jgi.p|Nanoce1779_2|616145, mRNA_12099 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|616145
Unique Name	mRNA_12099
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2661
Alignment location	scaffold_113:15361..18021 -

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Properties


Property Name	Value
TranscriptId	616231
Track	FilteredModels2
ProteinId	616145

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_113	supercontig	scaffold_113:15361..18021 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|616145	gene_12099	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|616145	mRNA_12099-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_12099	CDS_12099	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_113:15361..18021-
coding sequence from alignment at scaffold_113:15361..18021-

mRNA sequence

>mRNA_12099 ID=mRNA_12099|Name=jgi.p|Nanoce1779_2|616145|organism=Nannochloropsis oceanica|type=mRNA|length=2661bp
AATAGAATAAGTCATTACTACTATGGAGATGAGGGGAACGACGACAGACA
AGACCAGGACCACACAACGCCTTGAGATTGCCACCTTGGGCTTTTCTGAC
CTTGGAGGAGAGCACCAGCTGAAGCACTTGCTAAAGGACTTTTGGGGCGG
GCGTAGCAATGAGGAAGAGCTTTTGCAAGGGGCGCGACGCGTGGAGGAGG
AGGGCTGGGCACTCCAAGCCGCCGCGGGCATCGACGCAATTGGCGTGGGA
GACTTTGCACTGTACGACTGGGTACTGAATTGGATTGAATACCTAGGCTG
TGTGCCTCCGCGCTTTCTCCAGCATGCCAACGCCAACAACCTCACGGCCG
TGGAGAGATATTTCCTTATGGCTAGAGGCGGAGATGGCGGCCGAAGCGGT
GGGAAGGGCCAGCATCCAGCCACGGAGGACCCGCCTATTGTGGCATTGGA
GATGCACAAGTGGTTCGATACTAACACTCTCTATTTGATGCCTGAATTTG
ACGAACGCCTTACCCCCCATGCCAACTTCCAGCCGCTCCTCGACTCACTC
GCCCGCGCAAAGACGATGCTGGGGGTGGAGAGGGCCGTACCCATGCTATT
GGGTCCCATCACATTCGTCTGGCTGGGCCATCTCCGCCCTGAAAACCAGC
AGCAGCAGACACGCTTCGAGACGATGCTGGCGGCCTTGATACCACTGTAC
CAGTCTTTGCTGGACCAGATTGCGCATATGGACTACCCGGAGGTGCAGTT
CCACGAGCCTGCGCTTATCACAGAGCATGGACACACCTTTCTCCTGCCTT
ACTTTCAGTCGACGTACCGCATTCTCTTGCAGCACGCGGCAGGCACAGGC
AAGGGTGCTAGACAACAGCTAGGGCAGTCGTCCAAACGGCTGGGACTGCG
CATCGATTTGGTCACGTACTTTGACGAGATGCACGAGGCCGTCTACCGGG
CCGCCATTGCCTTGCCATTCGCTGCGTTGTCACTCGACTTTACCCACCGC
GGCGAGGCGAGTGCGGGCTACACTATCTTCCTCGAGAACTTCGGCTTTCC
TACCGACATGCGCCTGGGGCTCGGTGTTTTGGACGGGCGCTCCGTCTGGA
AGCCGGATCCGCCCATGGTCCTCCCAGATATGGCCATGCTCCACCAATCA
GTTAAGCACGTCCGACTCCAAGCATCGTGCTCCCTCCGTTACTTGCCCTG
GAGCGTCAAGACCGAGACCAGTCTCCAAAAGGCCTATCCACTCGTTTTTC
CACTCTTGAGCTTTGCGGAAGAAAAGCTGGGAGATCTGAAGAGCCTGGCC
GAGGCCACCATGGGCGAGGACGTCAAGGTGCTGGAGGAGTGGAAGTGGAC
GCGCCTGCAGCGCGACACGAGCTACGACCCTCCCACCAGTCGTACCTCCC
GTGGCGCCATAACTGCGCGGGAACGCTCCCGAAACCTGCAGACGAACGAC
TTTGAGCGCTCCCTTGCGTACAACGATCGACGACAGCAGCAGTACTGCTT
CAAGTTAGGTGGAGTGCTACCCACAACAGTCGTGGGGTGCCTCCCGAGCT
TGGGTAAGACAAGACAAGGGACGGATCCGGGCGAGGCGGAGGAGCGGGTA
AAGGCCGAGATTGAGCGAGTGGTGCAATTGCAAGAACGGGCGGGGGTGGA
TTTATTAGCTCATGGGGCATATAACCCGGGGGATATGGTTGAAGCGATCG
CGGCTCGGTTGGAAGGGATGGCCACAACGGAGCATGGGTGGGTGCGGGTG
TATGGCTCGCGATGTGTACGTCCGCCAATTGTCATCGGCGACATGTGGCG
ACCAAAGGCGCTGACGGTGGATGGTTACAAGTATGCGCAATCTTTGACGA
GCAAGGTCGTGAAGGGCCAGCTCCCAGGCCCGACCACGCTGCTGCAGTGG
TCCTACCCTGCCGTGGATCGCCCGCGAAAGGAGCAGATACTGCAGTTGGC
GTTGTGCTTACGAGACGAGATCCGGGATCTCGAGATTGCCGGCGCCAAGG
TCATTGAGGTGGAGGAATTAGGTTTTCGGGAAGGGTTACCGTTGCGGGGT
CAAAAACGGGTGGACTATCTAGCGTTTATGGCCGAGGCCTTTCGACTCGC
CACATCCATTGCCGGGCCACATATCGAGATTCACACGCATGTGGCGTACA
CAGAGGTGAGGGATTGTATCCCCGCTTTGTTGGATTTTGATGCTGATGCC
TACCTATTTGAAAATACGCGCGCTCACGACACCGCCCGCCGAGCCTTGAA
AAATGCTGGATTCCCACGTCGTTTGGGATTGGGCTGCTTTGACGTGCATT
CCCCCGTGGTTCCTTCTGTCCACGATATCCAGGAGCGACTGCGAGCACAA
ATCGAGTCCTTTCCACCCGAGCAGCTGCTCGTCGTGCCGGATGGACCGCT
TCGCACACGATCGTGGGAGGAGGTGGATGCGGCACTGAAAAACATGAGTG
CGGCCGCGAAGGGTTTGAGGGAGGAGTGGGAAGAATCTCGCATGTTAAAA
GTTCCGTCGTTGGAGCAGAGCATGCGAAGCGCAAGCCTGGAGACGAAGGC
GCGCAGTGCTAGTTTCGATTTGAGGAGTGAAAAGGCGAAGCCAGGGGGAG
GAGGAGGAAAAAGAGGGGGAGGGAGTGTGCCATCGTCGCCGCGAGCGTGA
AGGAGGAGTGG

protein sequence of jgi.p|Nanoce1779_2|616145

>mRNA_12099-protein ID=mRNA_12099-protein|Name=jgi.p|Nanoce1779_2|616145|organism=Nannochloropsis oceanica|type=polypeptide|length=876bp
MEMRGTTTDKTRTTQRLEIATLGFSDLGGEHQLKHLLKDFWGGRSNEEEL
LQGARRVEEEGWALQAAAGIDAIGVGDFALYDWVLNWIEYLGCVPPRFLQ
HANANNLTAVERYFLMARGGDGGRSGGKGQHPATEDPPIVALEMHKWFDT
NTLYLMPEFDERLTPHANFQPLLDSLARAKTMLGVERAVPMLLGPITFVW
LGHLRPENQQQQTRFETMLAALIPLYQSLLDQIAHMDYPEVQFHEPALIT
EHGHTFLLPYFQSTYRILLQHAAGTGKGARQQLGQSSKRLGLRIDLVTYF
DEMHEAVYRAAIALPFAALSLDFTHRGEASAGYTIFLENFGFPTDMRLGL
GVLDGRSVWKPDPPMVLPDMAMLHQSVKHVRLQASCSLRYLPWSVKTETS
LQKAYPLVFPLLSFAEEKLGDLKSLAEATMGEDVKVLEEWKWTRLQRDTS
YDPPTSRTSRGAITARERSRNLQTNDFERSLAYNDRRQQQYCFKLGGVLP
TTVVGCLPSLGKTRQGTDPGEAEERVKAEIERVVQLQERAGVDLLAHGAY
NPGDMVEAIAARLEGMATTEHGWVRVYGSRCVRPPIVIGDMWRPKALTVD
GYKYAQSLTSKVVKGQLPGPTTLLQWSYPAVDRPRKEQILQLALCLRDEI
RDLEIAGAKVIEVEELGFREGLPLRGQKRVDYLAFMAEAFRLATSIAGPH
IEIHTHVAYTEVRDCIPALLDFDADAYLFENTRAHDTARRALKNAGFPRR
LGLGCFDVHSPVVPSVHDIQERLRAQIESFPPEQLLVVPDGPLRTRSWEE
VDAALKNMSAAAKGLREEWEESRMLKVPSLEQSMRSASLETKARSASFDL
RSEKAKPGGGGGKRGGGSVPSSPRA*

mRNA from alignment at scaffold_113:15361..18021-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12099 ID=mRNA_12099|Name=jgi.p|Nanoce1779_2|616145|organism=Nannochloropsis oceanica|type=mRNA|length=2661bp|location=Sequence derived from alignment at scaffold_113:15361..18021- (Nannochloropsis oceanica)
AATAGAATAAGTCATTACTACTATGGAGATGAGGGGAACGACGACAGACA
AGACCAGGACCACACAACGCCTTGAGATTGCCACCTTGGGCTTTTCTGAC
CTTGGAGGAGAGCACCAGCTGAAGCACTTGCTAAAGGACTTTTGGGGCGG
GCGTAGCAATGAGGAAGAGCTTTTGCAAGGGGCGCGACGCGTGGAGGAGG
AGGGCTGGGCACTCCAAGCCGCCGCGGGCATCGACGCAATTGGCGTGGGA
GACTTTGCACTGTACGACTGGGTACTGAATTGGATTGAATACCTAGGCTG
TGTGCCTCCGCGCTTTCTCCAGCATGCCAACGCCAACAACCTCACGGCCG
TGGAGAGATATTTCCTTATGGCTAGAGGCGGAGATGGCGGCCGAAGCGGT
GGGAAGGGCCAGCATCCAGCCACGGAGGACCCGCCTATTGTGGCATTGGA
GATGCACAAGTGGTTCGATACTAACACTCTCTATTTGATGCCTGAATTTG
ACGAACGCCTTACCCCCCATGCCAACTTCCAGCCGCTCCTCGACTCACTC
GCCCGCGCAAAGACGATGCTGGGGGTGGAGAGGGCCGTACCCATGCTATT
GGGTCCCATCACATTCGTCTGGCTGGGCCATCTCCGCCCTGAAAACCAGC
AGCAGCAGACACGCTTCGAGACGATGCTGGCGGCCTTGATACCACTGTAC
CAGTCTTTGCTGGACCAGATTGCGCATATGGACTACCCGGAGGTGCAGTT
CCACGAGCCTGCGCTTATCACAGAGCATGGACACACCTTTCTCCTGCCTT
ACTTTCAGTCGACGTACCGCATTCTCTTGCAGCACGCGGCAGGCACAGGC
AAGGGTGCTAGACAACAGCTAGGGCAGTCGTCCAAACGGCTGGGACTGCG
CATCGATTTGGTCACGTACTTTGACGAGATGCACGAGGCCGTCTACCGGG
CCGCCATTGCCTTGCCATTCGCTGCGTTGTCACTCGACTTTACCCACCGC
GGCGAGGCGAGTGCGGGCTACACTATCTTCCTCGAGAACTTCGGCTTTCC
TACCGACATGCGCCTGGGGCTCGGTGTTTTGGACGGGCGCTCCGTCTGGA
AGCCGGATCCGCCCATGGTCCTCCCAGATATGGCCATGCTCCACCAATCA
GTTAAGCACGTCCGACTCCAAGCATCGTGCTCCCTCCGTTACTTGCCCTG
GAGCGTCAAGACCGAGACCAGTCTCCAAAAGGCCTATCCACTCGTTTTTC
CACTCTTGAGCTTTGCGGAAGAAAAGCTGGGAGATCTGAAGAGCCTGGCC
GAGGCCACCATGGGCGAGGACGTCAAGGTGCTGGAGGAGTGGAAGTGGAC
GCGCCTGCAGCGCGACACGAGCTACGACCCTCCCACCAGTCGTACCTCCC
GTGGCGCCATAACTGCGCGGGAACGCTCCCGAAACCTGCAGACGAACGAC
TTTGAGCGCTCCCTTGCGTACAACGATCGACGACAGCAGCAGTACTGCTT
CAAGTTAGGTGGAGTGCTACCCACAACAGTCGTGGGGTGCCTCCCGAGCT
TGGGTAAGACAAGACAAGGGACGGATCCGGGCGAGGCGGAGGAGCGGGTA
AAGGCCGAGATTGAGCGAGTGGTGCAATTGCAAGAACGGGCGGGGGTGGA
TTTATTAGCTCATGGGGCATATAACCCGGGGGATATGGTTGAAGCGATCG
CGGCTCGGTTGGAAGGGATGGCCACAACGGAGCATGGGTGGGTGCGGGTG
TATGGCTCGCGATGTGTACGTCCGCCAATTGTCATCGGCGACATGTGGCG
ACCAAAGGCGCTGACGGTGGATGGTTACAAGTATGCGCAATCTTTGACGA
GCAAGGTCGTGAAGGGCCAGCTCCCAGGCCCGACCACGCTGCTGCAGTGG
TCCTACCCTGCCGTGGATCGCCCGCGAAAGGAGCAGATACTGCAGTTGGC
GTTGTGCTTACGAGACGAGATCCGGGATCTCGAGATTGCCGGCGCCAAGG
TCATTGAGGTGGAGGAATTAGGTTTTCGGGAAGGGTTACCGTTGCGGGGT
CAAAAACGGGTGGACTATCTAGCGTTTATGGCCGAGGCCTTTCGACTCGC
CACATCCATTGCCGGGCCACATATCGAGATTCACACGCATGTGGCGTACA
CAGAGGTGAGGGATTGTATCCCCGCTTTGTTGGATTTTGATGCTGATGCC
TACCTATTTGAAAATACGCGCGCTCACGACACCGCCCGCCGAGCCTTGAA
AAATGCTGGATTCCCACGTCGTTTGGGATTGGGCTGCTTTGACGTGCATT
CCCCCGTGGTTCCTTCTGTCCACGATATCCAGGAGCGACTGCGAGCACAA
ATCGAGTCCTTTCCACCCGAGCAGCTGCTCGTCGTGCCGGATGGACCGCT
TCGCACACGATCGTGGGAGGAGGTGGATGCGGCACTGAAAAACATGAGTG
CGGCCGCGAAGGGTTTGAGGGAGGAGTGGGAAGAATCTCGCATGTTAAAA
GTTCCGTCGTTGGAGCAGAGCATGCGAAGCGCAAGCCTGGAGACGAAGGC
GCGCAGTGCTAGTTTCGATTTGAGGAGTGAAAAGGCGAAGCCAGGGGGAG
GAGGAGGAAAAAGAGGGGGAGGGAGTGTGCCATCGTCGCCGCGAGCGTGA
AGGAGGAGTGG

Coding sequence (CDS) from alignment at scaffold_113:15361..18021-

>mRNA_12099 ID=mRNA_12099|Name=jgi.p|Nanoce1779_2|616145|organism=Nannochloropsis oceanica|type=CDS|length=2628bp|location=Sequence derived from alignment at scaffold_113:15361..18021- (Nannochloropsis oceanica)
ATGGAGATGAGGGGAACGACGACAGACAAGACCAGGACCACACAACGCCT
TGAGATTGCCACCTTGGGCTTTTCTGACCTTGGAGGAGAGCACCAGCTGA
AGCACTTGCTAAAGGACTTTTGGGGCGGGCGTAGCAATGAGGAAGAGCTT
TTGCAAGGGGCGCGACGCGTGGAGGAGGAGGGCTGGGCACTCCAAGCCGC
CGCGGGCATCGACGCAATTGGCGTGGGAGACTTTGCACTGTACGACTGGG
TACTGAATTGGATTGAATACCTAGGCTGTGTGCCTCCGCGCTTTCTCCAG
CATGCCAACGCCAACAACCTCACGGCCGTGGAGAGATATTTCCTTATGGC
TAGAGGCGGAGATGGCGGCCGAAGCGGTGGGAAGGGCCAGCATCCAGCCA
CGGAGGACCCGCCTATTGTGGCATTGGAGATGCACAAGTGGTTCGATACT
AACACTCTCTATTTGATGCCTGAATTTGACGAACGCCTTACCCCCCATGC
CAACTTCCAGCCGCTCCTCGACTCACTCGCCCGCGCAAAGACGATGCTGG
GGGTGGAGAGGGCCGTACCCATGCTATTGGGTCCCATCACATTCGTCTGG
CTGGGCCATCTCCGCCCTGAAAACCAGCAGCAGCAGACACGCTTCGAGAC
GATGCTGGCGGCCTTGATACCACTGTACCAGTCTTTGCTGGACCAGATTG
CGCATATGGACTACCCGGAGGTGCAGTTCCACGAGCCTGCGCTTATCACA
GAGCATGGACACACCTTTCTCCTGCCTTACTTTCAGTCGACGTACCGCAT
TCTCTTGCAGCACGCGGCAGGCACAGGCAAGGGTGCTAGACAACAGCTAG
GGCAGTCGTCCAAACGGCTGGGACTGCGCATCGATTTGGTCACGTACTTT
GACGAGATGCACGAGGCCGTCTACCGGGCCGCCATTGCCTTGCCATTCGC
TGCGTTGTCACTCGACTTTACCCACCGCGGCGAGGCGAGTGCGGGCTACA
CTATCTTCCTCGAGAACTTCGGCTTTCCTACCGACATGCGCCTGGGGCTC
GGTGTTTTGGACGGGCGCTCCGTCTGGAAGCCGGATCCGCCCATGGTCCT
CCCAGATATGGCCATGCTCCACCAATCAGTTAAGCACGTCCGACTCCAAG
CATCGTGCTCCCTCCGTTACTTGCCCTGGAGCGTCAAGACCGAGACCAGT
CTCCAAAAGGCCTATCCACTCGTTTTTCCACTCTTGAGCTTTGCGGAAGA
AAAGCTGGGAGATCTGAAGAGCCTGGCCGAGGCCACCATGGGCGAGGACG
TCAAGGTGCTGGAGGAGTGGAAGTGGACGCGCCTGCAGCGCGACACGAGC
TACGACCCTCCCACCAGTCGTACCTCCCGTGGCGCCATAACTGCGCGGGA
ACGCTCCCGAAACCTGCAGACGAACGACTTTGAGCGCTCCCTTGCGTACA
ACGATCGACGACAGCAGCAGTACTGCTTCAAGTTAGGTGGAGTGCTACCC
ACAACAGTCGTGGGGTGCCTCCCGAGCTTGGGTAAGACAAGACAAGGGAC
GGATCCGGGCGAGGCGGAGGAGCGGGTAAAGGCCGAGATTGAGCGAGTGG
TGCAATTGCAAGAACGGGCGGGGGTGGATTTATTAGCTCATGGGGCATAT
AACCCGGGGGATATGGTTGAAGCGATCGCGGCTCGGTTGGAAGGGATGGC
CACAACGGAGCATGGGTGGGTGCGGGTGTATGGCTCGCGATGTGTACGTC
CGCCAATTGTCATCGGCGACATGTGGCGACCAAAGGCGCTGACGGTGGAT
GGTTACAAGTATGCGCAATCTTTGACGAGCAAGGTCGTGAAGGGCCAGCT
CCCAGGCCCGACCACGCTGCTGCAGTGGTCCTACCCTGCCGTGGATCGCC
CGCGAAAGGAGCAGATACTGCAGTTGGCGTTGTGCTTACGAGACGAGATC
CGGGATCTCGAGATTGCCGGCGCCAAGGTCATTGAGGTGGAGGAATTAGG
TTTTCGGGAAGGGTTACCGTTGCGGGGTCAAAAACGGGTGGACTATCTAG
CGTTTATGGCCGAGGCCTTTCGACTCGCCACATCCATTGCCGGGCCACAT
ATCGAGATTCACACGCATGTGGCGTACACAGAGGTGAGGGATTGTATCCC
CGCTTTGTTGGATTTTGATGCTGATGCCTACCTATTTGAAAATACGCGCG
CTCACGACACCGCCCGCCGAGCCTTGAAAAATGCTGGATTCCCACGTCGT
TTGGGATTGGGCTGCTTTGACGTGCATTCCCCCGTGGTTCCTTCTGTCCA
CGATATCCAGGAGCGACTGCGAGCACAAATCGAGTCCTTTCCACCCGAGC
AGCTGCTCGTCGTGCCGGATGGACCGCTTCGCACACGATCGTGGGAGGAG
GTGGATGCGGCACTGAAAAACATGAGTGCGGCCGCGAAGGGTTTGAGGGA
GGAGTGGGAAGAATCTCGCATGTTAAAAGTTCCGTCGTTGGAGCAGAGCA
TGCGAAGCGCAAGCCTGGAGACGAAGGCGCGCAGTGCTAGTTTCGATTTG
AGGAGTGAAAAGGCGAAGCCAGGGGGAGGAGGAGGAAAAAGAGGGGGAGG
GAGTGTGCCATCGTCGCCGCGAGCGTGA

Synonyms

Publications