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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr2 | genome | chr2:118198..121673 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G00340.1 vs.
Match: EWM30632.1 (wd-40 repeat protein [Nannochloropsis gaditana]) HSP 1 Score: 589.7 bits (1519), Expect = 1.000e-164 Identity = 309/416 (74.28%), Postives = 351/416 (84.38%), Query Frame = 0
Query: 196 LEAPSLILKYKWTAFGRPIYTGLLALSLLLALNYSLASALLLPLLHSNAPWRRTAGLVWQGLLLANAFPLVCQEYWQWHAQGFRAYFFSWFRLLDLLTLLLTFASILLRFFLVKGEGEKENIRTLYHMLSAIASWLLWAKLLVYLRGFKETGPLIRMIWQIVKDTRFFLVVLAVSVMGFSNCLYLLFQEDIQREDAMGTTSPIRSSYGSLFHTVLVLFAALNSNLDYLPFNASHFKVLVSLIYLFYCVCSTIILLNLLIALMGDSYDKVQENALAQGRYEQAVSVLEIEDMLPQRILQDPRFFPRWVQVLRPKPGADGGMVCDAGADRWGGRLRQIYKKIEHSEKRLSQDIEGLFNAVGRERKEGGG---VMEGGVGTRLARLEDNVEGLQGKLDQILAMLHSAVQDDDTSDEEDE 609
+EA LIL++KW+AFGRPIYTGLL+LSLLLA+NYSL++A LLPLL S WR+T G +WQ LL NA PL+ EYWQ+H QG R Y S+FRL DLLTL T+AS+ LRFFL + E +++RTLYH+LSA+ASWLLWAKL+VYLRGF ETGPLIRMI QIVKDTRFFLVVLAVSV+GFSNCLY+LFQEDI+REDA G SPIR+SYGSLFHT LVLFAALNSNLDY PFNAS+F+VL SLIYLFYCVC+TIILLNLLIALMGDSYDK+QENA AQGRYEQAVSVLEIE MLPQRILQDP FFPRWVQVLRPKPG DGG++ DAG D+W GRLRQIYKKIE SEKRLSQDIEG F+ G E KEG V + G+ R+ LEDNVEGLQ KLDQ+LA+L SAVQ+ DT+D+E E
Sbjct: 1 MEAVFLILQFKWSAFGRPIYTGLLSLSLLLAINYSLSTAYLLPLLRSRVSWRQTCGWIWQSFLLLNAAPLLACEYWQFHTQGARVYCSSFFRLFDLLTLSATYASLALRFFLREDE---QDLRTLYHLLSALASWLLWAKLIVYLRGFTETGPLIRMIAQIVKDTRFFLVVLAVSVVGFSNCLYMLFQEDIEREDAQGVDSPIRTSYGSLFHTALVLFAALNSNLDYQPFNASNFRVLASLIYLFYCVCNTIILLNLLIALMGDSYDKIQENAQAQGRYEQAVSVLEIEAMLPQRILQDPCFFPRWVQVLRPKPGTDGGLIQDAG-DQWSGRLRQIYKKIEQSEKRLSQDIEGYFDVAGAEGKEGAERKLVEKKGLAQRMTTLEDNVEGLQAKLDQVLALLQSAVQEVDTTDDEAE 412
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G00340.1 ID=NO02G00340.1|Name=NO02G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1984bp
AAGAAACTCAAGAACATGAAAGAAAGACGTAGTAAAAAATGGGCAGAGGG
AGGGAGGGGAGGAGGGAACACGAATAGCTGCTCGTGCATTCAAACATTTT
CATACTTTCCTCCTCCCACTTATACCTATTTATACATTGCACCTTCCTAT
GTATGCATGTATATGTACGTACTCATGTACGATAGAATACCCCTCCCTCC
TGGAAACGTCGGCGGTGCGGAGTTTTTTCAACTTGCAGCCCTCCTGTGCA
GGCGTCGTTGACTTGGAGGCGGAAGAATCCGATTACCGAGCGAACCTTGG
GCCGGGGGAGAGCAAGACCCTCGGGTCGGCAGAGGCATTCCCTCTCGGCT
TCTGGGCCGCGCACATCAACAACAAGACAAGGAAACCCTCGCTCTTTTCT
AAGGAGGGGCTGCGGCTCCTCACGTCTCCCCGGAGATGGGAGGGCGAGGG
GGAGGGAGGGATAGAGGGGGGGGTGCTGAGGGGGAGCAGTGGCATGCTGC
CTTCTCCTGGAGGAGGGGAAGGAGGAGACGGGAGGTATAGACGACTCGCC
AGCAGCAAATATCTGCTCCATGCGGACATTTCGCATGTGTACCACGAAAT
CACCGAGACGAGCGGTGTGGAGGTGGAGGCCGCACTGGTCGCTTTCCCGG
CCGCCCTCCGCTCTGGCCAAGATTCTTTCCTGAGACTGTGCTGTGATCTG
TACGAGCGCACGGGCAAGACGTGGATCTTCGAGCTGGAGGCCCCTTCGCT
CATCCTCAAGTACAAATGGACTGCCTTCGGCCGGCCCATCTACACAGGAC
TCCTCGCCCTCTCCCTCCTCCTGGCCCTCAACTACTCCCTCGCTTCCGCC
CTCCTCCTCCCCCTCCTCCACTCCAACGCTCCCTGGAGACGCACCGCGGG
CCTGGTCTGGCAAGGACTCTTGCTCGCGAACGCCTTCCCGTTGGTATGTC
AGGAATACTGGCAGTGGCACGCGCAGGGCTTCCGCGCCTACTTCTTCTCT
TGGTTCCGTCTGCTGGACCTGCTGACACTCCTCCTGACTTTTGCCTCGAT
CCTCCTCCGCTTCTTCTTGGTGAAGGGAGAGGGAGAAAAAGAGAACATTC
GCACTCTTTATCACATGCTTTCAGCCATCGCCTCCTGGCTGCTGTGGGCC
AAGCTCCTTGTCTATCTAAGAGGTTTTAAGGAGACTGGGCCCTTGATTCG
AATGATCTGGCAGATCGTCAAGGACACCCGCTTTTTCCTGGTGGTCCTGG
CCGTCTCTGTGATGGGCTTCAGCAATTGCCTTTACCTCCTCTTCCAAGAA
GACATTCAGCGCGAAGACGCCATGGGCACGACAAGCCCCATCCGATCGAG
CTACGGCTCCCTCTTCCATACGGTCCTCGTCCTCTTCGCCGCTCTCAACA
GTAACCTGGACTACCTGCCCTTCAACGCCTCCCATTTCAAGGTCCTGGTC
TCGCTCATCTACCTCTTTTACTGCGTGTGTAGCACCATTATCTTGCTGAA
CCTGCTCATCGCCCTCATGGGAGACTCCTATGACAAGGTTCAGGAGAACG
CCCTGGCCCAAGGCAGATACGAACAGGCCGTTTCCGTGCTAGAGATTGAA
GACATGCTCCCCCAACGCATTCTGCAGGATCCCCGCTTCTTCCCGCGGTG
GGTGCAAGTTCTCCGGCCCAAGCCCGGGGCTGACGGCGGCATGGTGTGTG
ACGCTGGTGCGGATCGGTGGGGTGGTCGACTCAGACAGATTTACAAAAAG
ATAGAACACAGCGAAAAACGATTGAGTCAAGACATTGAGGGGTTGTTTAA
CGCGGTGGGGAGGGAGAGGAAAGAAGGAGGAGGGGTGATGGAGGGAGGGG
TGGGGACGCGGTTGGCGCGCTTGGAGGACAACGTGGAGGGCCTGCAGGGC
AAGTTGGACCAAATTTTGGCCATGTTGCACTCAGCGGTCCAGGACGACGA
TACCTCTGACGAGGAAGACGAGACAAGCCGATAG back to topprotein sequence of NO02G00340.1 >NO02G00340.1-protein ID=NO02G00340.1-protein|Name=NO02G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=612bp
MYACICTYSCTIEYPSLLETSAVRSFFNLQPSCAGVVDLEAEESDYRANL
GPGESKTLGSAEAFPLGFWAAHINNKTRKPSLFSKEGLRLLTSPRRWEGE
GEGGIEGGVLRGSSGMLPSPGGGEGGDGRYRRLASSKYLLHADISHVYHE
ITETSGVEVEAALVAFPAALRSGQDSFLRLCCDLYERTGKTWIFELEAPS
LILKYKWTAFGRPIYTGLLALSLLLALNYSLASALLLPLLHSNAPWRRTA
GLVWQGLLLANAFPLVCQEYWQWHAQGFRAYFFSWFRLLDLLTLLLTFAS
ILLRFFLVKGEGEKENIRTLYHMLSAIASWLLWAKLLVYLRGFKETGPLI
RMIWQIVKDTRFFLVVLAVSVMGFSNCLYLLFQEDIQREDAMGTTSPIRS
SYGSLFHTVLVLFAALNSNLDYLPFNASHFKVLVSLIYLFYCVCSTIILL
NLLIALMGDSYDKVQENALAQGRYEQAVSVLEIEDMLPQRILQDPRFFPR
WVQVLRPKPGADGGMVCDAGADRWGGRLRQIYKKIEHSEKRLSQDIEGLF
NAVGRERKEGGGVMEGGVGTRLARLEDNVEGLQGKLDQILAMLHSAVQDD
DTSDEEDETSR* back to topmRNA from alignment at chr2:118198..121673- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G00340.1 ID=NO02G00340.1|Name=NO02G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=3476bp|location=Sequence derived from alignment at chr2:118198..121673- (Nannochloropsis oceanica)
AAGAAACTCAAGAACATGAAAGAAAGACGTAGTAAAAAATGGGCAGAGGG
AGGGAGGGGAGGAGGGAACACGAATAGCTGCTCGTGCATTCAAACATTTT
CATACTTTCCTCCTCCCACTTATACCTATTTATACATTGCACCTTCCTAT
GTATGCATGTATATGTACGTACTCATGTACGATAGAATACCCCTCCCTCC
TGGAAACGTCGGCGGTGCGGAGTTTTTTCAACTTGCAGGTACGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGGATACAAATGTACGCCCGACCAAGCCC
AACACATCTGGATTCTATCCTTCCCTTCCCCCTCTTCTCCTTCCACTTCC
TCCGCCCAGCCCTCCTGTGCAGGCGTCGTTGACTTGGAGGCGGAAGAATC
CGATTACCGAGCGAACCTTGGGCCGGGGGAGAGCAAGACCCTCGGGTCGG
CAGAGGCATTCCCTCTCGGGTGAGGAGGGAGGGAGGGAGGAGGGGAGGAA
GGGAGGGAGGGAGGCCGGGGGAGAGCAAGACCCTCGGGTCGGCAAAGGCA
TCTCCTTCCCTCCCTCCCTCACTTCCTTCTTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCTCTTCCTCCCTCCCTCTTTCCGCAGCTTCTGGGCCG
CGCACATCAACAACAAGACAAGGAAACCCTCGCTCTTTTCTAAGGAGGGG
CTGCGGCTCCTCACGTCTCCCCGGAGATGGGAGGGCGAGGGGGAGGGAGG
GATAGAGGGGGGGGTGCTGAGGGGGAGCAGTGGCATGCTGCCTTCTCCTG
GAGGAGGGGAAGGAGGAGACGGGAGGTATAGACGACTCGCCAGCAGCAAA
TATCTGCTCCATGCGGACATTTCGCATGTGTAGGTGAAGGGAGGGAAGGA
GGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAGCACTAATGGCACTTCGG
CCATAAAATAATCCACATTTCGCTCTCTCTTCTTCCCCCGTCGCCTTCCG
CAGGTACCACGAAATCACCGAGACGAGCGGTGTGGAGGTGGAGGCCGCAC
TGGTCGCTTTCCCGGCCGCCCTCCGGTACGACCCACCCCGCCCCCCTCCC
TCCCTCCCTCCCTCCCTTCCGCTGTCCTCACATCCACTCCCCCCTTCCCT
GCCCAGCTCTGGCCAAGATTCTTTCCTGAGACTGTGCTGTGATCTGTACG
AGCGCACGGGCAAGACGTGGATCTTCGAGCTGGAGGCCCCTTCGCTCATC
CTCAAGTACAAATGGTGAGGGAGCGACGGAGGGAGGGAGAGGGTGGGAGG
GTATTGAATGAGTGTCATCCGTCGTGCTCTTGTATCTTCAAGAATGAAGC
TCTAACCTTCCTCCGTCCCTTCCTCCCTCCCGCCCTCAGGACTGCCTTCG
GCCGGCCCATCTACACAGGACTCCTCGCCCTCTCCCTCCTCCTGGCCCTC
AACTACTCCCTCGCTTCCGCCCTCCTCCTCCCCCTCCTCCACTCCAACGC
TCCCTGGAGACGCACCGCGGGCCTGGTCTGGCAAGGACTCTTGCTCGCGA
ACGCCTTCCCGTTGGTATGTCAGGAATACTGGCAGTGGCACGCGCAGGTA
GGGGGGGGGGGAGGGAGGGAGGGAGGGTAGAGAACGTCAGACCAACCTAC
ATCATCCTCATCCTTCTTGACTCTCTCTCCCTCTCTCTCTCCTTCGTTCT
CTCCTTCTCTCCCTCCCTTAGGGCTTCCGCGCCTACTTCTTCTCTTGGTT
CCGTCTGCTGGACCTGCTGACACTCCTCCTGACTTTTGCCTCGATCCTCC
TCCGCTTCTTCTTGGTGAAGGGAGAGGGAGAAAAAGAGAACATTCGCACT
CTTTATCACATGCTTTCAGGTACTGTGAGAGGGAGGGAGGGGGGGAGGGG
GGGTAGAAAGGAAGAAGCGCATGCACTCAAAACAATGTCGGTCCTCCCTC
CCTCCCTCCTTCCCCTCTCTTCCTCCCTTCCTCCCCCCCTTCCGCAGCCA
TCGCCTCCTGGCTGCTGTGGGCCAAGCTCCTTGTCTATCTAAGAGGTTTT
AAGGAGACTGGGCCCTTGATTCGAATGATCTGGCAGATCGTCAAGGACAC
CCGCTTTTTCCTGGTGGTGCGTGAAACCCTTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCTTCTCTGCCTGCTTCCAACCAACATGA
TTGTTGGGATCACGGGCGTGGCGAACCTCACATTCCTTCCGTCCCTCCCT
CCCTCCCTCCCTCCCTCCTTCTTCTCAAGGTCCTGGCCGTCTCTGTGATG
GGCTTCAGCAATTGCCTTTACCTCCTCTTCCAAGAAGACATTCAGCGCGA
AGACGCCATGGGCACGACAAGCCCCATCCGATCGAGGTAGGGAGGGAAGG
AGGGGTGCCTAACCGTGGCTTGTCGGTATAAATCATTGATCCTTGATCCT
TTTTCGCTCCACATCCTCATTTTCATCCTCCGGCCCATACTCCTGTCCTC
GGCACAGCTACGGCTCCCTCTTCCATACGGTCCTCGTCCTCTTCGCCGCT
CTCAACAGTACGTCCGCCCTTCCTTCTTCCTCGCCGTCTTCCTTTGCCCT
TCTCACCTCCCTTCCCGTCTTCCTTTTCCCTTTCCCTCCTCCTCACCTCC
TTTCCCTCCCTCCCACAGGTAACCTGGACTACCTGCCCTTCAACGCCTCC
CATTTCAAGGTCCTGGTCTCGCTCATCTACCTCTTTTACTGCGTGTGTAG
CACCATTATCTTGCTGAACCTGCTCATCGCCCTCATGGGAGACTCCTATG
ACAAGGTTCAGGAGAACGCCCTGGCCCAAGGCAGATACGAACAGGTGGAC
AGAAAGGGAGAGAGGGAAGGAAAGTTGGAGGGAAGAGGGAAAGAAGAAGG
GGTTGTGACACATTCCAGATTCCAGGTATATTTTTTAATGCTGCTTCATC
CCATCCCTTTATTGTCCTAGGCCGTTTCCGTGCTAGAGATTGAAGACATG
CTCCCCCAACGCATTCTGCAGGATCCCCGCTTCTTCCCGCGGTAGGTCCC
TCCTTCCCTCCGCCCAGCGTCTCTTTCTCTTTATTTATCAGCTTCCATCT
AACTCTCTCTTTTCGTTTCATCCCTCCACATCCATCAAGGTGGGTGCAAG
TTCTCCGGCCCAAGCCCGGGGCTGACGGCGGCATGGTGTGTGACGCTGGT
GCGGATCGGTGGGGTGGTCGACTCAGACAGATTTACAAAAAGATAGAACA
CAGCGAAAAACGATTGAGTCAAGACATTGAGGGGTTGTTTAACGCGGTGG
GGAGGGAGAGGAAAGAAGGAGGAGGGGTGATGGAGGGAGGGGTGGGGACG
CGGTTGGCGCGCTTGGAGGACAACGTGGAGGGCCTGCAGGGCAAGTTGGA
CCAAATTTTGGCCATGTTGCACTCAGCGGTCCAGGACGACGATACCTCTG
ACGAGGAAGACGAGACAAGCCGATAG back to topCoding sequence (CDS) from alignment at chr2:118198..121673- >NO02G00340.1 ID=NO02G00340.1|Name=NO02G00340.1|organism=Nannochloropsis oceanica|type=CDS|length=1836bp|location=Sequence derived from alignment at chr2:118198..121673- (Nannochloropsis oceanica)
ATGTATGCATGTATATGTACGTACTCATGTACGATAGAATACCCCTCCCT
CCTGGAAACGTCGGCGGTGCGGAGTTTTTTCAACTTGCAGCCCTCCTGTG
CAGGCGTCGTTGACTTGGAGGCGGAAGAATCCGATTACCGAGCGAACCTT
GGGCCGGGGGAGAGCAAGACCCTCGGGTCGGCAGAGGCATTCCCTCTCGG
CTTCTGGGCCGCGCACATCAACAACAAGACAAGGAAACCCTCGCTCTTTT
CTAAGGAGGGGCTGCGGCTCCTCACGTCTCCCCGGAGATGGGAGGGCGAG
GGGGAGGGAGGGATAGAGGGGGGGGTGCTGAGGGGGAGCAGTGGCATGCT
GCCTTCTCCTGGAGGAGGGGAAGGAGGAGACGGGAGGTATAGACGACTCG
CCAGCAGCAAATATCTGCTCCATGCGGACATTTCGCATGTGTACCACGAA
ATCACCGAGACGAGCGGTGTGGAGGTGGAGGCCGCACTGGTCGCTTTCCC
GGCCGCCCTCCGCTCTGGCCAAGATTCTTTCCTGAGACTGTGCTGTGATC
TGTACGAGCGCACGGGCAAGACGTGGATCTTCGAGCTGGAGGCCCCTTCG
CTCATCCTCAAGTACAAATGGACTGCCTTCGGCCGGCCCATCTACACAGG
ACTCCTCGCCCTCTCCCTCCTCCTGGCCCTCAACTACTCCCTCGCTTCCG
CCCTCCTCCTCCCCCTCCTCCACTCCAACGCTCCCTGGAGACGCACCGCG
GGCCTGGTCTGGCAAGGACTCTTGCTCGCGAACGCCTTCCCGTTGGTATG
TCAGGAATACTGGCAGTGGCACGCGCAGGGCTTCCGCGCCTACTTCTTCT
CTTGGTTCCGTCTGCTGGACCTGCTGACACTCCTCCTGACTTTTGCCTCG
ATCCTCCTCCGCTTCTTCTTGGTGAAGGGAGAGGGAGAAAAAGAGAACAT
TCGCACTCTTTATCACATGCTTTCAGCCATCGCCTCCTGGCTGCTGTGGG
CCAAGCTCCTTGTCTATCTAAGAGGTTTTAAGGAGACTGGGCCCTTGATT
CGAATGATCTGGCAGATCGTCAAGGACACCCGCTTTTTCCTGGTGGTCCT
GGCCGTCTCTGTGATGGGCTTCAGCAATTGCCTTTACCTCCTCTTCCAAG
AAGACATTCAGCGCGAAGACGCCATGGGCACGACAAGCCCCATCCGATCG
AGCTACGGCTCCCTCTTCCATACGGTCCTCGTCCTCTTCGCCGCTCTCAA
CAGTAACCTGGACTACCTGCCCTTCAACGCCTCCCATTTCAAGGTCCTGG
TCTCGCTCATCTACCTCTTTTACTGCGTGTGTAGCACCATTATCTTGCTG
AACCTGCTCATCGCCCTCATGGGAGACTCCTATGACAAGGTTCAGGAGAA
CGCCCTGGCCCAAGGCAGATACGAACAGGCCGTTTCCGTGCTAGAGATTG
AAGACATGCTCCCCCAACGCATTCTGCAGGATCCCCGCTTCTTCCCGCGG
TGGGTGCAAGTTCTCCGGCCCAAGCCCGGGGCTGACGGCGGCATGGTGTG
TGACGCTGGTGCGGATCGGTGGGGTGGTCGACTCAGACAGATTTACAAAA
AGATAGAACACAGCGAAAAACGATTGAGTCAAGACATTGAGGGGTTGTTT
AACGCGGTGGGGAGGGAGAGGAAAGAAGGAGGAGGGGTGATGGAGGGAGG
GGTGGGGACGCGGTTGGCGCGCTTGGAGGACAACGTGGAGGGCCTGCAGG
GCAAGTTGGACCAAATTTTGGCCATGTTGCACTCAGCGGTCCAGGACGAC
GATACCTCTGACGAGGAAGACGAGACAAGCCGATAG back to top
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