jgi.p|Nanoce1779_2|625250, gene_3200 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|625250
Unique Namegene_3200
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_7:901455..904349 +

Link to JBrowse

Properties
Property NameValue
TranscriptId625336
ProteinId625250
Product nameeukaryotic translation initiation factor 5 putative
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:901455..904349 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003743translation initiation factor activity
Vocabulary: Biological Process
TermDefinition
GO:0006446regulation of translational initiation
GO:0006413translational initiation
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL092ncniL092Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03920NO05G03920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|625250mRNA_3200-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|625250mRNA_3200Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|625250

>mRNA_3200-protein ID=mRNA_3200-protein|Name=jgi.p|Nanoce1779_2|625250|organism=Nannochloropsis oceanica|type=polypeptide|length=458bp
MPACIWWSAGLNPIEDANYRYKMPRILAKVEGRGNGIKTVVINMKDVASA
LHRMPAEVTKFFGTELGAQTTYREETERAVVNGAHSAPALQALLCRYIQG
FVLCPSCGLPETAYKIKGGVIYQKCDACGEKSMCDMSHKLTTFIINTHKK
ASKDGKSVKEAKEKKKKVRAKAEADAGEEDGDEDGEAGGGKEKEKKKKKK
KDKDDREKKKKKKEKKEKSSEAGSSDGDGNGNGLVNGSSSSKKSGGGSSS
DEDEDEEGEDGELVATMDNLAVEDATAFAAAVGRLEQFLSAHPEATAAQV
LDEVRMIATFSALPIEDRLFLFVQAAFGPDAAKQNMVGKHVKVLKGLILN
VDAEAYQRRLIGVIEHLCAVTHKETLLKMFPLLLKQLYDEEVVDEEVFLE
WAEEEGPTEFTRREVSEEMVEMLRGEAEKFVTWLKEAEESGSEEDEESEE
EEEDSED*
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Synonyms
Publications