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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr2 | genome | chr2:83375..85853 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G00220.1 vs.
Match: CBJ26758.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 296.2 bits (757), Expect = 1.500e-76 Identity = 189/418 (45.22%), Postives = 251/418 (60.05%), Query Frame = 0
Query: 20 FKKPVFKK-----KGG--------AAKQQNKRARKQASDSGSGSSGDDEEESVLLRKQQAK---------GSKAGATATAAKTSVL--------HTYASSGSAAPAPVAGGATYTSEIDTEHDRDNRALLEMAIKVQREEEEEAVGLGGEKIYRGQAGYRNYVPKNEAQIGGNKYTGTQGPIRAPSYLRATAVFDYKPDICKDYKETGFCGFGDGCKFMHDRSDYKSGYELEQEWETQQKRKRQRD-LGEWAGSEDEEEGDDAYLIKEDDDLPFACFLCREGFRDPVVTVCGHYFCSSCALQHHKTDPTCPACGEKTGGVFNFAVKLFEKMKKDEAKRKAVEEKDGQRAALGKETVAIAAAKRRKKKKEEEEAEGVEGEGEGEEEEGGEEGEE--ELVIQEEDKDTVVKKKKGTWSTL 405
FK+P FKK KGG K + K A GSG S +++ +V+ ++ K G GA A AA L + SS +A P AGGAT+ +EIDT+ DRD RA+LE I++ EE + +Y G AGY+N++ K+EAQIGGNK+TGTQGPIRAP++LRAT FDY+PDICKDYKETGFCGFGD CKF+HDR+DYKSG+ +EQE+E ++K++++R+ LGEWA E+EEE YL++ DDDLPFAC +CR+GF DP+VT CGHYFC CA +H+KT+P C ACG++T GVFN A KL EK++K K +KE+ A G G G +E GG+ E E +Q + D VV++K GTW+T+
Sbjct: 33 FKRPAFKKRIPASKGGMRNNKRSRVTKGEGKGA------GGSGGSSSEDDVAVVKADKKGKKGVNNFSTGGGSGGAEARAAAREALAKETMSAGSLFDSSRTAVPVSNAGGATHYTEIDTQADRDTRAILEKNIRLN----EEGATTDKDGLYHGMAGYKNHIKKDEAQIGGNKHTGTQGPIRAPTFLRATCRFDYQPDICKDYKETGFCGFGDSCKFLHDRADYKSGWAMEQEFEAKEKKRKEREALGEWAEEENEEE----YLVESDDDLPFACLICRQGFVDPIVTNCGHYFCERCAQEHYKTNPRCAACGKQTQGVFNAAKKLTEKLRK----------------------------KGMVTRKEQAGAAG-GGASAGADEGGGDSDYEIREDGVQLTETD-VVRRKTGTWATV 406
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G00220.1 ID=NO02G00220.1|Name=NO02G00220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1235bp
CAGGCCATACGCACGCAGGCATGGCCGACAGCACAGGTGATGGCGGCGGC
GGAGAGGGGGGCAAGCCAGTGTGCGTCTTCAAGAAACCCGTTTTCAAGAA
GAAGGGAGGAGCAGCAAAACAACAAAACAAACGGGCGCGAAAGCAGGCCA
GCGACTCGGGCTCCGGCAGCTCGGGCGACGACGAGGAAGAATCTGTTCTA
TTAAGAAAGCAGCAAGCTAAAGGATCAAAAGCGGGGGCCACAGCCACCGC
CGCCAAGACTAGCGTCCTCCACACCTACGCCTCCTCGGGGAGTGCTGCTC
CTGCTCCTGTGGCTGGGGGCGCCACCTACACCAGTGAAATTGACACGGAG
CACGACAGAGACAACAGAGCGTTGTTAGAAATGGCCATTAAGGTCCAGAG
GGAGGAGGAGGAGGAAGCGGTCGGACTGGGGGGGGAGAAGATCTATAGAG
GACAGGCGGGGTACCGAAATTACGTGCCTAAGAACGAGGCGCAGATTGGT
GGGAATAAGTACACGGGGACGCAGGGCCCCATCCGTGCCCCCTCCTACTT
GCGTGCGACGGCCGTCTTCGACTACAAGCCCGACATCTGCAAGGACTACA
AGGAAACGGGCTTCTGCGGCTTCGGCGACGGCTGCAAATTCATGCACGAC
CGAAGCGACTACAAGAGTGGGTATGAGCTGGAGCAAGAGTGGGAAACGCA
GCAGAAGAGGAAGCGACAACGCGACCTCGGGGAGTGGGCCGGGTCAGAGG
ATGAGGAGGAGGGCGATGATGCCTACCTGATCAAGGAGGATGACGACCTT
CCTTTCGCTTGCTTCTTGTGCCGCGAGGGCTTCCGCGATCCGGTAGTGAC
GGTGTGTGGGCATTACTTCTGCTCATCATGCGCCCTCCAACACCACAAGA
CGGACCCCACCTGCCCGGCCTGTGGGGAGAAGACAGGCGGAGTCTTTAAT
TTTGCGGTCAAGCTGTTCGAGAAGATGAAGAAGGACGAGGCGAAACGGAA
GGCGGTGGAGGAGAAGGACGGACAGCGGGCTGCTCTCGGGAAGGAGACGG
TGGCGATCGCGGCCGCGAAGAGGAGGAAAAAGAAGAAGGAGGAGGAGGAG
GCGGAGGGGGTGGAAGGGGAGGGGGAGGGGGAGGAGGAGGAAGGGGGGGA
GGAAGGGGAGGAGGAGCTGGTGATTCAGGAGGAGGACAAAGACACGGTGG
TGAAGAAGAAGAAGGGGACCTGGAGCACCCTGTGA back to topprotein sequence of NO02G00220.1 >NO02G00220.1-protein ID=NO02G00220.1-protein|Name=NO02G00220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MADSTGDGGGGEGGKPVCVFKKPVFKKKGGAAKQQNKRARKQASDSGSGS
SGDDEEESVLLRKQQAKGSKAGATATAAKTSVLHTYASSGSAAPAPVAGG
ATYTSEIDTEHDRDNRALLEMAIKVQREEEEEAVGLGGEKIYRGQAGYRN
YVPKNEAQIGGNKYTGTQGPIRAPSYLRATAVFDYKPDICKDYKETGFCG
FGDGCKFMHDRSDYKSGYELEQEWETQQKRKRQRDLGEWAGSEDEEEGDD
AYLIKEDDDLPFACFLCREGFRDPVVTVCGHYFCSSCALQHHKTDPTCPA
CGEKTGGVFNFAVKLFEKMKKDEAKRKAVEEKDGQRAALGKETVAIAAAK
RRKKKKEEEEAEGVEGEGEGEEEEGGEEGEEELVIQEEDKDTVVKKKKGT
WSTL* back to topmRNA from alignment at chr2:83375..85853- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G00220.1 ID=NO02G00220.1|Name=NO02G00220.1|organism=Nannochloropsis oceanica|type=mRNA|length=2479bp|location=Sequence derived from alignment at chr2:83375..85853- (Nannochloropsis oceanica)
CAGGCCATACGCACGCAGGCATGGCCGACAGCACAGGTGATGGCGGCGGC
GGAGAGGGGGGCAAGCCAGGTGAGTCCTAGGTGAAAATCAAGTCCGTCGT
GTGTGCTGCGGCTCGAATCACTTCCTCCCTCCCTCCTCCCTCTTTCCGTT
CCCCTCCCTTCCTAGTGTGCGTCTTCAAGAAACCCGTTTTCAAGAAGAAG
GGAGGAGCAGCAAAACAACAAAACAAACGGGCGCGAAAGCAGGCCAGCGA
CTCGGGCTCCGGCAGGTAGGGTAGAGATGAAGGAAAGAAGGGAGGACAGG
CGGGCTTGTCTCAGTACAAGCCTTCTCGCACACTCTCACACACGCATCCC
CTACGCCCTTATACTCCCCAGCTCGGGCGACGACGAGGAAGAATCTGTTC
TATTAAGAAAGCAGCAAGCTAAAGGATCAAAAGCGGGGGCCACAGCCACC
GCCGCCAAGACTAGCGTCCTCCACACCTACGCCTCCTCGGGGAGTGCTGC
TCCTGCTCCTGTGGCTGGGGGCGCCACCTACACCAGTGAAATTGACACGG
AGCACGACAGAGACAACAGAGCGTTGTTAGAAATGGCCATTAAGGTCCAG
AGGGAGGAGGAGGAGGAAGCGGTCGGACTGGGGGGGGAGAAGATCTATAG
AGGACAGGTGAGGAGGGCATCGAGAAGGAAGGGAGGGAGGGAGGAAGGGA
GGGAGTTGCCTGAAATTCCACCTCATCTCAGTCATCCATGTTCTGATCGT
TCTCACCTTCTTCCTTCCTTTCCTTTATTCAGGCGGGGTACCGAAATTAC
GTGCCTAAGAACGAGGCGCAGATTGGTGGGAATAAGTACACGGGGACGCA
GGTGAGAGAGGGGAAAAGGGAGGGAGGGGGCCGAGGAGGTGGATAGACAG
GGGCCGAACGGCTCAAAAGGGGAGTTGTTAAGGGCCCTTCGTTGTTTGTG
GGCTCACCCTGCAAATGGAGCTTCCCTGTTCTGCCTTTATTGCCTCTTTC
ATTCTTTGCGCACACCCACCAGAGGCTCTGCCCACCACAACTTGACCTCA
CCACTCACACTCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCTCCCCCATCCCAGGGCCCCATCCGTGCCCCCTCCTACTTGCGTGC
GACGGCCGTCTTCGACTACAAGCCCGACATCTGCAAGGACTACAAGGAAA
CGGGCTTCTGCGGCTTCGGGTACCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTTCAACCTTCCTTTGATTGCTCCTGACACCTTCGCCCTCC
CTCCCTCCCTCCCTCTTGCCCGCCCTCCCTCCCTCCCTCCCTCAGCGACG
GCTGCAAATTCATGCACGACCGAAGCGACTACAAGAGTGGGTATGAGCTG
GAGCAAGAGTGGGAAACGCAGCAGAAGAGGAAGCGACAACGGTAATGAGG
AAGGGAGGGAGGGAGGGAGCAAGGAGAGATGAAGGTCTGTCTGTCACGTC
ACACTTGGAAACTTTGTCGGAAACGTTATCATCCATCCCCTCCCTCCCTC
CCTCCTTCCCTCCCTCCCTTCCTCCCTCCCCCAGCGACCTCGGGGAGTGG
GCCGGGTCAGAGGATGAGGAGGAGGGCGATGATGCCTACCTGATCAAGGA
GGATGACGACCTTCCTTTCGCTTGCTTCTTGTGCCGCGAGGGTGAGGAAG
GAAGGGAAAGAGGGAGGGATGGAGGGAGGGCGGAAGGGAGGGAGGGGGGA
AGATGGCAAATATCAGTTTACAAACATGCTATTATTTTTGTCACACGCTT
TTCCGCCGTCCTTCCCTCCCTCCCTCCCTCCCCCCCTCAGGCTTCCGCGA
TCCGGTAGTGACGGTGTGTGGGCATTACTTCTGCTCATCATGCGCCCTCC
AACACCACAAGACGGACCCCACCTGCCCGGCCTGTGGGGAGAAGACAGGT
AGGTTAGGGCGAACGGTGAAGCGAGCAAGCAACCTCGCCCTCCTCTCTTC
CTTCCCTCCATCCCTCTCTCCCTCGATTGATCGATCTCTTACTCGTAGGT
GGGTCCTGGACGGAATGAAGCGTTGCTGAGACTCACACGAAAAAAGTCGT
CGTCTGTTCTGACTCCTGCCCTCTCTCCCTCCTTCCTTTCTCCCTCCTTC
CCTCCCTCCCTCCTTCTTTCCCTCCTCCAGGCGGAGTCTTTAATTTTGCG
GTCAAGCTGTTCGAGAAGATGAAGAAGGACGAGGCGAAACGGAAGGCGGT
GGAGGAGAAGGACGGACAGCGGGCTGCTCTCGGGAAGGAGACGGTGGCGA
TCGCGGCCGCGAAGAGGAGGAAAAAGAAGAAGGAGGAGGAGGAGGCGGAG
GGGGTGGAAGGGGAGGGGGAGGGGGAGGAGGAGGAAGGGGGGGAGGAAGG
GGAGGAGGAGCTGGTGATTCAGGAGGAGGACAAAGACACGGTGGTGAAGA
AGAAGAAGGGGACCTGGAGCACCCTGTGA back to topCoding sequence (CDS) from alignment at chr2:83375..85853- >NO02G00220.1 ID=NO02G00220.1|Name=NO02G00220.1|organism=Nannochloropsis oceanica|type=CDS|length=1215bp|location=Sequence derived from alignment at chr2:83375..85853- (Nannochloropsis oceanica)
ATGGCCGACAGCACAGGTGATGGCGGCGGCGGAGAGGGGGGCAAGCCAGT
GTGCGTCTTCAAGAAACCCGTTTTCAAGAAGAAGGGAGGAGCAGCAAAAC
AACAAAACAAACGGGCGCGAAAGCAGGCCAGCGACTCGGGCTCCGGCAGC
TCGGGCGACGACGAGGAAGAATCTGTTCTATTAAGAAAGCAGCAAGCTAA
AGGATCAAAAGCGGGGGCCACAGCCACCGCCGCCAAGACTAGCGTCCTCC
ACACCTACGCCTCCTCGGGGAGTGCTGCTCCTGCTCCTGTGGCTGGGGGC
GCCACCTACACCAGTGAAATTGACACGGAGCACGACAGAGACAACAGAGC
GTTGTTAGAAATGGCCATTAAGGTCCAGAGGGAGGAGGAGGAGGAAGCGG
TCGGACTGGGGGGGGAGAAGATCTATAGAGGACAGGCGGGGTACCGAAAT
TACGTGCCTAAGAACGAGGCGCAGATTGGTGGGAATAAGTACACGGGGAC
GCAGGGCCCCATCCGTGCCCCCTCCTACTTGCGTGCGACGGCCGTCTTCG
ACTACAAGCCCGACATCTGCAAGGACTACAAGGAAACGGGCTTCTGCGGC
TTCGGCGACGGCTGCAAATTCATGCACGACCGAAGCGACTACAAGAGTGG
GTATGAGCTGGAGCAAGAGTGGGAAACGCAGCAGAAGAGGAAGCGACAAC
GCGACCTCGGGGAGTGGGCCGGGTCAGAGGATGAGGAGGAGGGCGATGAT
GCCTACCTGATCAAGGAGGATGACGACCTTCCTTTCGCTTGCTTCTTGTG
CCGCGAGGGCTTCCGCGATCCGGTAGTGACGGTGTGTGGGCATTACTTCT
GCTCATCATGCGCCCTCCAACACCACAAGACGGACCCCACCTGCCCGGCC
TGTGGGGAGAAGACAGGCGGAGTCTTTAATTTTGCGGTCAAGCTGTTCGA
GAAGATGAAGAAGGACGAGGCGAAACGGAAGGCGGTGGAGGAGAAGGACG
GACAGCGGGCTGCTCTCGGGAAGGAGACGGTGGCGATCGCGGCCGCGAAG
AGGAGGAAAAAGAAGAAGGAGGAGGAGGAGGCGGAGGGGGTGGAAGGGGA
GGGGGAGGGGGAGGAGGAGGAAGGGGGGGAGGAAGGGGAGGAGGAGCTGG
TGATTCAGGAGGAGGACAAAGACACGGTGGTGAAGAAGAAGAAGGGGACC
TGGAGCACCCTGTGA back to top
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