NO01G05620.1, NO01G05620.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G05620.1
Unique Name	NO01G05620.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1755
Alignment location	chr1:1559593..1562460 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:1559593..1562460 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO01G05620.1 vs.
Match: OCK86037.1 (hypothetical protein K432DRAFT_388149 [Lepidopterella palustris CBS 459.81])

HSP 1 Score: 183.3 bits (464), Expect = 1.800e-42
Identity = 106/242 (43.80%), Postives = 146/242 (60.33%), Query Frame = 0

Query:  173 PLVGTCMEVEKEYLRSMEEVDPSTVRPLSVLREALHRVKAHWTINEDYPYACSQLKSIRQDLRVQHIEDAFTVHVYETHARIALEAGDLGEFLVAAARLDDIRRLHASSPSSFPTSSSSSSISSSAEFLAYRLLHALYLAHPAQIRLLLLQAREEEEIWCHPAIVHARAVVSADAQGNFHRFFHLYTRAPHMSAYLMDFLLLRMRRLALSRVLVAYGPETLPLLFLSQELGFETEAECREYV 415
            P+VGTC E+EK+Y R      P TVRPL VL + L  +K  W    +Y Y C Q KS+RQDL VQHI++AFTV+VYE HARIALE GDLGE+     +L   R L++ +    P           AEFLAYR+L+ ++  +   +  +L      ++     A+ HA  V SA A GN+HRFF LY  AP+M +YLMD  + R R  AL+ +  AY P+ + + FL++ELGFE++ EC E++
Sbjct:  252 PVVGTCQELEKKYFRLTAPPKPETVRPLVVLEQTLELLKKKWRQENNYGYICDQFKSLRQDLTVQHIKNAFTVNVYEIHARIALEKGDLGEYNQCQTQL---RALYSQNLGGNP-----------AEFLAYRILYFIHTCNRTDMNDVLADLTPADK--SQHAVQHALKVRSALAMGNYHRFFQLYLDAPNMGSYLMDMFIDRERLAALANICKAYKPD-VKIRFLTEELGFESDPECIEFL 476

The following BLAST results are available for this feature:

BLAST of NO01G05620.1 vs.

BLAST of NO01G05620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
OCK86037.1	1.800e-42	43.80	hypothetical protein K432DRAFT_388149 [Lepidoptere...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G05620	NO01G05620	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G05620.1	NO01G05620.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G05620.1.cds1	NO01G05620.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05620.1.cds2	NO01G05620.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05620.1.cds3	NO01G05620.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05620.1.cds4	NO01G05620.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05620.1.cds5	NO01G05620.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05620.1.cds6	NO01G05620.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05620.1.cds7	NO01G05620.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:1559593..1562460-
coding sequence from alignment at chr1:1559593..1562460-

mRNA sequence

>NO01G05620.1 ID=NO01G05620.1|Name=NO01G05620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1755bp
AGGTCGTCCGGGATACTTTTGTACAAAACCTCCTGGTGTCGAGGATAGCC
GCCCTGCCAAAATCTGACCTAGAGTGATGGTTTTCTCGTCCTGCTTCTCG
AACGATGATTTCAATTTATTTGATGGGCGGGCGAGAGTAGGAGAAAATGC
CAGCATCTCTGTCGTGGAGGGGGAGGCAGATGGCGAGCCTCTTGCTAAAG
CGTGTGATCTGATCGCCGCCTTGCTCTAACACGCACTAATTGGCACAACG
GCACATCGCTTTGCATGCAAACACAGGCACACACCATGAAGGAAAAAAAC
GAGAAAATTAAGAAGAAGGTCAAGAAGCGGAAACATCACAAGGAAGAGGA
AGAAGACGGCTGTGACGATGCCAAGGAGGGACATAAGCTTGACAAGAAGC
TTCGGAAGTTGCTGCATCTCGCCCCTGCCACGGCGCAGGCGTGTCATGCT
CCCTCCTCCTTTCCGACACCACCCAAGGGGCCGCCTCCTCCCCGTCTCCC
TCCCGTAGCCCCACTACCACCTCAAGTACCGCATCCGACTGGCGTTACTA
ACCAAGTCAAAGGCGTGAATTTTTCGACTGCTCCTAAATCAAACGTCCCA
ATCCCACTTCTCCGCGCTGACGCCGAGGAGATCCGCCGACGCCAAGCCAG
GGCACAGCGCTTTGCCGCCTCTTCCCCCCTCGCGTCCTCCCGCCCTTCCA
CCTCCTCCTCTTCGACTTTCTCCTCGCAAGGAAATAGAAATGGGAAAGAT
GTCAAAGAGACATATCACAAAAGGACGCGGCCTCTGGTAGGCACGTGCAT
GGAGGTGGAGAAGGAGTACCTGCGGTCGATGGAGGAGGTTGACCCAAGCA
CCGTGAGGCCGCTCAGCGTGCTGCGTGAGGCCCTGCACCGGGTGAAGGCT
CATTGGACTATAAATGAAGACTATCCATACGCCTGCTCCCAATTGAAGAG
CATTCGACAGGACCTGCGGGTGCAGCACATCGAAGATGCCTTCACAGTGC
ATGTGTATGAGACGCATGCCCGGATTGCCCTGGAGGCCGGGGATTTAGGC
GAGTTCTTGGTGGCTGCGGCCAGGCTGGACGACATTAGGCGCCTTCACGC
CTCCTCCCCTTCTTCCTTCCCTACCTCCTCCTCCTCCTCCTCAATCTCGT
CTTCAGCCGAGTTCCTGGCCTACCGCCTCCTCCATGCCCTCTACCTCGCC
CACCCCGCGCAGATCCGCCTCCTTTTGCTCCAGGCACGGGAGGAGGAAGA
GATATGGTGCCACCCGGCGATTGTGCATGCGCGAGCTGTCGTAAGTGCGG
ATGCCCAAGGGAACTTCCATCGCTTCTTTCACCTCTACACCCGGGCGCCC
CACATGTCCGCCTACCTTATGGACTTCCTCCTTCTACGCATGCGGCGCCT
CGCTCTGTCCCGTGTGCTTGTTGCGTATGGTCCCGAAACCCTCCCCCTCC
TCTTCCTCAGCCAGGAGCTGGGGTTCGAAACGGAGGCAGAATGCAGGGAG
TATGTGGAGGGGAAGGAGGGGTGGGTGGTAAGGAGGGAGGGAGTGAGGGG
GGGCCGGTGGATGGTGCACTTGAGGGAGACGAGGATGAGGAGGAAAGATG
GTGGAAGAAAAATAGTGGAGGGAAGGGCGGAGGAGGAGGAGGAGGAGGAG
GAGGAGAGGGAGCAGGGTGAAAGGATGAAGATGAAAATGAAAAAGGAGAA
GATAAAAAAGATGAAGAGGAAGGAAGAGACGAAGAAGAAAAAGGGCAGCC
ATTGA

protein sequence of NO01G05620.1

>NO01G05620.1-protein ID=NO01G05620.1-protein|Name=NO01G05620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=497bp
MQTQAHTMKEKNEKIKKKVKKRKHHKEEEEDGCDDAKEGHKLDKKLRKLL
HLAPATAQACHAPSSFPTPPKGPPPPRLPPVAPLPPQVPHPTGVTNQVKG
VNFSTAPKSNVPIPLLRADAEEIRRRQARAQRFAASSPLASSRPSTSSSS
TFSSQGNRNGKDVKETYHKRTRPLVGTCMEVEKEYLRSMEEVDPSTVRPL
SVLREALHRVKAHWTINEDYPYACSQLKSIRQDLRVQHIEDAFTVHVYET
HARIALEAGDLGEFLVAAARLDDIRRLHASSPSSFPTSSSSSSISSSAEF
LAYRLLHALYLAHPAQIRLLLLQAREEEEIWCHPAIVHARAVVSADAQGN
FHRFFHLYTRAPHMSAYLMDFLLLRMRRLALSRVLVAYGPETLPLLFLSQ
ELGFETEAECREYVEGKEGWVVRREGVRGGRWMVHLRETRMRRKDGGRKI
VEGRAEEEEEEEEEREQGERMKMKMKKEKIKKMKRKEETKKKKGSH*

mRNA from alignment at chr1:1559593..1562460-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G05620.1 ID=NO01G05620.1|Name=NO01G05620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2868bp|location=Sequence derived from alignment at chr1:1559593..1562460- (Nannochloropsis oceanica)
AGGTCGTCCGGGATACTTTTGTACAAAACCTCCTGGTGTCGAGGATAGCC
GCCCTGCCAAAATCTGACCTAGAGTGATGGTTTTCTCGTCCTGCTTCTCG
AACGATGATTTCAATTTATTTGATGGGCGGGCGAGAGTAGGAGAAAATGC
CAGCATCTCTGTCGTGGAGGGGGAGGCAGATGGCGAGCCTCTTGCTAAAG
CGTGTGATCTGATCGCCGCCTTGCTCTAACACGCACTAATTGGCACAACG
GCACATCGCTTTGCATGCAAACACAGGCACACACCATGAAGGAAAAAAAC
GAGAAAATTAAGAAGAAGGTCAAGAAGCGGAAACATCACAAGGTACGAAG
AGATGATGGGAAGACTGGCAGCAGAGCCGGGGCCTGTAAAGCGCGTGTTT
ACTTCCCGCCCCATCCCTTCCACGTACACCATCAGGAAGAGGAAGAAGAC
GGCTGTGACGATGCCAAGGAGGGACATAAGCTTGACAAGAAGCTTCGGAA
GTTGCTGCATCTCGCCCCTGCCACGGCGCAGGCGTGTCATGCTCCCTCCT
CCTTTCCGACACCACCCAAGGGGCCGCCTCCTCCCCGTCTCCCTCCCGTA
GCCCCACTACCACCTCAAGTACCGCATCCGACTGGCGTTACTAACCAAGT
CAAAGGCGTGAATTTTTCGACTGCTCCTAAATCAAACGTCCCAATCCCAC
TTCTCCGCGCTGACGCCGAGGAGATCCGCCGACGCCAAGCCAGGGCACAG
CGCTTTGCCGCCTCTTCCCCCCTCGCGTCCTCCCGCCCTTCCACCTCCTC
CTCTTCGACTTTCTCCTCGCAAGGAAATAGAAATGGGAAAGATGTCAAAG
AGACATATCACAAAAGGACGCGGCCTCTGGTAGGCACGTGCATGGAGGTG
GAGAAGGAGTACCTGCGGTCGATGGAGGAGGTTGACCCAAGCACCGTGAG
GCCGCTCAGCGTGCTGCGTGAGGTGGGGAGGGAGGGAGAGAGGAAGGAAG
GGAGGGAGGAAGGAAGTGAGGAAGGGAGGGGGAGAGTGCATTACATGACA
TGGCTTATCGCATTAACTTACATTACGTTACATACATTACACGTGTGTAC
GCATCAAATCACACTTCCCCCCTTTCTTTCAACCTCCTCCCTCCCTCCCT
CTCTCTCTCCCTCCCTCCTTCCCCGCCCCCCGTCCTGTCCTCTCGCAGGC
CCTGCACCGGGTGAAGGCTCATTGGACTATAAATGAAGACTATCCATACG
CCTGCTCCCAATTGAAGAGCATTCGACAGGACCTGCGGGTGCAGCACATC
GAAGATGCCTTCACAGTGCATGTAGGGTGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGAAGGGAGGAAGGGAGAGGGGAAGGGA
GGAAGGGCGGAGGAGAGAGAGGGGGGTTGAAGGGCAGAAAGTTAAATAAC
TAAGATATTTACACACGAGGATAAGGTCGTGATTCACCATCCCCACTCAC
TCAATGACTGGATGGATGCATGGATGCATGGACAGGTGTATGAGACGCAT
GCCCGGATTGCCCTGGAGGCCGGGGATTTAGGCGAGTTCTTGGTGGCTGC
GGCCAGGCTGGACGACATTAGGTGCGTGCGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGGAGCTTGATGGTCCCTGCCGACGGT
CTTCACTTCCCTTTTTTCGTTCTTTAGCTTCCGATCCATTCCGTCATCAT
CATCTTATAGCTCACGGTATGATCGTCGTCGGATGCCTCCTTCTTATTCT
CCCTCCCTCCCTACGCAGGCGCCTTCACGCCTCCTCCCCTTCTTCCTTCC
CTACCTCCTCCTCCTCCTCCTCAATCTCGTCTTCAGCCGAGTTCCTGGCC
TACCGCCTCCTCCATGCCCTCTACCTCGCCCACCCCGCGCAGATCCGCCT
CCTTTTGCTCCAGGCACGGGAGGAGGAAGAGATATGGTGCCACCCGGCGA
TTGTGCATGTACGTTACGATCGTGGAGGAGGGAGAAAGGAAGAGAAGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGG
AGGGGTATCTGTGCTGCTTCGACCGACCATCTCCCCTCTCGCACTCTTCC
CCCTATCCCTACTTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCT
CCTCTCCCTCCTCCTCCTCCTCCCCCTTCCTGTACCCCAGGCGCGAGCTG
TCGTAAGTGCGGATGCCCAAGGGAACTTCCATCGCTTCTTTCACCTCTAC
ACCCGGGCGCCCCACATGTCCGCCTACCTTATGGACTTCCTCCTTCTGTA
AGTCTGCCATCCATCCATCCATCCCTCCCTCCCTCCCTTCCTCCCCCCTA
TCGGAAGCGGGCACGTGCCGTGCTCTCTCCTCTCTTACTCGCCTACCATC
CTCCCCCTTCCTCCCTTCTTCCCTCCCTCCCCCTTTGTATCGTCGCAGAC
GCATGCGGCGCCTCGCTCTGTCCCGTGTGCTTGTTGCGTATGGTCCCGAA
ACCCTCCCCCTCCTCTTCCTCAGCCAGGAGCTGGGGTTCGAAACGGAGGC
AGAATGCAGGGAGTATGTGGAGGGGAAGGAGGGGTGGGTGGTAAGGAGGG
AGGGAGTGAGGGGGGGCCGGTGGATGGTGCACTTGAGGGAGACGAGGATG
AGGAGGAAAGATGGTGGAAGAAAAATAGTGGAGGGAAGGGCGGAGGAGGA
GGAGGAGGAGGAGGAGGAGAGGGAGCAGGGTGAAAGGATGAAGATGAAAA
TGAAAAAGGAGAAGATAAAAAAGATGAAGAGGAAGGAAGAGACGAAGAAG
AAAAAGGGCAGCCATTGA

Coding sequence (CDS) from alignment at chr1:1559593..1562460-

>NO01G05620.1 ID=NO01G05620.1|Name=NO01G05620.1|organism=Nannochloropsis oceanica|type=CDS|length=1491bp|location=Sequence derived from alignment at chr1:1559593..1562460- (Nannochloropsis oceanica)
ATGCAAACACAGGCACACACCATGAAGGAAAAAAACGAGAAAATTAAGAA
GAAGGTCAAGAAGCGGAAACATCACAAGGAAGAGGAAGAAGACGGCTGTG
ACGATGCCAAGGAGGGACATAAGCTTGACAAGAAGCTTCGGAAGTTGCTG
CATCTCGCCCCTGCCACGGCGCAGGCGTGTCATGCTCCCTCCTCCTTTCC
GACACCACCCAAGGGGCCGCCTCCTCCCCGTCTCCCTCCCGTAGCCCCAC
TACCACCTCAAGTACCGCATCCGACTGGCGTTACTAACCAAGTCAAAGGC
GTGAATTTTTCGACTGCTCCTAAATCAAACGTCCCAATCCCACTTCTCCG
CGCTGACGCCGAGGAGATCCGCCGACGCCAAGCCAGGGCACAGCGCTTTG
CCGCCTCTTCCCCCCTCGCGTCCTCCCGCCCTTCCACCTCCTCCTCTTCG
ACTTTCTCCTCGCAAGGAAATAGAAATGGGAAAGATGTCAAAGAGACATA
TCACAAAAGGACGCGGCCTCTGGTAGGCACGTGCATGGAGGTGGAGAAGG
AGTACCTGCGGTCGATGGAGGAGGTTGACCCAAGCACCGTGAGGCCGCTC
AGCGTGCTGCGTGAGGCCCTGCACCGGGTGAAGGCTCATTGGACTATAAA
TGAAGACTATCCATACGCCTGCTCCCAATTGAAGAGCATTCGACAGGACC
TGCGGGTGCAGCACATCGAAGATGCCTTCACAGTGCATGTGTATGAGACG
CATGCCCGGATTGCCCTGGAGGCCGGGGATTTAGGCGAGTTCTTGGTGGC
TGCGGCCAGGCTGGACGACATTAGGCGCCTTCACGCCTCCTCCCCTTCTT
CCTTCCCTACCTCCTCCTCCTCCTCCTCAATCTCGTCTTCAGCCGAGTTC
CTGGCCTACCGCCTCCTCCATGCCCTCTACCTCGCCCACCCCGCGCAGAT
CCGCCTCCTTTTGCTCCAGGCACGGGAGGAGGAAGAGATATGGTGCCACC
CGGCGATTGTGCATGCGCGAGCTGTCGTAAGTGCGGATGCCCAAGGGAAC
TTCCATCGCTTCTTTCACCTCTACACCCGGGCGCCCCACATGTCCGCCTA
CCTTATGGACTTCCTCCTTCTACGCATGCGGCGCCTCGCTCTGTCCCGTG
TGCTTGTTGCGTATGGTCCCGAAACCCTCCCCCTCCTCTTCCTCAGCCAG
GAGCTGGGGTTCGAAACGGAGGCAGAATGCAGGGAGTATGTGGAGGGGAA
GGAGGGGTGGGTGGTAAGGAGGGAGGGAGTGAGGGGGGGCCGGTGGATGG
TGCACTTGAGGGAGACGAGGATGAGGAGGAAAGATGGTGGAAGAAAAATA
GTGGAGGGAAGGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGGAGCA
GGGTGAAAGGATGAAGATGAAAATGAAAAAGGAGAAGATAAAAAAGATGA
AGAGGAAGGAAGAGACGAAGAAGAAAAAGGGCAGCCATTGA

Synonyms

Publications