jgi.p|Nanoce1779_2|574314, gene_840 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574314
Unique Namegene_840
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_2:549244..551202 -

Link to JBrowse

Properties
Property NameValue
TranscriptId574400
ProteinId574314
Product nameRab-GTPase-TBC domain-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:549244..551202 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL032ncniL032Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02510NO02G02510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574314mRNA_840-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574314mRNA_840Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|574314

>mRNA_840-protein ID=mRNA_840-protein|Name=jgi.p|Nanoce1779_2|574314|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp
MSEDARRNGRSTSMAQREKAIRDLIVQNPVPLEKLRALALAPGDGFCNNA
LRSVIWPKLLGLNRFESQPSFHDQVARNQWSDQIGRDVARSLWHYHMPHA
KKRKRGSRRRLLAKMINALMSKHPTLHYYQGFHDVLSVLVLVMTEDDDLC
FAVAERVALYYLGDYTRRPDFSVLTPLLELLLPLVEAADGDVGACLRACG
IHAYVCLPWVIAWWAHDCHNLEITARLFDAFLSGPPLFPLYLAAAMILEA
KTELFALEDKDFSAVHSFLSRLASRPDLPVETLIARAHRLLLSLPPAKLV
RLHGHPFLRDLARKKEVHALNFPHVEWYKKEAPPDWLLREDRRREEGRSV
RCKHTRQRRRQAYLAGVQMPSAAGVVGNEKKGALWSSASSPPSSTSLWVA
AAAVVGVAAVLFKLGEGDLMELWYNRMS*
back to top
Synonyms
Publications