NO18G01530, NO18G01530 (gene) Nannochloropsis oceanica

Overview
NameNO18G01530
Unique NameNO18G01530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length459
Alignment locationchr18:497252..497710 +

Link to JBrowse

Properties
Property NameValue
DescriptionDna-directed rna polymerases and iii subunit rpabc2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:497252..497710 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0003677DNA binding
GO:0016740transferase activity
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR036161RPB6/omega_like_sf
IPR006110Pol_omega/K/RPB6
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
Homology
[Close]
BLAST of NO18G01530 vs. NCBI_GenBank
Match: EWM23358.1 (dna-directed rna polymerases and iii subunit rpabc2 [Nannochloropsis gaditana])

HSP 1 Score: 191.4 bits (485), Expect = 2.000e-45
Identity = 119/152 (78.29%), Postives = 127/152 (83.55%), Query Frame = 0 
Query:    1 MSDNEADALYDNLMXXXXXXXXXXXXXXXXXXXXXXXXXXXVQDGAAPLGRDGEPVDILPSDGVNSSKANKTRVTTRFLTKYERARILGTRALQISMNAPIMVKPGSETDPLKIAMLELRARKIPIIIRRYLPDGSHEDWRIEELEIPGLEM 153
            MSDNEADALYDNLM          XXXXXXXXXXXXXXXXX      P   + EP+ ILP D  +S+KANK ++TTRFLTKYERARILGTRALQISMNAPIMVKPG+ETDPLKIAM+ELRARKIPIIIRRYLPDGSHEDWRIEELEIPGLEM
Sbjct:    1 MSDNEADALYDNLM----------XXXXXXXXXXXXXXXXXXXXXGLPDRDEKEPIAILPHDAADSTKANKVKITTRFLTKYERARILGTRALQISMNAPIMVKPGTETDPLKIAMMELRARKIPIIIRRYLPDGSHEDWRIEELEIPGLEM 142
[Close]
BLAST of NO18G01530 vs. NCBI_GenBank
Match: XP_022292968.1 (DNA-directed RNA polymerases I, II, and III subunit RPABC2-like [Crassostrea virginica])

HSP 1 Score: 136.0 bits (341), Expect = 1.000e-28
Identity = 65/96 (67.71%), Postives = 81/96 (84.38%), Query Frame = 0 
Query:   52 DGEPVDILPSDGVNSSKANKTRVTTRFLTKYERARILGTRALQISMNAPIMVKPGSETDPLKIAMLELRARKIPIIIRRYLPDGSHEDWRIEELEI 148
            DGEP+DILP+D  N   A + R+TT ++TKYERAR+LGTRALQI+M AP+MV+   ETDPL+IAM EL+ARKIPIIIRR+LPDGS EDW I+EL++
Sbjct:   31 DGEPIDILPADQANQPVAAQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRFLPDGSFEDWGIDELQM 126
[Close]
BLAST of NO18G01530 vs. NCBI_GenBank
Match: XP_011439150.1 (PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Crassostrea gigas] >EKC22908.1 DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Crassostrea gigas])

HSP 1 Score: 129.0 bits (323), Expect = 1.200e-26
Identity = 62/94 (65.96%), Postives = 77/94 (81.91%), Query Frame = 0 
Query:   52 DGEPVDILPSDGVNSSKANKTRVTTRFLTKYERARILGTRALQISMNAPIMVKPGSETDPLKIAMLELRARKIPIIIRRYLPDGSHEDWRIEEL 146
            DG+P+DILP+D    +   + R+TT ++TKYERAR+LGTRALQI+M AP+MV+   ETDPL IAM EL+ARKIPIIIRR+LPDGS EDW I+EL
Sbjct:   31 DGDPIDILPADQATQAVEPQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRFLPDGSFEDWGIDEL 124
[Close]
BLAST of NO18G01530 vs. NCBI_GenBank
Match: XP_012565800.1 (PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC2-like [Hydra vulgaris])

HSP 1 Score: 127.9 bits (320), Expect = 2.700e-26
Identity = 65/92 (70.65%), Postives = 77/92 (83.70%), Query Frame = 0 
Query:   56 VDILPSDGVNSSKANKTRVTTRFLTKYERARILGTRALQISMNAPIMVKPGSETDPLKIAMLELRARKIPIIIRRYLPDGSHEDWRIEELEI 148
            VDILPS    +S+  K RVTT ++TKYERAR+LGTRALQISMNAP+MV+   ETDPL+IAM EL+ RKIPIIIRR+LPDGS+EDW I+EL I
Sbjct:   38 VDILPS--TEASQQQKKRVTTPYMTKYERARVLGTRALQISMNAPVMVELEGETDPLQIAMKELKVRKIPIIIRRFLPDGSYEDWAIDELII 127
[Close]
BLAST of NO18G01530 vs. NCBI_GenBank
Match: XP_004347676.1 (RNA polymerase II core subunit [Capsaspora owczarzaki ATCC 30864] >KJE94257.1 RNA polymerase II core subunit [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 127.1 bits (318), Expect = 4.700e-26
Identity = 64/102 (62.75%), Postives = 80/102 (78.43%), Query Frame = 0 
Query:   52 DGEPVDILPSDGVN-----SSKANKTRVTTRFLTKYERARILGTRALQISMNAPIMVKPGSETDPLKIAMLELRARKIPIIIRRYLPDGSHEDWRIEELEIP 149
            D    +I+  DG++     +S   K RVT+ F+TKYERAR+LGTRALQISMNAPIMV+   ETDPL+IAM ELR +KIPIIIRR+LPDGS+EDW +++LEIP
Sbjct:   38 DAATFEIVDQDGLDAGDGVASGETKKRVTSPFMTKYERARVLGTRALQISMNAPIMVQRDGETDPLQIAMKELREKKIPIIIRRFLPDGSYEDWGVDQLEIP 139
[Close]
BLAST of NO18G01530 vs. NCBI_GenBank
Match: XP_020381812.1 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Rhincodon typus])

HSP 1 Score: 126.3 bits (316), Expect = 8.000e-26
Identity = 63/96 (65.62%), Postives = 80/96 (83.33%), Query Frame = 0 
Query:   52 DGEPVDILPSDGVNSSKANKTRVTTRFLTKYERARILGTRALQISMNAPIMVKPGSETDPLKIAMLELRARKIPIIIRRYLPDGSHEDWRIEELEI 148
            D E V+ILP+   +  +AN+ R+TT ++TKYERAR+LGTRALQI+M AP+MV+   ETDPL+IAM EL+ARKIPIIIRRYLPDGS+EDW ++EL I
Sbjct:   11 DRENVEILPA--ADGQQANQKRITTSYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDGSYEDWGVDELII 104
[Close]
BLAST of NO18G01530 vs. NCBI_GenBank
Match: XP_005849104.1 (hypothetical protein CHLNCDRAFT_21734 [Chlorella variabilis] >EFN57002.1 hypothetical protein CHLNCDRAFT_21734 [Chlorella variabilis])

HSP 1 Score: 125.9 bits (315), Expect = 1.000e-25
Identity = 64/104 (61.54%), Postives = 79/104 (75.96%), Query Frame = 0 
Query:   46 AAPLGRDGEPVDIL-PSDGVNSSKANKTRVTTRFLTKYERARILGTRALQISMNAPIMVKPGSETDPLKIAMLELRARKIPIIIRRYLPDGSHEDWRIEELEIP 149
            A  LG   + V+IL    G   ++A + R+TTR+LTKYE+AR+LGTRALQISMNAP+MV+ G+ETDPL+IA  ELR +KIP IIRRYLPD S EDW + EL IP
Sbjct:   11 AVVLGAGQDQVEILEQGPGQQQAQAERPRITTRYLTKYEKARVLGTRALQISMNAPVMVEVGTETDPLEIAYKELREKKIPFIIRRYLPDNSFEDWSLAELIIP 114
[Close]
BLAST of NO18G01530 vs. NCBI_GenBank
Match: KDQ63314.1 (hypothetical protein JAAARDRAFT_53539 [Jaapia argillacea MUCL 33604])

HSP 1 Score: 125.6 bits (314), Expect = 1.400e-25
Identity = 64/98 (65.31%), Postives = 75/98 (76.53%), Query Frame = 0 
Query:   50 GRDGEPVDILPSDGV--NSSKANKTRVTTRFLTKYERARILGTRALQISMNAPIMVKPGSETDPLKIAMLELRARKIPIIIRRYLPDGSHEDWRIEEL 146
            G+  +P    P  G+  N  +ANKTRVTT +LTKYERARILGTRALQISMNAP++V    ETD L+IA+ EL ARKIP+IIRRYLPDGS EDW + EL
Sbjct:   77 GQGAQPEASAPQGGILQNERQANKTRVTTPYLTKYERARILGTRALQISMNAPVLVPLDGETDALQIALKELAARKIPLIIRRYLPDGSFEDWSVSEL 174
[Close]
BLAST of NO18G01530 vs. NCBI_GenBank
Match: XP_013403508.1 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Lingula anatina])

HSP 1 Score: 125.6 bits (314), Expect = 1.400e-25
Identity = 63/96 (65.62%), Postives = 75/96 (78.12%), Query Frame = 0 
Query:   52 DGEPVDILPSDGVNSSKANKTRVTTRFLTKYERARILGTRALQISMNAPIMVKPGSETDPLKIAMLELRARKIPIIIRRYLPDGSHEDWRIEELEI 148
            +GE VD+LP+         K RVTT ++TKYERAR+LGTRALQI+M AP+MV+   ETDPL IAM EL+ARKIPIIIRRYLPDG+ EDW I+EL I
Sbjct:   33 EGEQVDVLPASDGGQKVEPKERVTTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLHIAMKELKARKIPIIIRRYLPDGNFEDWSIDELII 128
[Close]
BLAST of NO18G01530 vs. NCBI_GenBank
Match: XP_022081882.1 (DNA-directed RNA polymerases I, II, and III subunit RPABC2-like [Acanthaster planci])

HSP 1 Score: 125.6 bits (314), Expect = 1.400e-25
Identity = 62/95 (65.26%), Postives = 77/95 (81.05%), Query Frame = 0 
Query:   53 GEPVDILPSDGVNSSKANKTRVTTRFLTKYERARILGTRALQISMNAPIMVKPGSETDPLKIAMLELRARKIPIIIRRYLPDGSHEDWRIEELEI 148
            GE +D+LP+      +    R+TT ++TKYERAR+LGTRALQI+MNAP+MV+   ETDPL+IAM EL+ARKIPIIIRRYLPDGS+EDW I+EL I
Sbjct:   35 GENIDVLPA---GEGQQQTERITTPYMTKYERARVLGTRALQIAMNAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDGSYEDWGIDELII 126
The following BLAST results are available for this feature:
BLAST of NO18G01530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23358.12.000e-4578.29dna-directed rna polymerases and iii subunit rpabc... [more]
XP_022292968.11.000e-2867.71DNA-directed RNA polymerases I, II, and III subuni... [more]
XP_011439150.11.200e-2665.96PREDICTED: DNA-directed RNA polymerases I, II, and... [more]
XP_012565800.12.700e-2670.65PREDICTED: DNA-directed RNA polymerases I, II, and... [more]
XP_004347676.14.700e-2662.75RNA polymerase II core subunit [Capsaspora owczarz... [more]
XP_020381812.18.000e-2665.63DNA-directed RNA polymerases I, II, and III subuni... [more]
XP_005849104.11.000e-2561.54hypothetical protein CHLNCDRAFT_21734 [Chlorella v... [more]
KDQ63314.11.400e-2565.31hypothetical protein JAAARDRAFT_53539 [Jaapia argi... [more]
XP_013403508.11.400e-2565.63DNA-directed RNA polymerases I, II, and III subuni... [more]
XP_022081882.11.400e-2565.26DNA-directed RNA polymerases I, II, and III subuni... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR060ncniR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004008NSK004008Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01530.1NO18G01530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608041gene_9082Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100057g24gene7091Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01530.1NO18G01530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01530 ID=NO18G01530|Name=NO18G01530|organism=Nannochloropsis oceanica|type=gene|length=459bp
ATGAGTGACAATGAAGCGGACGCACTTTACGACAACCTTATGGACGACGA
AGAGGACGATTTTATGGGTGAGGAGGAGCCCCTGGACCAAGATGAGGACG
AGGAAGAGATAGGAGGCGGGGGAGTGCAAGATGGTGCCGCGCCGCTGGGC
CGAGACGGGGAGCCCGTGGACATTCTCCCCAGCGATGGAGTCAACTCCAG
CAAAGCAAATAAGACCAGGGTGACCACCCGCTTTTTGACCAAGTACGAAC
GTGCGCGCATCTTGGGGACACGCGCGTTACAGATCAGTATGAATGCCCCC
ATCATGGTTAAGCCTGGGAGTGAGACAGACCCTCTGAAAATCGCCATGTT
GGAACTGCGGGCTCGTAAAATTCCAATAATTATTCGTCGATATCTGCCCG
ATGGGAGCCATGAGGACTGGCGGATTGAGGAGCTGGAGATTCCGGGTTTG
GAGATGTAA
back to top

protein sequence of NO18G01530.1

>NO18G01530.1-protein ID=NO18G01530.1-protein|Name=NO18G01530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MSDNEADALYDNLMDDEEDDFMGEEEPLDQDEDEEEIGGGGVQDGAAPLG
RDGEPVDILPSDGVNSSKANKTRVTTRFLTKYERARILGTRALQISMNAP
IMVKPGSETDPLKIAMLELRARKIPIIIRRYLPDGSHEDWRIEELEIPGL
EM*
back to top
Synonyms
Publications