jgi.p|Nanoce1779_2|548964, gene_1333 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|548964
Unique Namegene_1333
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_1:300428..304569 -

Link to JBrowse

Properties
Property NameValue
TranscriptId549050
ProteinId548964
Product nameSNF2 family N-terminal domain-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:300428..304569 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0004386helicase activity
GO:0003677DNA binding
GO:0005524ATP binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL000ncniL000Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01540NO03G01540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|548964mRNA_1333-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|548964mRNA_1333Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|548964

>mRNA_1333-protein ID=mRNA_1333-protein|Name=jgi.p|Nanoce1779_2|548964|organism=Nannochloropsis oceanica|type=polypeptide|length=838bp
MKAVVLDGFLGRVLRPHQREGVKFLWRCLTGRGNANRMGRGAILADDMGL
GKTLQTIAVIWLLTKQSPYAHRTGGSSSSSDVEKAVVVAPSSLLGQWAAE
VKKWLQVRLSFMVVDSAMGRALGKGDATEQVATFCTSSAQHSTVLFISYE
GYRIHAAALNKCQQIGLLVCDEAHRLKEGGGKTQAALAACPARARLSLTG
TPVQNDLEEFYTLVDFVNPGVLGALSSFRTHYIHPILKSRDPKAPLLTKQ
HGQQRTQEVMAVVSRFFLRRTAATVLKTLIPPKTSLVVMCRLTPVQRKLY
QEVTRLAMLPGVMGNDPSVSSALGLKMIDALRKIVNHPRFFSAEVLGEGG
GEGGKEGGTLSEAAIIKVLRMTKASLAAEEAALDKSSDGGGKKKRMSATE
KADAAAAAVDLPSGMSGKLAVLEELLSAIYFMTPDRVVICSSYTNTLAML
QQMCERQAWSFLRLDGSVSISQRQGLVEAFNRGAGGATRRADQPFVFLLS
TRAGGQGLNLVGGNRLVLFDSCFNPSADLQAQARVWRDGQTKPCVLYRLL
STGTMEEKVFQRQISKRELHSTLVEDAGHDVRNFSPDELRRLFVLSPAHV
RCETYDLLRQGRREGGGGGGGKKTRWKDYRGAEDISDACLKSVVEAGKEG
GKLVSFVHEDEDEEEEEKKEAGRRGGGEGGEEEEERGAASTLVCGAGVLK
EGEEEQGDEWREGRVDGKAVLAPAMAAILAAKGKRKVKIVEANGEENNEE
EEEEEEEEEEGEEGEEESTEDEWLGDTGAGGEGKKVERKEVEVNGSKMAV
IKHVTLEEEAIRNKDSGKKKEEEGEGEEEEWDALMNM*
back to top
Synonyms
Publications