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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1514728..1518709 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G05520.2 vs.
Match: EWM22766.1 (Protein of unknown function DUF1350 [Nannochloropsis gaditana]) HSP 1 Score: 476.9 bits (1226), Expect = 7.200e-131 Identity = 275/424 (64.86%), Postives = 324/424 (76.42%), Query Frame = 0
Query: 27 PSALAWGRGAGGGAYGGTSSSSLYMAGRDTCFSHSLFLNPSSHQFVGTSSTAGRGIPRQRSTTMMRMRTNTPTSSSSSSPFLPSSISAFRPSSTRLAVTVEVVTDDDLSS--SLR-RGRGREGRQAGGGEWRKVDDEVEVLFPEAFAQPKGIIHFVGGAVVGAFPRAAYGPLLERLARQGYCIIATSLPFSLFDHAAGARLLAVAYARGENYVEGVYGPRIRQQLPVFGLGHSLGAKMHVLLGSSPPSLPPSSSSSSPSPYRSKRRANVLVAFNNFSAQESVPLLDEMRNLGLSIGGMGLSSKLEDVSRLITSLSALDLSGASSPNSRRETNSGFDLASKGLNMAMSFLSSLPTDIPSDFTPSPDETWALLSSPP----PSAPASSPFYSVPSNLVVSFDKDTIDQSPRLLSLLQQRGREGGRG 444
P AWG+ G T +SL M+ RD CFSH+L L P H V + + + +TM R RT +SSS+SS P S FR S+TRL +V +DDLSS SLR + R + G Q GGEW++VD+ V+V FPEA A PKG++HFVGGAVVGAFPRAAYGPLLERL RQGYC+IAT+LPFSLFDHAAGAR LA+AYARGE YVEGVYGPR+RQQLPVFGLGHSLGAKM +LLGS PPSLP SSSS+P+ RRANVLVAFNNFSA++SVPLL+E+R LG S+ GM LS KLED+SR+++SL+AL+LSGASSPN++RET SGFDLASKGL MAM FLSSLPT DFTPSP+ETWALLSSPP S P+SSP Y+V +NLVVSFDKDTIDQS L++LL++RGREGGRG
Sbjct: 17 PYVQAWGQSGSRSDGGRTMDASLAMSSRDICFSHALVLRP--HARVPSPFS-------ESPSTMARFRTCMSSSSSTSSAAWPPS--RFRASTTRLTARAQVFDEDDLSSAPSLRTQPRTKPGTQ--GGEWQRVDEGVDVFFPEASAPPKGLVHFVGGAVVGAFPRAAYGPLLERLGRQGYCVIATALPFSLFDHAAGARALAMAYARGEAYVEGVYGPRVRQQLPVFGLGHSLGAKMLILLGSPPPSLPSFSSSSAPT--AGPRRANVLVAFNNFSAKQSVPLLEELRELGQSVAGMDLSGKLEDISRMVSSLAALNLSGASSPNAQRETTSGFDLASKGLTMAMDFLSSLPTSGVPDFTPSPEETWALLSSPPLFPSSSLPSSSPSYAVLNNLVVSFDKDTIDQSEELVALLRERGREGGRG 425
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G05520.2 ID=NO01G05520.2|Name=NO01G05520.2|organism=Nannochloropsis oceanica|type=mRNA|length=2815bp CATCAGAATCACAGGCCAGTAGCAAACCTGAGACTCGCATAACTAAGAGG ACGACCACGCTCATGACTTCGACGGAGTCACAACGGCAAGGGTCAACATC CCGCCTACACGCCGTGTCCTACCGCAGCTTTCGCACCCTTCTAATCGGTA TGTACACACATATCTGGTTGCTTCCTTGGCCGAAAAAAAATGTGTCGTGT CTCTTATGTCTTACTTCATCCCACCCCATCCTCCACCTCTCCAACCCGCA ACACAGGAGCCCTCTTACCCTCCGCCCTGGCCTGGGGGCGTGGAGCCGGA GGCGGCGCTTACGGTGGAACCAGTTCCTCGAGTCTGTATATGGCCGGTCG TGACACCTGCTTCAGCCATTCCCTTTTCTTGAATCCGTCTTCACACCAAT TCGTGGGAACTTCCTCCACAGCGGGCCGCGGTATTCCCCGACAGCGGTCC ACAACCATGATGCGCATGCGCACCAATACCCCGACCTCCTCCTCCTCCTC CTCTCCTTTCCTTCCTTCCTCCATCTCTGCCTTCCGTCCTTCCTCCACCC GCCTCGCCGTCACGGTCGAAGTCGTCACAGACGACGATTTGTCCTCCTCC CTGCGTCGTGGGAGGGGGAGGGAAGGAAGGCAGGCAGGAGGGGGGGAATG GAGAAAAGTTGACGATGAGGTGGAAGTATTATTTCCTGAGGCCTTTGCTC AACCGAAGGGCATCATTCACTTCGTGGGAGGGGCAGTGGTGGGCGCCTTT CCCCGAGCGGCATATGGGCCCTTGTTGGAGCGGTTAGCGAGGCAGGGGTA CTGTATCATCGCCACATCCCTCCCCTTCTCCCTCTTCGACCACGCGGCGG GCGCGCGTTTGCTGGCAGTGGCCTACGCGCGAGGAGAGAATTATGTCGAG GGGGTGTACGGGCCTCGGATTCGGCAGCAGCTCCCCGTCTTCGGCCTCGG CCACTCCCTTGGCGCCAAAATGCACGTCCTCCTCGGGTCCTCCCCTCCCT CCCTCCCTCCCTCCTCCTCCTCCTCCTCCCCCTCCCCCTACCGCAGCAAG CGTCGGGCGAATGTGTTGGTGGCTTTTAACAATTTTTCGGCTCAGGAATC AGTGCCCCTGCTGGACGAGATGAGGAACCTGGGTTTATCTATAGGGGGCA TGGGCCTAAGCAGCAAGCTGGAAGACGTTTCGCGCCTCATAACTTCCCTC TCCGCATTGGATCTATCCGGGGCCTCCTCGCCCAATTCGCGAAGAGAAAC TAATAGCGGTTTCGACCTCGCATCGAAAGGCCTCAATATGGCTATGAGCT TCCTCTCCTCCCTCCCAACCGATATCCCCTCCGACTTCACCCCCTCGCCC GACGAAACATGGGCCCTCCTCTCCTCTCCCCCTCCCTCGGCCCCTGCCTC CTCCCCCTTCTACAGCGTGCCCTCCAACCTCGTCGTCTCCTTCGACAAGG ACACAATCGATCAGTCTCCCCGACTCCTCTCTCTCCTTCAGCAGCGAGGG AGGGAAGGAGGAAGGGGGGAGGAAGGGTGGAGAGTGTCAGGCTGGCAGGA ACGCACTTGACGCCCAACACACCGCAGGGCGTGTTGGACGCCGAGGTTGA GGGCCGGGGGGAGGGAGGGCAGGTGCAGGATGCCTACGGTAGAAAATGGG TGGAGGAAGGGGGGGCGGGAGAAGCCGTAGAAGGAGCTGGAGGAGGAGAA GGAGCAATAGGAGGAGCAGCGGCGCAGGCAGTGGCACGAACGGCGAAGCG GGAGTTGGATGCGCTGGCAGCTGCTATTACAACCTTCCTGGACTCGGAGT TGGTGGTCGGCAGCCTGGGGCCAGGCGGTGACATGTCCTAGTAACGGAAT GAAACGGAAGAAGAGTGCAACGGAAAGGAGAGGACGGGAAGGAGCAACCG ACGTGAATGTGTGGATAGATAGGGACAATGAATGACAAGAAAATAAAATG TCACCATTTCGCTGGCTGGTGACGCAGCTGCGTGCTGCTGGAAGCTTACC CCATGGTATCTGCTTCTCTTCCTTCTTCGTTGATATATGGCTTATCGAGG AAATTTATTCTTCTGTCTCATGAAATCAATCGCAATCTTTATCTCTTGGA TGTCTCTACGAAGAATCATGCCCAAGCCCCTCCTTTCCCCTCTCTATTCC CCTCCTTCCCCGCCCTTGCCTTTCTTTCTTTGACCCGGGTCAGAGTGACT GCATATATATATATGTATATATGTATATTTATATTTATATATGTATTTAT GTATACACACCAAGTACACCTACACATACAAACACTGCCTACGTCTCTAT AACCTGGGAAATACCTTCCCCATCCAAGCTCTGGCTGCGTGAATGCTGCT GCTGCTGTGGCTGCTGCGGCTGCTGTGGCTGCTGCGGCTGCTGTGGCTGC TGTGGCTGCGGCTGCCCCACTAGCCCTCCAGGCTGCAACGTGTCGGCCTC GCCACCTACCCGTCTCGGTCGCCTCCTCAACATATATCTTGTGGGAGCAA CGGCACTTCCGTCGCCCCAAGCGACAGACCAGAGCGCTACAGCGACGGGT GAGCTATCCCTCTCTCTCCCCTTCCTCATCCACATCCTCCGCTTTTCTCC TCTCCCTTCCTCCTAGTTGGCGAGGAGGGCGGGACAACGCGATTTACCTT CTCAAAATGCAGGCGTCCAAGCAAATTATTAATAAGCGAGTAATTCACAT CGGCATCGTCCAAAGCATACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC TGTTCCTGCACCAAGGGCTGCATAGACACACCTCCCTCTTCTGCTGCTGC TGCTGCTGCTGCTGC back to topprotein sequence of NO01G05520.2 >NO01G05520.2-protein ID=NO01G05520.2-protein|Name=NO01G05520.2|organism=Nannochloropsis oceanica|type=polypeptide|length=457bp MCRVSYVLLHPTPSSTSPTRNTGALLPSALAWGRGAGGGAYGGTSSSSLY MAGRDTCFSHSLFLNPSSHQFVGTSSTAGRGIPRQRSTTMMRMRTNTPTS SSSSSPFLPSSISAFRPSSTRLAVTVEVVTDDDLSSSLRRGRGREGRQAG GGEWRKVDDEVEVLFPEAFAQPKGIIHFVGGAVVGAFPRAAYGPLLERLA RQGYCIIATSLPFSLFDHAAGARLLAVAYARGENYVEGVYGPRIRQQLPV FGLGHSLGAKMHVLLGSSPPSLPPSSSSSSPSPYRSKRRANVLVAFNNFS AQESVPLLDEMRNLGLSIGGMGLSSKLEDVSRLITSLSALDLSGASSPNS RRETNSGFDLASKGLNMAMSFLSSLPTDIPSDFTPSPDETWALLSSPPPS APASSPFYSVPSNLVVSFDKDTIDQSPRLLSLLQQRGREGGRGEEGWRVS GWQERT* back to topmRNA from alignment at chr1:1514728..1518709+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G05520.2 ID=NO01G05520.2|Name=NO01G05520.2|organism=Nannochloropsis oceanica|type=mRNA|length=3982bp|location=Sequence derived from alignment at chr1:1514728..1518709+ (Nannochloropsis oceanica) CATCAGAATCACAGGCCAGTAGCAAACCTGAGACTCGCATAACTAAGAGG
ACGACCACGCTCATGACTTCGACGGAGTCACAACGGCAAGGGTCAACATC
CCGCCTACACGCCGTGTCCTACCGCAGCTTTCGCACCCTTCTAATCGGTA
TGTACACACATATCTGGTTGCTTCCTTGGCCGAAAAAAAATGTGTCGTGT
CTCTTATGTCTTACTTCATCCCACCCCATCCTCCACCTCTCCAACCCGCA
ACACAGGAGCCCTCTTACCCTCCGCCCTGGCCTGGGGGCGTGGAGCCGGA
GGCGGCGCTTACGGTGGAACCAGTTCCTCGAGTCTGTATATGGCCGGTCG
TGACACCTGCTTCAGCCATTCCCTTTTCTTGAATCCGTCTTCACACCAAT
TCGTGGGAACTTCCTCCACAGGTGCGTGTGCGTGTGGGTATCGCGTTGTG
AGTGTGTGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTT
TTGGACCTATGAATCCTTTCTCTCTTGCAAAAAATCCCCTTACACCCTCC
ACTCAATTCGTATTCCCACCTTATCTCATTTTTACATTTTTTTCTCTTTT
TATCGCCTCTTTCTTTCCAAAACCTTCACCCGGCCAGCGGGCCGCGGTAT
TCCCCGACAGCGGTCCACAACCATGATGCGCATGCGCACCAATACCCCGA
CCTCCTCCTCCTCCTCCTCTCCTTTCCTTCCTTCCTCCATCTCTGCCTTC
CGTCCTTCCTCCACCCGCCTCGCCGTCACGGTCGAAGTCGTCACAGACGA
CGATTTGTCCTCCTCCCTGCGTCGTGGGAGGGGGAGGGAAGGAAGGCAGG
CAGGAGGGGGGGAATGGAGAAAAGTTGACGATGAGGTGGAAGTATTATTT
CCTGAGGCCTTTGCTCAACCGAAGGGCATCATTCACTTCGTGGGAGGGGC
AGTGGTGGGCGCCTTTCCCCGAGCGGCATATGGGCCCTTGTTGGAGCGGT
TAGCGAGGCAGGTAGGGAAGGAGGCGAGGAAGGGAAGGAGGGAGGGAAGG
AGGGAGGTAAGGATCGAGTGCACAGGCTTATTCCTATTAATCATGCTTTG
CTCTGGCTCGTATTTCTATGATGGAGATGCCACGAATGAGGCTTGAGGCT
CACCGTCCCCCCTCCCTCGCTCCCTTCCTCCCTCCCTCCCTATTCCGATT
AGGGGTACTGTATCATCGCCACATCCCTCCCCTTCTCCCTCTTCGACCAC
GCGGCGGGCGCGCGTTTGCTGGCAGTGGCCTACGCGCGAGGAGAGAATTA
TGTCGAGGGGGTGTACGGGCCTCGGATTCGGCAGCAGGTGAGGGAGGGAG
AGAGGGAGGGAGGGAGGGATGTCGCCTCAGATGCCAATCTTATGGAGCTG
TTACGCTCCCTCCGCATTTGTCCCCCCTCTCTTCACCTTTTCCTCTCTCC
CTCATTCCCTCCCCCTCCTATTCCTGCAGCTCCCCGTCTTCGGCCTCGGC
CACTCCCTTGGCGCCAAAATGCACGTCCTCCTCGGGTCCTCCCCTCCCTC
CCTCCCTCCCTCCTCCTCCTCCTCCTCCCCCTCCCCCTACCGCAGCAAGC
GTCGGGCGAATGTGTTGGTGGCTTTTAACAATTTTTCGGCTCAGGAATCA
GTGCCCCTGCTGGACGAGATGAGGAACCTGGGTTTATCTATAGGGGGCAT
GGGCCTAAGCAGCAAGGTAGGGCGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAAAGAGAAATATGAAGTAGGACCTAAAGGCAGGAATGAATTG
TACCCCCCCCCCCCTTTTGGCTACTCTGGCGCGTCCTCTTCCAACACACA
GCCTTTTACCCTTCTGCTGATCCCGCCCTCCCTCCCGCCCTCCCTTCCTC
CCTCCCCCGGCCCCTCCCTTCCTTGTAGCTGGAAGACGTTTCGCGCCTCA
TAACTTCCCTCTCCGCATTGGATCTATCCGGGGCCTCCTCGCCCAATTCG
CGAAGAGAAACTAATAGCGGTTTCGACCTCGCATCGAAAGGTGAGAGAGA
GTAGAGGGCGAGAGGGAGGGAGGGAGGGAGGAAGAGAGGGAGGGAGGAAA
GGAAATATCACCGTCATCTTGGGATTCAGCTGCTGTTTTTTTTAAACCAC
ACACATGAATATACATAACTGACCTCTGGGTTGAAAAAAAGGGAAGCTCC
AGGCTAGCCAAATCACCTTTCATGTCGTTGCTCAACCCCCCACCAACCCT
CCCTCCCTCCTTTCCTCCCTCCCCCCCACCCTCCCCCACCAGGCCTCAAT
ATGGCTATGAGCTTCCTCTCCTCCCTCCCAACCGATATCCCCTCCGACTT
CACCCCCTCGCCCGACGAAACATGGGCCCTCCTCTCCTCTCCCCCTCCCT
CGGCCCCTGCCTCCTCCCCCTTCTACAGCGTGCCCTCCAACCTCGTCGTC
TCCTTCGACAAGGACACAATCGATCAGTCTCCCCGACTCCTCTCTCTCCT
TCAGCAGCGAGGGAGGGAAGGAGGAAGGGGGGAGGAAGGGTGGAGAGTGT
CAGGCTGGCAGGAACGCACTTGACGCCCAACACACCGCAGGGCGTGTTGG
ACGCCGAGGTTGAGGGCCGGGGGGAGGGAGGGCAGGTGCAGGATGCCTAC
GGTAGAAAATGGGTGGAGGAAGGGGGGGCGGGAGAAGCCGTAGAAGGAGC
TGGAGGAGGAGAAGGAGCAATAGGAGGAGCAGCGGCGCAGGCAGTGGCAC
GAACGGCGAAGCGGGAGTTGGATGCGTAGGTCACTCGAGAGGGAGGAAAG
GAGGGAGGGAGGGAGGGAGGGAGGGGGGACAGGAGGGAGGGAGGGAGGGC
TGGGAGAGAAAAATATAAAATATTCATGTTCATCACCTTTTTCTCAAAAT
AATCCTTTCCAATATATATATATATATAGGCTGGCAGCTGCTATTACAAC
CTTCCTGGACTCGGAGTTGGTGGTCGGCAGCCTGGGGCCAGGCGGTGACA
TGTCCTAGTAACGGAATGAAACGGAAGAAGAGTGCAACGGAAAGGAGAGG
ACGGGAAGGAGCAACCGACGTGAATGTGTGGATAGATAGGGACAATGAAT
GACAAGAAAATAAAATGTCACCATTTCGCTGGCTGGTGACGCAGCTGCGT
GCTGCTGGAAGCTTACCCCATGGTATCTGCTTCTCTTCCTTCTTCGTTGA
TATATGGCTTATCGAGGAAATTTATTCTTCTGTCTCATGAAATCAATCGC
AATCTTTATCTCTTGGATGTCTCTACGAAGAATCATGCCCAAGCCCCTCC
TTTCCCCTCTCTATTCCCCTCCTTCCCCGCCCTTGCCTTTCTTTCTTTGA
CCCGGGTCAGAGTGACTGCATATATATATATGTATATATGTATATTTATA
TTTATATATGTATTTATGTATACACACCAAGTACACCTACACATACAAAC
ACTGCCTACGTCTCTATAACCTGGGAAATACCTTCCCCATCCAAGCTCTG
GCTGCGTGAATGCTGCTGCTGCTGTGGCTGCTGCGGCTGCTGTGGCTGCT
GCGGCTGCTGTGGCTGCTGTGGCTGCGGCTGCCCCACTAGCCCTCCAGGC
TGCAACGTGTCGGCCTCGCCACCTACCCGTCTCGGTCGCCTCCTCAACAT
ATATCTTGTGGGAGCAACGGCACTTCCGTCGCCCCAAGCGACAGACCAGA
GCGCTACAGCGACGGGTGAGCTATCCCTCTCTCTCCCCTTCCTCATCCAC
ATCCTCCGCTTTTCTCCTCTCCCTTCCTCCTAGTTGGCGAGGAGGGCGGG
ACAACGCGATTTACCTTCTCAAAATGCAGGCGTCCAAGCAAATTATTAAT
AAGCGAGTAATTCACATCGGCATCGTCCAAAGCATACTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGTTCCTGCACCAAGGGCTGCATAGACACACCT
CCCTCTTCTGCTGCTGCTGCTGCTGCTGCTGC back to topCoding sequence (CDS) from alignment at chr1:1514728..1518709+ >NO01G05520.2 ID=NO01G05520.2|Name=NO01G05520.2|organism=Nannochloropsis oceanica|type=CDS|length=1371bp|location=Sequence derived from alignment at chr1:1514728..1518709+ (Nannochloropsis oceanica) ATGTGTCGTGTCTCTTATGTCTTACTTCATCCCACCCCATCCTCCACCTC TCCAACCCGCAACACAGGAGCCCTCTTACCCTCCGCCCTGGCCTGGGGGC GTGGAGCCGGAGGCGGCGCTTACGGTGGAACCAGTTCCTCGAGTCTGTAT ATGGCCGGTCGTGACACCTGCTTCAGCCATTCCCTTTTCTTGAATCCGTC TTCACACCAATTCGTGGGAACTTCCTCCACAGCGGGCCGCGGTATTCCCC GACAGCGGTCCACAACCATGATGCGCATGCGCACCAATACCCCGACCTCC TCCTCCTCCTCCTCTCCTTTCCTTCCTTCCTCCATCTCTGCCTTCCGTCC TTCCTCCACCCGCCTCGCCGTCACGGTCGAAGTCGTCACAGACGACGATT TGTCCTCCTCCCTGCGTCGTGGGAGGGGGAGGGAAGGAAGGCAGGCAGGA GGGGGGGAATGGAGAAAAGTTGACGATGAGGTGGAAGTATTATTTCCTGA GGCCTTTGCTCAACCGAAGGGCATCATTCACTTCGTGGGAGGGGCAGTGG TGGGCGCCTTTCCCCGAGCGGCATATGGGCCCTTGTTGGAGCGGTTAGCG AGGCAGGGGTACTGTATCATCGCCACATCCCTCCCCTTCTCCCTCTTCGA CCACGCGGCGGGCGCGCGTTTGCTGGCAGTGGCCTACGCGCGAGGAGAGA ATTATGTCGAGGGGGTGTACGGGCCTCGGATTCGGCAGCAGCTCCCCGTC TTCGGCCTCGGCCACTCCCTTGGCGCCAAAATGCACGTCCTCCTCGGGTC CTCCCCTCCCTCCCTCCCTCCCTCCTCCTCCTCCTCCTCCCCCTCCCCCT ACCGCAGCAAGCGTCGGGCGAATGTGTTGGTGGCTTTTAACAATTTTTCG GCTCAGGAATCAGTGCCCCTGCTGGACGAGATGAGGAACCTGGGTTTATC TATAGGGGGCATGGGCCTAAGCAGCAAGCTGGAAGACGTTTCGCGCCTCA TAACTTCCCTCTCCGCATTGGATCTATCCGGGGCCTCCTCGCCCAATTCG CGAAGAGAAACTAATAGCGGTTTCGACCTCGCATCGAAAGGCCTCAATAT GGCTATGAGCTTCCTCTCCTCCCTCCCAACCGATATCCCCTCCGACTTCA CCCCCTCGCCCGACGAAACATGGGCCCTCCTCTCCTCTCCCCCTCCCTCG GCCCCTGCCTCCTCCCCCTTCTACAGCGTGCCCTCCAACCTCGTCGTCTC CTTCGACAAGGACACAATCGATCAGTCTCCCCGACTCCTCTCTCTCCTTC AGCAGCGAGGGAGGGAAGGAGGAAGGGGGGAGGAAGGGTGGAGAGTGTCA GGCTGGCAGGAACGCACTTGA back to top
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