NO01G00500.1, NO01G00500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00500.1
Unique NameNO01G00500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1164
Alignment locationchr1:132033..133468 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:132033..133468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G00500.1 vs.
Match: XP_005855962.1 (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526]; EKU20405.1 short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 508.4 bits (1308), Expect = 1.900e-140
Identity = 260/360 (72.22%), Postives = 304/360 (84.44%), Query Frame = 0 
Query:    1 MAMPLVLTLFFGVLLAVGIALVVLLILPFVIYLISRKRYPTLPSQASNVTLGGIVVTGASTGIGRHAALYLAQRGFIVFAGVRKPADGEALLLAHQQEKKDH---STSQTSATTSKGGVLHPLILDVTKAAQITAALRTVKEELARRGNLPFLGLVNNAGVTGGADPVEYLPLDYNRYAFEVNYHGPLAVTKAFLPLLRQEPQGRIVNVSSMAGTVTRPLGATYSCTKFALEALSDTLRMELGHLGVSVSVIQPGYIHSEIFGKATEQHDQRMQELPEECAMLYGHLYALKKVDNLVAKASDPVVCSKAIHHALTSAYPRTRYQPGNVNGTPASLLSWGIWILNDRLLDRVITPSPAQKG 358
            MA   +++  +GVLLA GI L+ +L+LP V+YLISRK YPTL + +S  TLGG++VTGASTGIGRHAA YLA++GF+VFAGVRKPADGEALL A+  E+      S S+   + +K GVLH LILD+TK  QI AA+R+V+EEL+RRG LPFLGLVNNAGVTGGADPVE+LPL++NR  FEVN++GPLAVT+AFLPLLRQ PQGRI+NVSSMAG VTRPLGATYSCTKFALEALSDTLR+ELGHLGVSVSVIQPGYI SEIFGKA EQH  RMQELPEEC+ LYGHLY + K + L+AKASDP+VCS+AIHHALTS YP+TRY  GNVNGTPA  L WGIW+LNDRL+DR+ITP P +KG
Sbjct:    1 MASVDLISGLYGVLLAFGIMLLAVLLLPLVVYLISRKPYPTLKTLSSTKTLGGVLVTGASTGIGRHAAFYLARQGFLVFAGVRKPADGEALLKAYLDEESKQTSKSRSRGKVSPAKQGVLHYLILDITKPFQIAAAVRSVQEELSRRGGLPFLGLVNNAGVTGGADPVEFLPLEHNRNTFEVNFYGPLAVTQAFLPLLRQAPQGRIINVSSMAGIVTRPLGATYSCTKFALEALSDTLRVELGHLGVSVSVIQPGYIRSEIFGKADEQHQHRMQELPEECSALYGHLYTVDKTNALIAKASDPIVCSRAIHHALTSPYPKTRYLVGNVNGTPAYWLGWGIWLLNDRLMDRMITP-PFKKG 359
The following BLAST results are available for this feature:
BLAST of NO01G00500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855962.11.900e-14072.22short-chain dehydrogenase reductase sdr [Nannochlo... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00500NO01G00500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00500.1NO01G00500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00500.1.cds1NO01G00500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00500.1.cds2NO01G00500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00500.1 ID=NO01G00500.1|Name=NO01G00500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1164bp
ATGGCCATGCCACTAGTTCTCACCCTCTTCTTCGGGGTACTCCTGGCCGT
GGGTATCGCATTGGTGGTCCTCCTCATCCTCCCATTCGTCATCTATCTCA
TAAGCCGCAAGCGCTACCCCACCCTTCCTTCTCAGGCGTCTAATGTCACG
CTGGGCGGCATAGTGGTCACCGGTGCCTCGACAGGTATAGGAAGACATGC
AGCCTTGTACCTGGCCCAACGAGGGTTTATTGTCTTTGCCGGCGTGCGCA
AGCCTGCAGATGGAGAGGCACTCCTACTTGCACATCAACAAGAGAAAAAA
GATCATTCGACGAGCCAAACATCAGCCACAACGAGCAAAGGAGGTGTCCT
CCACCCACTCATCCTCGACGTGACCAAAGCTGCCCAAATCACTGCTGCCT
TGCGCACTGTAAAAGAGGAGCTGGCCCGCCGAGGTAATTTGCCGTTTCTG
GGACTTGTAAATAACGCAGGAGTAACTGGTGGGGCAGATCCCGTTGAGTA
CTTGCCGCTGGACTACAACAGATATGCGTTCGAAGTTAATTACCACGGGC
CTCTGGCAGTAACGAAAGCGTTTCTCCCTCTCCTCCGCCAAGAGCCCCAA
GGGCGGATTGTAAACGTGTCCAGCATGGCTGGGACGGTCACTCGTCCCTT
AGGCGCTACCTATTCCTGCACCAAATTCGCCTTGGAAGCCCTGAGTGATA
CTCTGCGGATGGAGCTCGGGCACCTAGGGGTCTCAGTCTCGGTGATTCAA
CCGGGCTATATCCACAGCGAGATATTTGGGAAAGCCACAGAGCAGCATGA
CCAGCGGATGCAAGAGCTGCCGGAGGAATGTGCGATGCTGTACGGCCATT
TGTATGCGCTCAAGAAGGTGGATAATTTGGTCGCTAAGGCCTCTGACCCA
GTTGTATGCTCGAAGGCCATCCACCATGCCTTGACCAGCGCGTACCCCCG
GACGAGATACCAGCCGGGAAACGTGAATGGCACGCCTGCATCCTTATTAA
GCTGGGGAATTTGGATATTGAACGACCGATTGCTGGATAGGGTGATAACA
CCGAGCCCGGCACAGAAAGGGGATGTCCAGATTGGTGTAGTGAAGAGAGA
CGGGGAGGACAAGGAGGAGGGAGGGGTGGAAGAGGGGAGGGAAGGGGGAA
ATGCGACGCAGTGA
back to top

protein sequence of NO01G00500.1

>NO01G00500.1-protein ID=NO01G00500.1-protein|Name=NO01G00500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MAMPLVLTLFFGVLLAVGIALVVLLILPFVIYLISRKRYPTLPSQASNVT
LGGIVVTGASTGIGRHAALYLAQRGFIVFAGVRKPADGEALLLAHQQEKK
DHSTSQTSATTSKGGVLHPLILDVTKAAQITAALRTVKEELARRGNLPFL
GLVNNAGVTGGADPVEYLPLDYNRYAFEVNYHGPLAVTKAFLPLLRQEPQ
GRIVNVSSMAGTVTRPLGATYSCTKFALEALSDTLRMELGHLGVSVSVIQ
PGYIHSEIFGKATEQHDQRMQELPEECAMLYGHLYALKKVDNLVAKASDP
VVCSKAIHHALTSAYPRTRYQPGNVNGTPASLLSWGIWILNDRLLDRVIT
PSPAQKGDVQIGVVKRDGEDKEEGGVEEGREGGNATQ*
back to top

mRNA from alignment at chr1:132033..133468+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00500.1 ID=NO01G00500.1|Name=NO01G00500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1436bp|location=Sequence derived from alignment at chr1:132033..133468+ (Nannochloropsis oceanica)
ATGGCCATGCCACTAGTTCTCACCCTCTTCTTCGGGGTACTCCTGGCCGT
GGGTATCGCATTGGTGGTCCTCCTCATCCTCCCATTCGTCATCTATCTCA
TAAGCCGCAAGCGCTACCCCACCCTTCCTTCTCAGGCGTCTAATGTCACG
CTGGGCGGCATAGTGGTCACCGGTGCCTCGACAGGTATAGGAAGACATGC
AGCCTTGTACCTGGCCCAACGAGGGTTTATTGTCTTTGCCGGCGTGCGCA
AGCCTGCAGATGGAGAGGCACTCCTACTTGCACATCAACAAGAGAAAAAA
GATCATTCGACGAGCCAAACATCAGCCACAACGAGCAAAGGAGGTGTCCT
CCACCCACTCATCCTCGACGTGACCAAAGCTGCCCAAATCACTGCTGCCT
TGCGCACTGTAAAAGAGGAGCTGGCCCGCCGAGGTAATTTGCCGTTTCTG
GGACTTGTAAATAACGCAGGAGTAACTGGTGGGGCAGATCCCGTTGAGTA
CTTGCCGCTGGACTACAACAGATATGCGTTCGAAGTTAATTACCACGGGC
CTCTGGCAGTAACGAAAGCGTTTCTCCCTCTCCTCCGCCAAGAGCCCCAA
GGGCGGATTGTAAACGTGTCCAGCATGGCTGGGACGGTCACTCGTCCCTT
AGGCGCTACCTATTCCTGCACCAAATTCGCCTTGGAAGCCCTGAGTGATA
CTCTGCGGATGGAGCTCGGGCACCTAGGGGTCTCAGTCTCGGTGATTCAA
CCGGGCTATATCCACAGCGAGATATTTGGGAAAGCCACAGAGCAGCATGA
CCAGCGGATGCAAGAGCTGCCGGAGGAATGTGCGATGCTGTACGGCCATT
TGTATGCGCTCAAGAAGGTGGATAATTTGGTCGCTAAGGCCTCTGACCCA
GTTGTATGCTCGAAGGCCATCCACCATGCCTTGACCAGCGCGTACCCCCG
GGTATGATTTTGAGGGAAAGGAAGGGAAGGGAGGGGGAGCAAGCGAAATG
GGTGTCGATCATTAAGTGGCTGAAACTGTTGTGCAACCCATCCCATTTTT
GATTTTGGGGTGGGTTTGATTCGATTCTTCCTTTTCATGGATGTCCGTTT
GCCTCGCCTACCGTATAAATACAGCAGTCACTCAAAGAGAGTGACCCTTC
ACGAAAACTCACCCGCTCTCTTCCTCCTTTCCCCCACCTTCCCGCCTTCC
TTCATTCATTCCCTGTATAAAAGACGAGATACCAGCCGGGAAACGTGAAT
GGCACGCCTGCATCCTTATTAAGCTGGGGAATTTGGATATTGAACGACCG
ATTGCTGGATAGGGTGATAACACCGAGCCCGGCACAGAAAGGGGATGTCC
AGATTGGTGTAGTGAAGAGAGACGGGGAGGACAAGGAGGAGGGAGGGGTG
GAAGAGGGGAGGGAAGGGGGAAATGCGACGCAGTGA
back to top

Coding sequence (CDS) from alignment at chr1:132033..133468+

>NO01G00500.1 ID=NO01G00500.1|Name=NO01G00500.1|organism=Nannochloropsis oceanica|type=CDS|length=1164bp|location=Sequence derived from alignment at chr1:132033..133468+ (Nannochloropsis oceanica)
ATGGCCATGCCACTAGTTCTCACCCTCTTCTTCGGGGTACTCCTGGCCGT
GGGTATCGCATTGGTGGTCCTCCTCATCCTCCCATTCGTCATCTATCTCA
TAAGCCGCAAGCGCTACCCCACCCTTCCTTCTCAGGCGTCTAATGTCACG
CTGGGCGGCATAGTGGTCACCGGTGCCTCGACAGGTATAGGAAGACATGC
AGCCTTGTACCTGGCCCAACGAGGGTTTATTGTCTTTGCCGGCGTGCGCA
AGCCTGCAGATGGAGAGGCACTCCTACTTGCACATCAACAAGAGAAAAAA
GATCATTCGACGAGCCAAACATCAGCCACAACGAGCAAAGGAGGTGTCCT
CCACCCACTCATCCTCGACGTGACCAAAGCTGCCCAAATCACTGCTGCCT
TGCGCACTGTAAAAGAGGAGCTGGCCCGCCGAGGTAATTTGCCGTTTCTG
GGACTTGTAAATAACGCAGGAGTAACTGGTGGGGCAGATCCCGTTGAGTA
CTTGCCGCTGGACTACAACAGATATGCGTTCGAAGTTAATTACCACGGGC
CTCTGGCAGTAACGAAAGCGTTTCTCCCTCTCCTCCGCCAAGAGCCCCAA
GGGCGGATTGTAAACGTGTCCAGCATGGCTGGGACGGTCACTCGTCCCTT
AGGCGCTACCTATTCCTGCACCAAATTCGCCTTGGAAGCCCTGAGTGATA
CTCTGCGGATGGAGCTCGGGCACCTAGGGGTCTCAGTCTCGGTGATTCAA
CCGGGCTATATCCACAGCGAGATATTTGGGAAAGCCACAGAGCAGCATGA
CCAGCGGATGCAAGAGCTGCCGGAGGAATGTGCGATGCTGTACGGCCATT
TGTATGCGCTCAAGAAGGTGGATAATTTGGTCGCTAAGGCCTCTGACCCA
GTTGTATGCTCGAAGGCCATCCACCATGCCTTGACCAGCGCGTACCCCCG
GACGAGATACCAGCCGGGAAACGTGAATGGCACGCCTGCATCCTTATTAA
GCTGGGGAATTTGGATATTGAACGACCGATTGCTGGATAGGGTGATAACA
CCGAGCCCGGCACAGAAAGGGGATGTCCAGATTGGTGTAGTGAAGAGAGA
CGGGGAGGACAAGGAGGAGGGAGGGGTGGAAGAGGGGAGGGAAGGGGGAA
ATGCGACGCAGTGA
back to top
Synonyms
Publications