jgi.p|Nanoce1779_2|675399, gene_12117 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|675399
Unique Name	gene_12117
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Alignment location	scaffold_102:13027..22641 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	675485
ProteinId	675399
Product name	hypothetical protein
Portal id	Nanoce1779_2

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_102	supercontig	scaffold_102:13027..22641 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE164714	2022-03-15
GO annotation for N. oceanica CCMP1779 v2	2020-03-30
PRJNA285666	2019-07-03
PRJNA157867	2019-07-02
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0004386	helicase activity
GO:0005524	ATP binding

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniL031	ncniL031	Nannochloropsis oceanica (N. oceanica CCMP1779)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO21G02430	NO21G02430	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|675399	mRNA_12117-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|675399	mRNA_12117	Nannochloropsis oceanica (N. oceanica CCMP1779)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of jgi.p|Nanoce1779_2|675399

>mRNA_12117-protein ID=mRNA_12117-protein|Name=jgi.p|Nanoce1779_2|675399|organism=Nannochloropsis oceanica|type=polypeptide|length=1518bp
MTRKCSNACGKEEDQCPSAACRRRKEPPTTAAAAAKDSEKKKKEEEEEEE
EEGREGGGGVRPPVAKKGMWVDEAGAARVGTRALQEGDFLIHDDYGFTRF
ERLVWGRGVGGRGEAKRLVRLVFGGTRGEGKRVDLSSLSWPLLAFHAPRG
THGVVLGRYNRRRQAEMESEEGGHLEKALVRAEEAAAELMEASFGFTLTE
GQARTLKEVERDMVWRARPMDRLVLGDVGFGKTEVAVRAIHRAVCNHRQC
VLLAPTTILAAQHYARLCARFPWMNIEMMRGSDTASKAKDVRARLKEGVI
QVVVGTTSVTGKNVRFKNLGLVVVDEEQRLGVSQKEKLKALAKGVDVLTL
SATPIPRTLQMALSGMREVSHIDTAPSSRKPVFTHIEAWDPAKVERALRA
ELARGGQAFYVVPRIRDIPHHVDMLHDLLKGARKDGKDATICVAHGALPA
GEAEEVLVRFAMREGDVLVATTLIENGLDVPTVNTVVVAQAHKLGLASLY
QLRGRVGRSDKQAFAYFFHPRAVKGEEGEKGGREIAAEEKGRERKTSATH
TQWDDEDEEEAETDNAEILSTSLSSDPFLRKRQIALLGGRVMTSEAVQRL
AALKEYSHLLGMGPQLAKADLAIRGAGEVLGYEQSGDKGSGVGYDVYMDM
LAEALLKVRGTAIEPTPFTDINLMDGQPTNQVLSASFLPSSFFPNEETRM
AEVEEARLAPTFKHLRDLHKRWRVTYHSSSPHTPLPRAVRMFFIRLNLLL
ACRILSGETLALIKPTEDSRPRLILVTRNLLSFHWDALSSALPSSLSPSR
HPSQRRHANLRRDVYFREGVMEREEEEEGKEGVDKVKKRGCIIMELRDET
LAAETALSVFVPLAEHFVCSSNTMPNTSNESGSNALNKKQLLLIVLGGAV
GLFALTTTTTPLLSTPSSPWVNRSLRRRQLSHAGPLERVGKALDHALKPR
FGKHKGKDIGGNWVHKAVGDSEGLSRPDLGMMLAGENPAEPNQANDSVLH
LGGGLRNDPIVKAVQLEYIKALPPTFSATPATPNQMVPVDQVNGNGGAKD
NNKAKSVKVPGHDKSHKKVHGHEEELDHLHKHGHGQKKKKHVNPLVVAHL
YSKKKALQAAHKMEKAVLKAKGKKLHYELEKKSKEMHRDIAKAAHGHAAH
IKKTKKQAEAKAAHVAHAAHAVAHAVHETHNVDHLHRALQPGQNLSEEDK
EKLRMIAREAALKVLKDAAQDAGFDAALLAEAEEEAEAAAGAKAENYEEE
EIEEALADLLNLDGLLLLSKPAISFLDRVQVTNDTIANTSKVTDATTSDT
PLIQDMLLALRDTNMTATEAERLRSEARTAAIQAIRDVAREAGIEDRIQD
DMSLENLFKNIAAAANSGGPAVTTGDASAATPTGNRMLHHELDHKDKNDG
YMGDRQLAGRWSYDDEKTQAPEHGWDEAYFHEGRAGGRRSYEDYNKHGTH
GSLGKHGYLSDNESSDEHDRQLWNYYSSGRKMGGRGESDEEDEAFGEDDF
FAEAQRRHHGKQGHHFH*

Synonyms

Publications