGAATTACGAGAAAAACTCGGAATTTGCTGCAAGAACGTG TCCAAGTCCCGCATTGGACCGTAGCGGAGACGACACGTAGCCCCTGTGGT ACGGTCAAGCTTTTGATTCGATTGCGTGATGGGCTTTTGGTAGAGAGCGT GGTAATCCCTAGCGCTGAGAAAACTGTCAATGGCAAAGCCTCTGCATCTA CTGTGGCGTCTCGTTCCACGGTCTGTGTTTCCTCGCAGGTGGGCTGTGCG CAGGCATGTGCGTTTTGTTTGACGGGGATGATGGGATTCATTCGGCATCT AAAAGCTGACGAAATCTTGATGCAGCTTCAGTTAGCGTTGCAGGTGGCGA GGAAGGACGGGTTACCCGACGTGCGAAACGTGGTTTTTATGGGTATGGGC GAGCCTCTCAACAACCCCCACGCCGTCTCCCAGGCACTCCAAGCCATGAC AGACGCCCATGGCTTCGCTCTCTCTCCCAACTTTGTCACCGTCTCTACCG TCGCTCCTTCTCCCGCCCACATCCGGCGTTTCCTAGGCATGCCTAAGGCC AAAATCGCCTGGTCTGTCCACGGAGCAACAGACGTCATGAGGCGGGCCTT GGTCCCTACTACTAGTGCAACGATGGTCGAGTTGCGGGAGGCTTTTAGGG AGGTGATGGCCCAGAGGGGAGATACAGACATTTTTATCGAATGTACGTTA ATTGACGGTGTAAATGATGCGTTGGCCGACGCGGAGGCGTTGGTGGATTT CCTACGGCCATTTGGGAGAGAGAGTGTGAAAGTAAATCTCATCCCGTACA ATGATACGGGGGTGAATGGATGGAAACCCTCGAAATGGGACACTATTTTG AATTTTCAAGCTTACGTGCGGACTCAGGGCGGATGGCCAACCTTTGTAAG GACGCCACGGGGAAGGGAGGAATCGAGCGCCTGTGGCCAGTTGGCAACTG AGATAGCGGCGCGAGGTACTGATGGTGGAAATGGGGGCTAG back to top
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