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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr1 | genome | chr1:860551..863237 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G03280.1 vs.
Match: EWM29263.1 (hydrolase [Nannochloropsis gaditana]) HSP 1 Score: 534.3 bits (1375), Expect = 4.400e-148 Identity = 295/533 (55.35%), Postives = 359/533 (67.35%), Query Frame = 0
Query: 41 MTRCT--LSLAAHFLTLASTTTAFVKPPLSPP--PLAILHATEPKRDIFTASIFEDKASDPLRQDGYWEELFMKGSSGAVPSEASRVSLFNESTTPSPEGGGVEVVSFDLDDTLWCGKTVISNANNALQAFLQTNYPAMVAEGQPAISALMWLLAKKHPDEFLEDPDDCNSIVRFTDLRKLALNVLAQKCGLPEPQAVAEAAFQAWHDARHDVDALFFPGALELLQFLKGRGVRLCAVTNGNCDIDQ----------------------------IAAF---------KGIFEFCINAEKVGARKRTGRPYAAAVKRAGVGEGVEGRWVHVGDDFTEDIVAAKHDLKLRTIWYHTAERKAKVEKEQAEAQNERAKKQGQREKEGPLISTHEIKGLAPGLSRLANMATASADRFFKDKGAVHVRSMETDDYLTHYIVKEFADAEVETLKEVGVVIEEWLSQGCRNGGEEDHVTESGEIAEAAGSGLGLDA-EGKEEGGEKLGRRGVEGTKFCIACRAVLPARAKFCSTCGEAQE 532
MTR L L A F+ L + AF++PP S P A LH+ EP RD++T S+FE+ + DPL Q+ YWE+LFM+GS+ S ++ E T P E GV+VVSFDLDDTLWCGKTVISNAN ALQAFLQ NYPAMV++ P +SALMW+LAKKHP+EFLEDP+D S+VRFTDLRKLAL LA+KC +PEPQAVAEAAFQAWHDARHDV LFFPGAL+LLQ LK RG+RLCA+TNGNCDI + A+F G+FEFCINAEKVGARKRTGRPY AA+++AGVGEGV RWVH+GDDF+EDI+AAK D KLRTIWYHTAERKAKVE+EQ A+ R + Q + K+ S + LS LA+ S + FFKDK AVHV +METDDYLTH+I KEF D EVE LKE+ +I+ W+ QG + ++ V +G ++ + ++A + KEE +KFCIACRA+LP RAKFCS CGE QE
Sbjct: 1 MTRSAPCLPLFAFFVLLVPSVAAFLRPPRSRSTRPRA-LHSREPARDLYTTSLFENPSEDPLLQEKYWEDLFMQGSAARGESPST------EGTGPE-EAVGVDVVSFDLDDTLWCGKTVISNANKALQAFLQANYPAMVSDELPTVSALMWVLAKKHPEEFLEDPEDSKSVVRFTDLRKLALTALAKKCDMPEPQAVAEAAFQAWHDARHDVQELFFPGALDLLQELKARGLRLCAITNGNCDISRIAAFEGECRRNARYVSPHLLLCENYISHTASFAPCPLSSYTSGVFEFCINAEKVGARKRTGRPYMAAIQQAGVGEGVGKRWVHIGDDFSEDILAAKSDFKLRTIWYHTAERKAKVEEEQLAAKRARLEAQEKESKDSSRTSAEDGAVGPLKLSSLASSFKTSTEPFFKDKAAVHVNTMETDDYLTHFITKEFVDGEVEDLKEIVPLIDNWVRQGKQRPPKKKAVGGTGSTSDTSSGVDCIEAPQDKEE------------SKFCIACRAILPVRAKFCSACGEKQE 513
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G03280.1 ID=NO01G03280.1|Name=NO01G03280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1989bp
CTGCCCTGCTGCTAATGGCCCTGTGATAATATGTACGGGGATGGGGTACT
CTAGGGGTGAGCCTGGCCGGCTGGCTGGCTGACTGCGGTACAACGATCTC
TGAGGCATGCAACATTTCTACGGCGGTAGCTGACTAGAATGTAGAGCGGC
ACCTCTGAGTGCAGATTGCGCGGTTGAGGCGGGGCGTTAAATTTGAAGTG
TGAAAGAGGCAAGGAACAAGGCCCATGCCCCAGCAGTCACTGTTGCTAAC
TGCGGATGATGCCAAGGGACAGTCAGCACACCCGATATCCTTACACCCCA
CTGTCCTCCCTAAGCACGCAAATTACATTATGTATTCTCCATTCGCACAC
AGGCAGTGAGGAGGGCCACATATCGATGACCCGGTGCACCCTTTCTCTTG
CCGCGCATTTCCTAACTCTTGCCTCGACCACAACTGCATTTGTCAAACCT
CCCCTCTCCCCTCCTCCCCTCGCCATACTGCACGCCACTGAGCCCAAGCG
GGACATCTTCACCGCCTCAATATTTGAGGATAAGGCTTCAGATCCGTTGC
GACAAGACGGGTATTGGGAAGAGTTGTTCATGAAGGGCAGCAGCGGCGCG
GTCCCCTCAGAGGCCTCTCGCGTTTCGCTCTTCAATGAGAGCACGACGCC
ATCCCCCGAGGGGGGGGGCGTGGAGGTGGTGAGCTTCGACCTGGACGACA
CCTTGTGGTGTGGTAAGACGGTAATTAGCAATGCTAACAATGCCTTGCAA
GCCTTCCTCCAAACCAACTACCCAGCCATGGTGGCCGAGGGTCAACCCGC
CATTTCGGCACTTATGTGGCTCCTGGCGAAAAAGCATCCAGATGAATTTT
TAGAGGACCCCGATGATTGCAATTCCATCGTTCGTTTCACTGACTTGAGG
AAGCTCGCTCTCAATGTGTTAGCGCAAAAATGTGGTTTGCCCGAGCCCCA
AGCAGTGGCAGAAGCGGCTTTTCAGGCGTGGCATGACGCGAGACATGACG
TGGACGCGTTGTTTTTCCCGGGTGCCTTGGAGTTGCTGCAGTTTCTGAAG
GGACGGGGGGTGAGATTGTGTGCAGTCACGAATGGGAATTGCGACATCGA
CCAGATTGCTGCCTTTAAAGGCATATTCGAATTCTGCATTAATGCCGAAA
AAGTTGGTGCTCGGAAAAGGACCGGCCGCCCGTACGCCGCCGCCGTCAAG
CGGGCAGGGGTCGGGGAAGGAGTGGAGGGACGATGGGTGCATGTCGGCGA
TGATTTTACGGAAGATATTGTGGCGGCGAAACATGATTTGAAATTGCGAA
CGATTTGGTATCACACGGCGGAGCGCAAGGCAAAGGTAGAGAAGGAGCAG
GCGGAGGCACAGAACGAACGAGCAAAGAAGCAGGGACAGCGCGAGAAAGA
GGGCCCTCTTATTTCCACACATGAAATAAAGGGATTGGCTCCTGGATTAT
CTCGTTTGGCTAATATGGCCACGGCTTCGGCGGATCGATTTTTCAAGGAT
AAAGGTGCGGTGCATGTCAGGAGCATGGAGACAGATGATTATTTGACACA
TTATATTGTGAAGGAATTTGCAGATGCGGAGGTAGAGACATTAAAAGAGG
TGGGGGTGGTGATTGAGGAGTGGTTGTCGCAAGGATGTCGAAATGGAGGG
GAAGAAGACCATGTAACGGAATCGGGAGAAATAGCCGAAGCGGCCGGTTC
AGGTTTAGGTCTTGATGCGGAGGGGAAGGAGGAGGGAGGGGAGAAACTCG
GTAGAAGAGGGGTGGAGGGCACTAAGTTTTGCATTGCGTGTCGGGCGGTG
CTGCCGGCGCGGGCAAAGTTCTGCTCGACGTGTGGGGAGGCACAAGAATG
AGTACATATGATGCGGTTGTGGAAGTACAATCCCTTTAAGGTAGAACAAG
AAAAAGGAGGAAGGAGAAAACTGAAGTGTAAAGAAAATTCAAAAAGGTGA
CGCATGCACCTCTTCTTTTTGTGAAGGGTCGCAATTTGA back to topprotein sequence of NO01G03280.1 >NO01G03280.1-protein ID=NO01G03280.1-protein|Name=NO01G03280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=532bp
MMPRDSQHTRYPYTPLSSLSTQITLCILHSHTGSEEGHISMTRCTLSLAA
HFLTLASTTTAFVKPPLSPPPLAILHATEPKRDIFTASIFEDKASDPLRQ
DGYWEELFMKGSSGAVPSEASRVSLFNESTTPSPEGGGVEVVSFDLDDTL
WCGKTVISNANNALQAFLQTNYPAMVAEGQPAISALMWLLAKKHPDEFLE
DPDDCNSIVRFTDLRKLALNVLAQKCGLPEPQAVAEAAFQAWHDARHDVD
ALFFPGALELLQFLKGRGVRLCAVTNGNCDIDQIAAFKGIFEFCINAEKV
GARKRTGRPYAAAVKRAGVGEGVEGRWVHVGDDFTEDIVAAKHDLKLRTI
WYHTAERKAKVEKEQAEAQNERAKKQGQREKEGPLISTHEIKGLAPGLSR
LANMATASADRFFKDKGAVHVRSMETDDYLTHYIVKEFADAEVETLKEVG
VVIEEWLSQGCRNGGEEDHVTESGEIAEAAGSGLGLDAEGKEEGGEKLGR
RGVEGTKFCIACRAVLPARAKFCSTCGEAQE* back to topmRNA from alignment at chr1:860551..863237- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G03280.1 ID=NO01G03280.1|Name=NO01G03280.1|organism=Nannochloropsis oceanica|type=mRNA|length=2687bp|location=Sequence derived from alignment at chr1:860551..863237- (Nannochloropsis oceanica)
CTGCCCTGCTGCTAATGGCCCTGTGATAATATGTACGGGGATGGGGTACT
CTAGGGGTGAGCCTGGCCGGCTGGCTGGCTGACTGCGGTACAACGATCTC
TGAGGCATGCAACATTTCTACGGCGGTAGCTGACTAGAATGTAGAGCGGC
ACCTCTGAGTGCAGATTGCGCGGTTGAGGCGGGGCGTTAAATTTGAAGTG
TGAAAGAGGCAAGGAACAAGGCCCATGCCCCAGCAGTCACTGTTGCTAAC
TGCGGATGATGCCAAGGGACAGTCAGCACACCCGATATCCTTACACCCCA
CTGTCCTCCCTAAGCACGCAAATTACATTATGTATTCTCCATTCGCACAC
AGGCAGTGAGGAGGGCCACATATCGATGACCCGGTGCACCCTTTCTCTTG
CCGCGCATTTCCTAACTCTTGCCTCGACCACAACTGCATTTGTCAAACCT
CCCCTCTCCCCTCCTCCCCTCGCCATACTGCACGCCACTGAGCCCAAGCG
GGACATCTTCACCGCCTCAATATTTGAGGATAAGGCTTCAGATCCGTTGC
GACAAGACGGGTATTGGGAAGAGTTGTTCATGAAGGGCAGCAGCGGCGCG
GTCCCCTCAGAGGCCTCTCGCGTTTCGCTCTTCAATGAGAGCACGACGCC
ATCCCCCGAGGGGGGGGGCGTGGAGGTGGTGAGCTTCGACCTGGACGACA
CCTTGTGGTGTGGTAAGACGGTAATTAGCAATGCTAACAAGTACGTTTGG
GGATGGGTTGGTACGTGTGGCGAGTTTTCTCGAGATGGGAGACGCCACCT
CCTCCTACTCCTATCCGCCACAAATCCATTCCATTCCACGCGCAAATTGA
AGAGATGTGCGCTTTTTTTTTTGCCACATCCGTAATCGGTCATCTAATAC
ACACCACACTCTGGCCCCCTCACATCATTTGCCAAAATAGTGCCTTGCAA
GCCTTCCTCCAAACCAACTACCCAGCCATGGTGGCCGAGGGTCAACCCGC
CATTTCGGCACTTATGTGGCTCCTGGCGAAAAAGCATCCAGATGAATTTT
TAGAGGACCCCGATGATTGCAATTCCATCGTTCGTTTCACTGACTTGAGG
AAGCTCGCTCTCAATGTGTTAGCGCAAAAATGTGGTTTGCCCGAGCCCCA
AGCAGTGGCAGAAGCGGCTTTTCAGGCGTGGCATGACGCGAGGTAAAGAA
GGAGTGATAGAGGAAAGAAAAGAGGAAGAGAGGGAGATCTGCATGAACGA
TTAGTTCTTTTGACAACGTTTCCCTCTCATTCCCTGCGACTTATGCCACA
GACATGACGTGGACGCGTTGTTTTTCCCGGGTGCCTTGGAGTTGCTGCAG
TTTCTGAAGGGACGGGGGGTGAGATTGTGTGCAGTCACGAATGGGAATTG
CGACATCGACCAGATTGCTGCCTTTAAAGGTACACAGTGTTACTGCTCCT
ACCGCTGCTGCTGCCGCTGCTCTTTTTATGCAGAATCTGTAAACCTTTAC
TTCTCTCTTTTCTGCATCACTGGTGCTCTGTGGTCTCAGTGGCTGGAATC
TCGCTTGTCGTCTGTATGAGGGCGTTCTCCGCCTCCTTTCTTCTAGTCTT
CTTCTACCCTTTCTTCTCCACCCACGCATACCTTTATGCCCTCACGCCCC
CCATTTCCTCACCCACACAGGCATATTCGAATTCTGCATTAATGCCGAAA
AAGTTGGTGCTCGGAAAAGGACCGGCCGCCCGTACGCCGCCGCCGTCAAG
CGGGCAGGGGTCGGGGAAGGAGTGGAGGGACGATGGGTGCATGTCGGCGA
TGATTTTACGGAAGATATTGTGGTAGGGAGGGAAGGAAGGAAGGAAGGAG
GGAGGGAGGGAGGGAGGATGTTTTTCTTGGGCAGCATAGGTGGTGGATCC
TTCCGGCTTCATTTCAATGGTCGCTTACGCAAATCCCACCTACCCGTCCT
CCTCCTCATCCTCTCTTCAGGCGGCGAAACATGATTTGAAATTGCGAACG
ATTTGGTATCACACGGCGGAGCGCAAGGCAAAGGTAGAGAAGGAGCAGGC
GGAGGCACAGAACGAACGAGCAAAGAAGCAGGGACAGCGCGAGAAAGAGG
GCCCTCTTATTTCCACACATGAAATAAAGGGATTGGCTCCTGGATTATCT
CGTTTGGCTAATATGGCCACGGCTTCGGCGGATCGATTTTTCAAGGATAA
AGGTGCGGTGCATGTCAGGAGCATGGAGACAGATGATTATTTGACACATT
ATATTGTGAAGGAATTTGCAGATGCGGAGGTAGAGACATTAAAAGAGGTG
GGGGTGGTGATTGAGGAGTGGTTGTCGCAAGGATGTCGAAATGGAGGGGA
AGAAGACCATGTAACGGAATCGGGAGAAATAGCCGAAGCGGCCGGTTCAG
GTTTAGGTCTTGATGCGGAGGGGAAGGAGGAGGGAGGGGAGAAACTCGGT
AGAAGAGGGGTGGAGGGCACTAAGTTTTGCATTGCGTGTCGGGCGGTGCT
GCCGGCGCGGGCAAAGTTCTGCTCGACGTGTGGGGAGGCACAAGAATGAG
TACATATGATGCGGTTGTGGAAGTACAATCCCTTTAAGGTAGAACAAGAA
AAAGGAGGAAGGAGAAAACTGAAGTGTAAAGAAAATTCAAAAAGGTGACG
CATGCACCTCTTCTTTTTGTGAAGGGTCGCAATTTGA back to topCoding sequence (CDS) from alignment at chr1:860551..863237- >NO01G03280.1 ID=NO01G03280.1|Name=NO01G03280.1|organism=Nannochloropsis oceanica|type=CDS|length=1596bp|location=Sequence derived from alignment at chr1:860551..863237- (Nannochloropsis oceanica)
ATGATGCCAAGGGACAGTCAGCACACCCGATATCCTTACACCCCACTGTC
CTCCCTAAGCACGCAAATTACATTATGTATTCTCCATTCGCACACAGGCA
GTGAGGAGGGCCACATATCGATGACCCGGTGCACCCTTTCTCTTGCCGCG
CATTTCCTAACTCTTGCCTCGACCACAACTGCATTTGTCAAACCTCCCCT
CTCCCCTCCTCCCCTCGCCATACTGCACGCCACTGAGCCCAAGCGGGACA
TCTTCACCGCCTCAATATTTGAGGATAAGGCTTCAGATCCGTTGCGACAA
GACGGGTATTGGGAAGAGTTGTTCATGAAGGGCAGCAGCGGCGCGGTCCC
CTCAGAGGCCTCTCGCGTTTCGCTCTTCAATGAGAGCACGACGCCATCCC
CCGAGGGGGGGGGCGTGGAGGTGGTGAGCTTCGACCTGGACGACACCTTG
TGGTGTGGTAAGACGGTAATTAGCAATGCTAACAATGCCTTGCAAGCCTT
CCTCCAAACCAACTACCCAGCCATGGTGGCCGAGGGTCAACCCGCCATTT
CGGCACTTATGTGGCTCCTGGCGAAAAAGCATCCAGATGAATTTTTAGAG
GACCCCGATGATTGCAATTCCATCGTTCGTTTCACTGACTTGAGGAAGCT
CGCTCTCAATGTGTTAGCGCAAAAATGTGGTTTGCCCGAGCCCCAAGCAG
TGGCAGAAGCGGCTTTTCAGGCGTGGCATGACGCGAGACATGACGTGGAC
GCGTTGTTTTTCCCGGGTGCCTTGGAGTTGCTGCAGTTTCTGAAGGGACG
GGGGGTGAGATTGTGTGCAGTCACGAATGGGAATTGCGACATCGACCAGA
TTGCTGCCTTTAAAGGCATATTCGAATTCTGCATTAATGCCGAAAAAGTT
GGTGCTCGGAAAAGGACCGGCCGCCCGTACGCCGCCGCCGTCAAGCGGGC
AGGGGTCGGGGAAGGAGTGGAGGGACGATGGGTGCATGTCGGCGATGATT
TTACGGAAGATATTGTGGCGGCGAAACATGATTTGAAATTGCGAACGATT
TGGTATCACACGGCGGAGCGCAAGGCAAAGGTAGAGAAGGAGCAGGCGGA
GGCACAGAACGAACGAGCAAAGAAGCAGGGACAGCGCGAGAAAGAGGGCC
CTCTTATTTCCACACATGAAATAAAGGGATTGGCTCCTGGATTATCTCGT
TTGGCTAATATGGCCACGGCTTCGGCGGATCGATTTTTCAAGGATAAAGG
TGCGGTGCATGTCAGGAGCATGGAGACAGATGATTATTTGACACATTATA
TTGTGAAGGAATTTGCAGATGCGGAGGTAGAGACATTAAAAGAGGTGGGG
GTGGTGATTGAGGAGTGGTTGTCGCAAGGATGTCGAAATGGAGGGGAAGA
AGACCATGTAACGGAATCGGGAGAAATAGCCGAAGCGGCCGGTTCAGGTT
TAGGTCTTGATGCGGAGGGGAAGGAGGAGGGAGGGGAGAAACTCGGTAGA
AGAGGGGTGGAGGGCACTAAGTTTTGCATTGCGTGTCGGGCGGTGCTGCC
GGCGCGGGCAAAGTTCTGCTCGACGTGTGGGGAGGCACAAGAATGA back to top
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