jgi.p|Nanoce1779_2|608041, gene_9082 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|608041
Unique Name	gene_9082
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Alignment location	scaffold_40:80110..80650 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	608127
ProteinId	608041
Product name	RNA polymerase, subunit omega/K/RPB6
Portal id	Nanoce1779_2

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_40	supercontig	scaffold_40:80110..80650 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE164714	2022-03-15
GO annotation for N. oceanica CCMP1779 v2	2020-03-30
PRJNA285666	2019-07-03
PRJNA157867	2019-07-02
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0034062	5'-3' RNA polymerase activity
GO:0003677	DNA binding
GO:0003899	DNA-directed 5'-3' RNA polymerase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniL060	ncniL060	Nannochloropsis oceanica (N. oceanica CCMP1779)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO18G01530	NO18G01530	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|608041	mRNA_9082-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|608041	mRNA_9082	Nannochloropsis oceanica (N. oceanica CCMP1779)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of jgi.p|Nanoce1779_2|608041

>mRNA_9082-protein ID=mRNA_9082-protein|Name=jgi.p|Nanoce1779_2|608041|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MSDNEADALYDNLMDDEEDDFMGEEEPLDQDEDEEEIGGGGVQDGAAPLG
RDGEPVDILPSDGVNSSKANKTRVTTRFLTKYERARILGTRALQISMNAP
IMVKPGSETDPLKIAMLELRARKIPIIIRRYLPDGSHEDWRIEELEIPGL
EM*

Synonyms

Publications