jgi.p|Nanoce1779_2|608041, mRNA_9082 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|608041
Unique NamemRNA_9082
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length541
Alignment locationscaffold_40:80110..80650 +

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Properties
Property NameValue
TranscriptId608127
TrackFilteredModels2
ProteinId608041
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_40supercontigscaffold_40:80110..80650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608041gene_9082Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608041mRNA_9082-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9082CDS_9082Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9082 ID=mRNA_9082|Name=jgi.p|Nanoce1779_2|608041|organism=Nannochloropsis oceanica|type=mRNA|length=541bp
ACAGGTCACGCCCAGGAACACATCGAGCGGCAACAATGAGTGACAATGAA
GCGGACGCACTTTACGACAACCTTATGGACGACGAAGAGGACGATTTTAT
GGGTGAGGAGGAGCCCCTGGACCAAGATGAGGACGAGGAAGAGATAGGAG
GCGGGGGAGTGCAAGATGGTGCCGCGCCGCTGGGCCGAGACGGGGAGCCC
GTGGACATTCTCCCCAGCGATGGAGTCAACTCCAGCAAAGCAAATAAGAC
CAGGGTGACCACCCGCTTTTTGACCAAGTACGAACGTGCGCGCATCTTGG
GGACACGCGCGTTACAGATCAGTATGAATGCCCCCATCATGGTTAAGCCT
GGGAGTGAGACAGACCCTCTGAAAATCGCCATGTTGGAACTGCGGGCTCG
TAAAATTCCAATAATTATTCGTCGATATCTGCCCGATGGGAGCCATGAGG
ACTGGCGGATTGAGGAGCTGGAGATTCCGGGTTTGGAGATGTAAGGAAGG
GGAGGGAACAAGTGAGAGAGGAGGAGGAGGGGGAAAGGAGG
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protein sequence of jgi.p|Nanoce1779_2|608041

>mRNA_9082-protein ID=mRNA_9082-protein|Name=jgi.p|Nanoce1779_2|608041|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MSDNEADALYDNLMDDEEDDFMGEEEPLDQDEDEEEIGGGGVQDGAAPLG
RDGEPVDILPSDGVNSSKANKTRVTTRFLTKYERARILGTRALQISMNAP
IMVKPGSETDPLKIAMLELRARKIPIIIRRYLPDGSHEDWRIEELEIPGL
EM*
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mRNA from alignment at scaffold_40:80110..80650+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9082 ID=mRNA_9082|Name=jgi.p|Nanoce1779_2|608041|organism=Nannochloropsis oceanica|type=mRNA|length=541bp|location=Sequence derived from alignment at scaffold_40:80110..80650+ (Nannochloropsis oceanica)
ACAGGTCACGCCCAGGAACACATCGAGCGGCAACAATGAGTGACAATGAA
GCGGACGCACTTTACGACAACCTTATGGACGACGAAGAGGACGATTTTAT
GGGTGAGGAGGAGCCCCTGGACCAAGATGAGGACGAGGAAGAGATAGGAG
GCGGGGGAGTGCAAGATGGTGCCGCGCCGCTGGGCCGAGACGGGGAGCCC
GTGGACATTCTCCCCAGCGATGGAGTCAACTCCAGCAAAGCAAATAAGAC
CAGGGTGACCACCCGCTTTTTGACCAAGTACGAACGTGCGCGCATCTTGG
GGACACGCGCGTTACAGATCAGTATGAATGCCCCCATCATGGTTAAGCCT
GGGAGTGAGACAGACCCTCTGAAAATCGCCATGTTGGAACTGCGGGCTCG
TAAAATTCCAATAATTATTCGTCGATATCTGCCCGATGGGAGCCATGAGG
ACTGGCGGATTGAGGAGCTGGAGATTCCGGGTTTGGAGATGTAAGGAAGG
GGAGGGAACAAGTGAGAGAGGAGGAGGAGGGGGAAAGGAGG
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Coding sequence (CDS) from alignment at scaffold_40:80110..80650+

>mRNA_9082 ID=mRNA_9082|Name=jgi.p|Nanoce1779_2|608041|organism=Nannochloropsis oceanica|type=CDS|length=459bp|location=Sequence derived from alignment at scaffold_40:80110..80650+ (Nannochloropsis oceanica)
ATGAGTGACAATGAAGCGGACGCACTTTACGACAACCTTATGGACGACGA
AGAGGACGATTTTATGGGTGAGGAGGAGCCCCTGGACCAAGATGAGGACG
AGGAAGAGATAGGAGGCGGGGGAGTGCAAGATGGTGCCGCGCCGCTGGGC
CGAGACGGGGAGCCCGTGGACATTCTCCCCAGCGATGGAGTCAACTCCAG
CAAAGCAAATAAGACCAGGGTGACCACCCGCTTTTTGACCAAGTACGAAC
GTGCGCGCATCTTGGGGACACGCGCGTTACAGATCAGTATGAATGCCCCC
ATCATGGTTAAGCCTGGGAGTGAGACAGACCCTCTGAAAATCGCCATGTT
GGAACTGCGGGCTCGTAAAATTCCAATAATTATTCGTCGATATCTGCCCG
ATGGGAGCCATGAGGACTGGCGGATTGAGGAGCTGGAGATTCCGGGTTTG
GAGATGTAA
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Synonyms
Publications