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Properties
| Property Name | Value |
|---|
| TranscriptId | 626530 |
| Track | FilteredModels2 |
| ProteinId | 626444 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_76 | supercontig | scaffold_76:19430..22247 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10679 ID=mRNA_10679|Name=jgi.p|Nanoce1779_2|626444|organism=Nannochloropsis oceanica|type=mRNA|length=1899bp
ATGGCGAGTCAAAAAGACCGTTTCGAGAATAGGGTGACTGCGGAGAGTAT
TGAGGAGGCCTTGAGCCCGTTGGTGGAGGGAGGGCGAGAGGGGGTGAAGA
GATTTCCTGCCTTTGTCCTGAGGCTGCAGCATGTCCAGCATATTTGTCAC
AAAATCTCGGCGAGACTCCTGAAGAGGACGAGAAGGAGGAAGAACGAAGA
GGAGGAAGGGGAGGAGGAAGGGGAGGAGGGCACTTCCTCCTCCGCCTTTG
ACTTGCTGGCCGCCCTTCACCCCACCCCCGCCGTGGCAGGCGAGCCCCGC
TTGACAGCCCTGCAAGCAATCCGCCAGCTTGAGCCTTTTGACCGGGGGTT
CTATGCCGGTCCTGTCGGATTTCTCTCGCCCGCCTGTGCTGAATTCGCGG
TTGCCATCCGCTCGGTTCTAATCGTGCGAGAACGCGCCCACGTTTTTGCA
GGGGCAGGAATCGTCCCCGGCTCTACCGCAGAAGGAGAATGGGCCGAAAT
TGGTGCCAAAATGGCAAATTTCGTGCGAATGTTTCCTCGTCCGTCGCAGC
CGTTGCGGAGTCTGCCCAATTTGGCCACGCTGTGGGCAACGCTTGTGGTC
GAGGAGTTGGTCAGGAATGGAGTGACTCACTTTGTTATTGCCCCGGGATC
GAGGTCCACCCCCCTGGTGACGGCAGCGGCGAGGCATCCACATACAACCC
TGATGGTGCACCATGATGAGCGCGGGGCCGGGTTTTATTGCGTGGGCTAC
GCGCGGGCAAGGGGACGACCAGCTGCTGTGATAGTCACGTCGGGCACCGC
CGTTGCCAATCTTCTGCCTGCAGCAGTAGAAGCAGCGACGGACCGTGTCC
CTCTTCTGCTGCTCACTGCTGACCGTCCTCCAGAACAAAGGGATTGTGGG
GCTAATCAGACAGTAGCTCAACCGAACATGTTTTTAAATTTTGCTCGTTG
GTCGAAAGATATGCCCTGTCCCACCCACGAGGTCCTCGCTTCCTCCCTTT
TGTCCGACATTGATTACGCAGTCAGCATGGCCCGGGGGGTGGATCCTGGG
CCCGTCCATCTGAATTTCATGTTGAGGGAGAATTTGGCGCCGGAGGGGGG
AGCAGTGAGGGATACAGCAGTGCCAGGATTACATTCTGAGTGGCCTGACG
CATTAGTGCAGACTCTGCAGGCGCGGCTCCGCTGGCAAGTGTCGCTATGA
ACAGAGGTGCCTCGGGAATTGACGGCATTTTGAGCACCGCAATGGGGTAC
GCCACGGGCTTGGGGAAACCAGTCACTTTATTGGTGGGGGATATGGCCTG
CTTGCACGATCTAAATGCTCTACATGCCTTGTCTGCAGCCCCTGCCTCCG
CCTCTGCTCCTGCCATGCCCCTGACTGTTGTGTTGGTCAACAATGGAGGG
GGGGGGATCTTCTCCTTCCTCCCCATCGCGCGACATGCCGACGTCTTTTC
TCCCTTCTTCGATTCGCCACACGACCTCCAATTCGGTCCTGTCACCCAAG
CATTCAACCTCCCCTATCAACACTGCAAATCCGCTGGAGACTTGACCACC
GCCCTCGCCCTAGCCCAGGCTAGCGGCCGTGCCTCCCTCATTGAAGTCCT
AACCGACCGGGCGCAAAACGTACGCATCCATCGACAGCTAGGGGCAGGCA
TTCGTTCCTCCCTCCACGCGGGCTTAACGCAGCTCCTCCGATTAGATTGG
ATCCGCGCAGGTCCCCGCGCCAAGCCCTCCCTCTTGCTTTTGCATGGCTT
TTTGGGGTGTAAGGAGGACTGGGCGCCTTTGCTGTGGACAGGCGGAGGGG
TCGGTGCGAATAGCAGCACCGGTGGCAGTAGTAATAGCAGTGGCGGTGGT
GGGATGGGTATGAGTGGCAGTGGGAGTGGTGGGGTGTGTGTGGGGATGC back to topprotein sequence of jgi.p|Nanoce1779_2|626444 >mRNA_10679-protein ID=mRNA_10679-protein|Name=jgi.p|Nanoce1779_2|626444|organism=Nannochloropsis oceanica|type=polypeptide|length=400bp
MASQKDRFENRVTAESIEEALSPLVEGGREGVKRFPAFVLRLQHVQHICH
KISARLLKRTRRRKNEEEEGEEEGEEGTSSSAFDLLAALHPTPAVAGEPR
LTALQAIRQLEPFDRGFYAGPVGFLSPACAEFAVAIRSVLIVRERAHVFA
GAGIVPGSTAEGEWAEIGAKMANFVRMFPRPSQPLRSLPNLATLWATLVV
EELVRNGVTHFVIAPGSRSTPLVTAAARHPHTTLMVHHDERGAGFYCVGY
ARARGRPAAVIVTSGTAVANLLPAAVEAATDRVPLLLLTADRPPEQRDCG
ANQTVAQPNMFLNFARWSKDMPCPTHEVLASSLLSDIDYAVSMARGVDPG
PVHLNFMLRENLAPEGGAVRDTAVPGLHSEWPDALVQTLQARLRWQVSL* back to topmRNA from alignment at scaffold_76:19430..22247- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10679 ID=mRNA_10679|Name=jgi.p|Nanoce1779_2|626444|organism=Nannochloropsis oceanica|type=mRNA|length=2818bp|location=Sequence derived from alignment at scaffold_76:19430..22247- (Nannochloropsis oceanica)
ATGGCGAGTCAAAAAGACCGTTTCGAGAATAGGGTGACTGCGGAGAGTAT
TGAGGAGGCCTTGAGCCCGTTGGTGGAGGGAGGGCGAGAGGGGGTGAAGA
GATTTCCTGCCTTTGTCCTGAGGCTGCAGCATGTCCAGCATATTTGTCAC
AAAATCTCGGCGAGACTCCTGAAGAGGACGAGAAGGAGGAAGAACGAAGA
GGAGGAAGGGGAGGAGGAAGGGGAGGAGGGCACTTCCTCCTCCGCCTTTG
ACTTGCTGGCCGCCCTTCACCCCACCCCCGCCGTGGCAGGCGAGCCCCGC
TTGACAGCCCTGCAAGCAATCCGCCAGCTTGAGCCTTTTGACCGGGGGTT
CTATGCCGGTCCTGTCGGATTTCTCTCGCCCGCCTGTGCTGAATTCGCGG
TTGCCATCCGCTCGGTTCTAATCGTGCGAGAACGCGCCCACGTTTTTGCA
GGGGCAGGAATCGTCCCCGGCTCTACCGCAGAAGGAGAATGGGCCGAAAT
TGGTGCCAAAATGGCAAATTTCGTGCGAATGTTTCCTCGTCCGTCGCAGC
CGTTGCGGAGTCTGCCCAATTTGGCCACGCTGTGGGCAACGCTTGTGGTC
GAGGAGTTGGTCAGGAATGGAGTGACTCACTTTGTTATTGCCCCGGGATC
GAGGTCCACCCCCCTGGTGACGGCAGCGGCGAGGCATCCACATACAACCC
TGATGGTGCACCATGATGAGCGCGGGGCCGGGTTTTATTGCGTGGGCTAC
GCGCGGGCAAGGGGACGACCAGCTGCTGTGATAGTCACGTCGGGCACCGC
CGTTGCCAATCTTCTGCCTGCAGCAGTAGAAGCAGCGACGGACCGTGTCC
CTCTTCTGCTGCTCACTGCTGACCGTCCTCCAGAACAAAGGGATTGTGGG
GCTAATCAGACAGTAGCTCAACCGAACATGTTTTTAAATTTTGCTCGTTG
GTCGAAAGATATGCCCTGTCCCACCCACGAGGTCCTCGCTTCCTCCCTTT
TGTCCGACATTGATTACGCAGTCAGCATGGCCCGGGGGGTGGATCCTGGG
CCCGTCCATCTGAATTTCATGTTGAGGGAGAATTTGGCGCCGGAGGGGGG
AGCAGTGAGGGATACAGCAGTGCCAGGATTACATTCTGAGTGGCCTGACG
CATGTTTGGGTGATCGGAGATTTGCTCAGTGGGAGAGGAGCCTACAACCA
TATACGTCGTTTCCGCGGTTGAGACCTTCGTGCCCGCTATCGCCCGAGTT
GCTCGCGGCAGTGCATGAGGCGGAGAGGGGTTTGTTGGTGCTGGGGAGGT
TGCCACAGAGGAGAGATAGGGCGCACGTGCGATGGTTGGCGCAGGAGTTG
CAATGGCCGGTATTCGCAGATGTGGGGTCGGGGTTGAGGTGTGATCCGAC
GTTGGGACACTTATTGATAGGCCCGTATGAGAGTCTGTTGGCTGATCCTT
TGACGTGTGCTGCGTTGGATGCTGATGTTATTTTGCAAATCGGCGCGCCG
CTTGTGAGCAAACGGTTGCCGAAGTTCATGGTGGCGTCGCGGGCGACAAC
CTTGATCCATGTGATTCCTTTCCCTGCGAGACGGGACCCGGAACTGAGTG
CCACTTATCATGTCTGCTCGGATATCCCGACGTTTGTACGGGGCTTGGAT
TCCTCGGTGGATTGGCAGCAGCGGCTGGGAGGGAAGGAAGGCAGAAGGGT
GGGAGGAGGGGGGGGGCAGAGTGGGTTGTTGCCGTTGCTCAAGACGTTAG
CCGTGCGGATTGAGAACGAAATTTGCGAAGAGCTCGGACCTGACATGACG
ATTGCTGCTGCTCCCTCGACAGTACCCTTTGTCTCCTCCCCCTCCTCTCC
TGCAATCAATCCTTCCCCTTCTCCGTCCTCTCTTCCTTCCTCCACCTCGA
CCGACGTCCGCCCGCTGAACGAACCCATGGTGGCTCATCTCGTCGCTCGC
CTCCTCCCCGCCGGCCACGGCCTCTTCCTTTCCAACAGCATGCCTGTCCG
CGATGTTGAAGTGTTTGCCACCTGCTCTTCTTCCTCTTCCCCCTCCTCCC
TCCCTACCTCTTCCTCCTCCAGTAGTGCAGACTCTGCAGGCGCGGCTCCG
CTGGCAAGTGTCGCTATGAACAGAGGTGCCTCGGGAATTGACGGCATTTT
GAGCACCGCAATGGGGTACGCCACGGGCTTGGGGAAACCAGTCACTTTAT
TGGTGGGGGATATGGCCTGCTTGCACGATCTAAATGCTCTACATGCCTTG
TCTGCAGCCCCTGCCTCCGCCTCTGCTCCTGCCATGCCCCTGACTGTTGT
GTTGGTCAACAATGGAGGGGGGGGGATCTTCTCCTTCCTCCCCATCGCGC
GACATGCCGACGTCTTTTCTCCCTTCTTCGATTCGCCACACGACCTCCAA
TTCGGTCCTGTCACCCAAGCATTCAACCTCCCCTATCAACACTGCAAATC
CGCTGGAGACTTGACCACCGCCCTCGCCCTAGCCCAGGCTAGCGGCCGTG
CCTCCCTCATTGAAGTCCTAACCGACCGGGCGCAAAACGTACGCATCCAT
CGACAGCTAGGGGCAGGCATTCGTTCCTCCCTCCACGCGGGCTTAACGCA
GCTCCTCCGATTAGATTGGATCCGCGCAGGTCCCCGCGCCAAGCCCTCCC
TCTTGCTTTTGCATGGCTTTTTGGGGTGTAAGGAGGACTGGGCGCCTTTG
CTGTGGACAGGCGGAGGGGTCGGTGCGAATAGCAGCACCGGTGGCAGTAG
TAATAGCAGTGGCGGTGGTGGGATGGGTATGAGTGGCAGTGGGAGTGGTG
GGGTGTGTGTGGGGATGC back to topCoding sequence (CDS) from alignment at scaffold_76:19430..22247- >mRNA_10679 ID=mRNA_10679|Name=jgi.p|Nanoce1779_2|626444|organism=Nannochloropsis oceanica|type=CDS|length=2400bp|location=Sequence derived from alignment at scaffold_76:19430..22247- (Nannochloropsis oceanica)
TAGTGCAGACTCTGCAGGCGCGGCTCCGCTGGCAAGTGTCGCTATGAATG
GCGAGTCAAAAAGACCGTTTCGAGAATAGGGTGACTGCGGAGAGTATTGA
GGAGGCCTTGAGCCCGTTGGTGGAGGGAGGGCGAGAGGGGGTGAAGAGAT
TTCCTGCCTTTGTCCTGAGGCTGCAGCATGTCCAGCATATTTGTCACAAA
ATCTCGGCGAGACTCCTGAAGAGGACGAGAAGGAGGAAGAACGAAGAGGA
GGAAGGGGAGGAGGAAGGGGAGGAGGGCACTTCCTCCTCCGCCTTTGACT
TGCTGGCCGCCCTTCACCCCACCCCCGCCGTGGCAGGCGAGCCCCGCTTG
ACAGCCCTGCAAGCAATCCGCCAGCTTGAGCCTTTTGACCGGGGGTTCTA
TGCCGGTCCTGTCGGATTTCTCTCGCCCGCCTGTGCTGAATTCGCGGTTG
CCATCCGCTCGGTTCTAATCGTGCGAGAACGCGCCCACGTTTTTGCAGGG
GCAGGAATCGTCCCCGGCTCTACCGCAGAAGGAGAATGGGCCGAAATTGG
TGCCAAAATGGCAAATTTCGTGCGAATGTTTCCTCGTCCGTCGCAGCCGT
TGCGGAGTCTGCCCAATTTGGCCACGCTGTGGGCAACGCTTGTGGTCGAG
GAGTTGGTCAGGAATGGAGTGACTCACTTTGTTATTGCCCCGGGATCGAG
GTCCACCCCCCTGGTGACGGCAGCGGCGAGGCATCCACATACAACCCTGA
TGGTGCACCATGATGAGCGCGGGGCCGGGTTTTATTGCGTGGGCTACGCG
CGGGCAAGGGGACGACCAGCTGCTGTGATAGTCACGTCGGGCACCGCCGT
TGCCAATCTTCTGCCTGCAGCAGTAGAAGCAGCGACGGACCGTGTCCCTC
TTCTGCTGCTCACTGCTGACCGTCCTCCAGAACAAAGGGATTGTGGGGCT
AATCAGACAGTAGCTCAACCGAACATGTTTTTAAATTTTGCTCGTTGGTC
GAAAGATATGCCCTGTCCCACCCACGAGGTCCTCGCTTCCTCCCTTTTGT
CCGACATTGATTACGCAGTCAGCATGGCCCGGGGGGTGGATCCTGGGCCC
GTCCATCTGAATTTCATGTTGAGGGAGAATTTGGCGCCGGAGGGGGGAGC
AGTGAGGGATACAGCAGTGCCAGGATTACATTCTGAGTGGCCTGACGCAT
TAGTGCAGACTCTGCAGGCGCGGCTCCGCTGGCAAGTGTCGCTATGAATG
GCGAGTCAAAAAGACCGTTTCGAGAATAGGGTGACTGCGGAGAGTATTGA
GGAGGCCTTGAGCCCGTTGGTGGAGGGAGGGCGAGAGGGGGTGAAGAGAT
TTCCTGCCTTTGTCCTGAGGCTGCAGCATGTCCAGCATATTTGTCACAAA
ATCTCGGCGAGACTCCTGAAGAGGACGAGAAGGAGGAAGAACGAAGAGGA
GGAAGGGGAGGAGGAAGGGGAGGAGGGCACTTCCTCCTCCGCCTTTGACT
TGCTGGCCGCCCTTCACCCCACCCCCGCCGTGGCAGGCGAGCCCCGCTTG
ACAGCCCTGCAAGCAATCCGCCAGCTTGAGCCTTTTGACCGGGGGTTCTA
TGCCGGTCCTGTCGGATTTCTCTCGCCCGCCTGTGCTGAATTCGCGGTTG
CCATCCGCTCGGTTCTAATCGTGCGAGAACGCGCCCACGTTTTTGCAGGG
GCAGGAATCGTCCCCGGCTCTACCGCAGAAGGAGAATGGGCCGAAATTGG
TGCCAAAATGGCAAATTTCGTGCGAATGTTTCCTCGTCCGTCGCAGCCGT
TGCGGAGTCTGCCCAATTTGGCCACGCTGTGGGCAACGCTTGTGGTCGAG
GAGTTGGTCAGGAATGGAGTGACTCACTTTGTTATTGCCCCGGGATCGAG
GTCCACCCCCCTGGTGACGGCAGCGGCGAGGCATCCACATACAACCCTGA
TGGTGCACCATGATGAGCGCGGGGCCGGGTTTTATTGCGTGGGCTACGCG
CGGGCAAGGGGACGACCAGCTGCTGTGATAGTCACGTCGGGCACCGCCGT
TGCCAATCTTCTGCCTGCAGCAGTAGAAGCAGCGACGGACCGTGTCCCTC
TTCTGCTGCTCACTGCTGACCGTCCTCCAGAACAAAGGGATTGTGGGGCT
AATCAGACAGTAGCTCAACCGAACATGTTTTTAAATTTTGCTCGTTGGTC
GAAAGATATGCCCTGTCCCACCCACGAGGTCCTCGCTTCCTCCCTTTTGT
CCGACATTGATTACGCAGTCAGCATGGCCCGGGGGGTGGATCCTGGGCCC
GTCCATCTGAATTTCATGTTGAGGGAGAATTTGGCGCCGGAGGGGGGAGC
AGTGAGGGATACAGCAGTGCCAGGATTACATTCTGAGTGGCCTGACGCAT back to top
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