jgi.p|Nanoce1779_2|370256, gene_3680 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|370256
Unique Namegene_3680
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_6:945643..948772 -

Link to JBrowse

Properties
Property NameValue
TranscriptId370342
ProteinId370256
Product namehypothetical protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:945643..948772 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015031protein transport
GO:0007264small GTPase mediated signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0005515protein binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL083ncniL083Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03460NO08G03460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|370256mRNA_3680-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|370256mRNA_3680Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|370256

>mRNA_3680-protein ID=mRNA_3680-protein|Name=jgi.p|Nanoce1779_2|370256|organism=Nannochloropsis oceanica|type=polypeptide|length=947bp
MELLPPPCLEVTEKILIVGGAAVGKTSFIRRFVDKPLAGLQYVPTIGVDV
IVYPLPACQATARNITDGDDDARPVHLHFWDVSHKELVASASHHALICTN
VSGIFLVLDVSNRESLAAVDAWQHLLARYVPAHVPRVLLAHKADLVNEAG
CCVNDKLLEAYKRAAGLTDWCWTVGHEYFGDYVANRSNKSRPVADAVQLL
VDHILLFRREGGGEEGERNGETSRRGGWRRNEGHVGALVGARSRQEGEDG
REKEGQGGGGDRGEEETEEEEDLDADYGEGPREGLPSAMQVLRYLRIDEE
EERVKRRGISSSSSPPSSAFPAFLPFSTRCAHHPRRLRRVISCYQPLQGW
LPSVDLEVLFDKSPATSATIQNLRQQQQQQQQQRRQQRQKENQSRPSSSY
KPDAGWRHLAGCLGRNEAESLLRPRPVGTFLLRRFDERSLRLSYRTQHSV
EHAPIIFTSEGRWTHIRSGSAGAAAPAGAGGGGGGGGGGGGGGGGGGGAF
STYSPSNTAPNTPRGSSSRNGGRERISSSPTSSSITISLPSSPSSSSSSS
SSSTSASSLLSLPVQKAQLVGHQLQLQAPFPLVPPSIRPKTILRGGRGGG
GGKAGSGALLQQQQVYLQQHLQLQQQQPQSFETLDELLKFFSKKAMHGLC
FRRVPWTCEYEVVEEEGEEEKQNAAEGGGGGEGGGGGEAAGSGNVLLGWF
QRRASHSTLPSNSKGEQPSSPQQQQQQQQQQQQQTASLPFVTVPTVEQVD
DVFKDLNRVLKEVWMYDEKEKKTRSKSGGRRRVVLGEYKREGEGVQRAAE
GEEVEQGALLGLCGHSHGRVLVALGLDSDAIESDGCSKGKEEEDKNEFMP
GMSSVDLVESIIALDIKFCELLRSINTLLFVAGASCPSFTSTASQSSPES
ASAAAAADVLSHEKAEVQKKAYLQALRALGQWRPLLETLRLRFEAE*
back to top
Synonyms
Publications