jgi.p|Nanoce1779_2|672666, gene_7338 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|672666
Unique Namegene_7338
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_19:252990..261248 -

Link to JBrowse

Properties
Property NameValue
TranscriptId672752
ProteinId672666
Product nameSurvival motor neuron (SMN) interacting protein 1 (SIP1)-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:252990..261248 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003689DNA clamp loader activity
GO:0003677DNA binding
GO:0005524ATP binding
GO:0000166nucleotide binding
GO:0017111nucleoside-triphosphatase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005663DNA replication factor C complex
GO:0005634nucleus
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL030ncniL030Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01080NO24G01080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672666mRNA_7338-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672666mRNA_7338Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|672666

>mRNA_7338-protein ID=mRNA_7338-protein|Name=jgi.p|Nanoce1779_2|672666|organism=Nannochloropsis oceanica|type=polypeptide|length=1651bp
MMQQALPLGDGDHIDPHYLHEVQTRAARGEPPISAEEYLLRVRLEFAALP
DVMEATHIDPRAYDSHQTAYMPSQPSLPPTPAELAPSVEWEEDVLANFYE
VRESLTTLEEEVGVGKDRKIKVPPLREEGSWRVFFFGRKERGERGGVGRG
RKRKKVGGEEDEKEMVVEGRNGEERGIEEEGDEMKEEREKEKFPEVPPTP
TATVAPEGEGLEGGIETAAPAATDGPTASSQPHPSSLPPSLAALISPPPP
SLPALPKPAPAVAVAAPPVVYEGPTPPLTSLVLQFDQVCTVRLLAYHAQW
FDSSSSLKYAQGAWLFALLARLSQPLHPEAAALVRQIYRRCYLLRAHFPL
PNPAAEAGEGREEEERGIEGEDEGPVAVLARLNTLIAITGTFFEQAEGEG
AENRDVVEGVENEQDEAEQQQQQQAQPQQQTQQQQQQPPERVETKGEELD
IGEVEEGRQAEEEEREDGETESLPTCQQKFAGQRIDIACHCLGYTMDIRK
FFGKPAGGSATPAKPAGAASSSPAAAGGDGKGSSSSSSSKTISDKPTSAK
SRNKKRQPVEKAKREVEEEEEEVVKPTPSKKRAMEGPAGSAARGKGKERK
EEKQEKEEMEKVSAHSSSAKKKRVKRKVEESDDDNEEDKEEKEEEERDDD
ASWMQDTEESEEEDESEDDDDFGSSRKKKGGKKGGLKRGNASKKAPKRKK
KQKVVEVREEEEEEGGRDGPKRTTRANPPSKPSPSTGTRQAMSAQDFFSG
STTSKYFSGEALATEASPNPAKGKEEGGKEGGAKKGVEVVELEDEVEETK
RPMHNITSPSAAAAAAVAPTPPPAKVKKEKGKPTGPPSSSSPGAVAASFS
PSSSTAASKRKAAKKVEEEEEEEEEGNAGSRVSTPKPGTPAAVASSTRSS
SSSSSSKSPKAVPHWQRRGGGGGRQGALKPSSRELPLGKPGCLEGMTFVV
TGVTEAFGREEVEDLVKQYGGRITTSVSKKTTYLLTGSVLEDGREVSEGR
KYKTAQENNNTKIISEHALYDMIEKSGPPLSSSSTPTPPPLLKPSPPKYV
PGRPSGGPSSVASSSSSSSSSSGAAASSSSLPPPPSSTSSSNSDMWTSKY
APQTMDDLIGATGLASKLGNWLQQWDAIHRHKTKKVAFTNGKENAGARAA
LLSGPPGIGKSTTVALVARLQGFTVYELNASDTRNKKSLQEELGDVLDNT
ALASSGSLAAKTSNSKRLVVMDEVDGMSGQDRGGMQELIRLIKLSKVPII
CICNDRGSTKVRSLANYCYDLRFPRPNKGTIAARMVDIAHREGLEADKNA
IEHIVESVGNDVRQVLNTLQMWAKSSSRMTYMDAKTRLHAIDKDKNLRLS
AFDAAKAILCETDRLSFLDRFNMFFIDYSLLPLLVEQNYIDVIRSRKGDT
LQDKITRMDAAAAAVSDQDLVGNMIMGGDQHWELLPLQAALNVKWLGKYS
STNKRRRLLGELAMHMSGRRISTSSSSLRLEYLPALKTRLVHLLREEGNV
ERAIEFLDAYGMSREDLMETMVELCFTPAGQKEPLQALDSKVKSALTRAY
NSSVHKGQGLGHTAIKGAKKGGGAGLATGVAVDEDGTPLESEAGGAVKEE
EEEAREEGEKEEEVDVSAFVKKGKRGGGGAKGGVEGGAGGKGKGKGKAKK
*
back to top
Synonyms
Publications