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Properties
| Property Name | Value |
|---|
| Product | d-3-phosphoglycerate dehydrogenase |
| Orig transcript id | gnl|cribi|Naga_100201g13.6911.mrna |
| Orig protein id | gnl|cribi|Naga_100201g13.6911 |
| Gene | PGDH |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037256.1 | supercontig | KK037256.1:185796..189147 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9822 ID=rna9822|Name=rna9822|organism=Nannochloropsis gaditana|type=mRNA|length=2239bp
CTCCCTCCCTCCCTTCCTCCCTCTCTTAGGTCACGGGCGACGTGATTGCC
GCAGCGGAGAAGCTGGTGGTGATAGGGAGGGCCGGTGTGGGGGTTGACAA
CATCGACCTGCGTGCTGCCACCAAGAAAGGGGTCATGGTCATGAATACGC
CCGGTGGGAACACGGTGTCCACCGCCCAACTCGCCTTCTCCCTCCTGGCC
GTCTCCGCCCGCTCTTTGGCGCGAGCAGACATGTCCATGAAGGCAGGAAA
GTGGGAGCGGAGCAAGTTGATGGGCACGGAGCTGGCAGGGAAGACCTTGG
CCGTGGTGGGCTGCGGCCGGATCGGGCAGCAGGTGGCGAAATGGGGGCAG
GCTTTTGACATGAAGGTGGTGGGCTTTGATCCTGTTCTTCCGGCAGCGGC
CTTTAAGGAGCTGGGCATCCAGAAGTGCGACCTGGAGAAAGTCTGGCCCC
AGGCCGACTTCATCACCCTCCACACCCCCCTGACGCCGGACACCAAGAAC
CTGATCAACCGGGAGAGCTTGCAGCAGATGAAGAAAGGCGTGCACATCAT
CAACTGCGCCCGGGGGGGGATCGTCCACGAGATGGACCTGCTCGAGGCCC
TGGAGGCGGGTCACGTGGGCGGGGCGGCCTTGGACGTGTACGAGAAGGAG
CCTCCGGGGGAGAGCACCAAGAAGCTCTTGGCCCATCCCAACGTCTCGTG
CACCCCCCACTTGGGGGCGAGCACGGAGGAGGCGCAGGTGAACGTGGCCA
AGGACATTGCCGTCCAGATGTGCGACACGCTCGAGAGCAAGGACTTCGTG
GGCGTCTGCAACGTCGGCTACATGTCCATCGCCCAGAACCACGCCATCCG
CCCGTACGCGGACTTGGCCCAGCAGCTCGGACGCGTGGCCACTCAATTCG
CCATGGGCACGGTCTGGAAGATCACCTTGGCGTCCTGGGGCCAGACGGAC
ATCTCCATCACCAGCCCCGACGCCCGCGCCCTCTTGAAGGCTCAGGCCTT
GGTCGGCTTCCTCTCCACGCAGGACACGCACGGGACACTTCCGGGTATCG
TCAACGCCCCCTTTCTGGCGGAGGAGCTGGGGGTGGAGACAGAGGCGCTG
ACGGAGGCCCCGGCCTTGGCCTCGGCGGCCTCCCCCTACCGGAGCTTGAT
CACCGTGGTGGCCCATGTGGAGGGGGGGGGCGCCACGTCGGTGACGGGCT
CGGTCTTTGGCCACGAGCCTTGCCTGGTCAGCTTGGATCACTACAAGAAC
TTCCCCGCGCTCAACCTCCACGAGGGCTCCGTGCTCAAATTCAGGAACAA
GGTAGGGAGGGCGGGAGAGCGGGAGGGAAGGCGGGAGGGAGGGCGGGCCG
GCGAGCGGGCCGTCGGGTCGTGTATACGCGTGGCTTGCCCCTCGATCCTG
CCTTTGGCTTCCACTACCTCGCTCCATGTCCGCATTCGGCCGTGCCAGGG
GGCGCCCGTCGCCTCTGCGCAATCTCGGACACGGGATCTTTCCTCTATCT
CCCCCCTCCCCTCTGTCTGGCGACCAGCCCATCGCTTCCTTTTTACCGGG
GAAGGCCTCCGAGAGAGAGGGAACGATCGTACCCTCCATGCGCTTTGATA
GAGAGGTCTAAACGCTCATTCTTTCCCCCGCCACGTCACAGGACGAGCCA
GGGGCCATTTCAGGGGTGTTGGACGTGTTGGAGGAGCACAAGGTGAACGT
GGCCAACCTGACCCTGGGGCGTCAGGAGACGGACCTGGCCTTGTGCCTGA
TGAGCGTGGACGGAGAGGTTCCGGCCCCCGCGTTGGAGAAGCTGCGGGCC
CTGGCACAGCTCAAGGATGTGCGGACCGCCAGGTTGGGGGGAAAGTAGGG
AGGGGGGAAGAAAGGCGAGGGAGAGGGAAGGATCGAGGAGGCGCTAGAGG
CAGTTGAGGGATGAGGTAGGTAGTGACAGGGAGAGGGGGAGGTGGGGCCC
AAGGAAGTTGGAGGACGGAGCGAAGGGGTGGGATATATCATGGAGAGGAT
GTCGGTGGAAACAGTTTTGAATCCCAGGTGAGAGACGCAAAGCGGAAATG
TCATTATGGGCTCGAAGAATCAATGCGATGCATGTGCCCTCGGGAGATAG
AGCGAAAGCAAAGAAGGAGGGGGACAAAGAGGGAGCGAGAGCGAAACGGA
GATGCGGTGAAGTGAAAGGGAAGTGGTGATGGGATGGGAAGAGAAGACAG
TTTAAGTATGAAGAAAGAAAGGAGAGAAATTTTGAGAAT back to topprotein sequence of rna9822 >rna9822-protein ID=rna9822-protein|Name=rna9822|organism=Nannochloropsis gaditana|type=polypeptide|length=412bp
MKVVGFDPVLPAAAFKELGIQKCDLEKVWPQADFITLHTPLTPDTKNLIN
RESLQQMKKGVHIINCARGGIVHEMDLLEALEAGHVGGAALDVYEKEPPG
ESTKKLLAHPNVSCTPHLGASTEEAQVNVAKDIAVQMCDTLESKDFVGVC
NVGYMSIAQNHAIRPYADLAQQLGRVATQFAMGTVWKITLASWGQTDISI
TSPDARALLKAQALVGFLSTQDTHGTLPGIVNAPFLAEELGVETEALTEA
PALASAASPYRSLITVVAHVEGGGATSVTGSVFGHEPCLVSLDHYKNFPA
LNLHEGSVLKFRNKVGRAGEREGRREGGRAGERAVGSCIRVACPSILPLA
STTSLHVRIRPCQGAPVASAQSRTRDLSSISPLPSVWRPAHRFLFTGEGL
RERGNDRTLHAL back to topmRNA from alignment at KK037256.1:185796..189147- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9822 ID=rna9822|Name=rna9822|organism=Nannochloropsis gaditana|type=mRNA|length=3352bp|location=Sequence derived from alignment at KK037256.1:185796..189147- (Nannochloropsis gaditana)
CTCCCTCCCTCCCTTCCTCCCTCTCTTAGGTCACGGGCGACGTGATTGCC
GCAGCGGAGAAGCTGGTGGTGATAGGGAGGGCCGGTGTGGGGGTTGACAA
CATCGACCTGCGTGCTGCCACCAAGAAAGGGGTCATGGTCATGAATACGC
CCGGTGCGTTCTCCGACCCTTTGTCACGCCCTCCCTGCCTCAGCGCCCTC
CTTTGCTCCCTCCCGTCCTCCCATCCTTGTACAAAAGAGACTACTTGTAT
GCCATCTATCCGGGCTCACATCACCAGTCGCTTTCGGTTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCCGCCTCCCTCCCCAGGTGGGAA
CACGGTGTCCACCGCCCAACTCGCCTTCTCCCTCCTGGCCGTCTCCGCCC
GCTCTTTGGCGCGAGCAGACATGTCCATGAAGGCAGGAAAGTGGGAGCGG
AGCAAGTTGATGGGCACGGAGCTGGCAGGGAAGACCTTGGCCGTGGTGGG
CTGCGGCCGGATCGGGCAGCAGGTGGCGAAATGGGGGCAGGTAGGTAGGT
AGGTAGGGAGGGAGGGAGGGAGGGAGGTAGGGATTTCCTGGGAGGGTACG
GGAAAGAGGGTCTACGGACGGGATGTAGGGATGGCTAGGGCCAGCAGATG
GGAAGATGACCCGGAGGGAGGGAGGGAGGGAGGGAGGGAAAGAGGGAAAG
AGGGAAAGAGGGAGGGAGGGAGGGAGGATGGATTGTGGGATCGATTTAGG
CGTACCGAAGAAAGCGCAGAGGGAAAGGGGCAGGAAGGGAAGTCTTGTAG
TCCCAGGACGGGCGCCATGTCACCTGTCCTCCCTCCTTCCCGCCCTGCCC
CCCGCCCTCGCTCCTGCCCTCCCTCCCCCCCTAGGCTTTTGACATGAAGG
TGGTGGGCTTTGATCCTGTTCTTCCGGCAGCGGCCTTTAAGGTGAAGAGG
GAGGGAGGGAGGGAGGGAGAAAGAGAGAAAGGGAGGGAAGGAAGGATGGA
TTGGCTCTGAAGCCTCCATCCTCTTCCTTGATCCCAGGCGTCCATCACCA
TCTGGCAGGCTTCCTCCCTTCCCCGTCCCGAGTCCAAATTTAAAATCAAA
CTCAAATTATCCCCCCCCTCCCTCTGTCCCCCTCTTACCCTCCTTCTAGG
AGCTGGGCATCCAGAAGTGCGACCTGGAGAAAGTCTGGCCCCAGGCCGAC
TTCATCACCCTCCACACCCCCCTGACGCCGGACACCAAGAACCTGATCAA
CCGGGAGAGCTTGCAGCAGATGAAGAAAGGCGTGCACATCATCAACTGCG
CCCGGGGGGGGATCGTCCACGAGATGGACCTGCTCGAGGCCCTGGAGGCG
GGTCACGTGGGCGGGGCGGCCTTGGACGTGTACGAGAAGGAGCCTCCGGG
GGAGAGCACCAAGAAGCTCTTGGCCCATCCCAACGTCTCGTGCACCCCCC
ACTTGGGGGCGAGCACGGAGGAGGCGCAGGTGAACGTGGCCAAGGACATT
GCCGTCCAGATGTGCGACACGCTCGAGAGCAAGGTCAGGCCCTCCCTCTC
CCCCGCCCTCCCTCCTTCCCGCCCTCCCTCCCTCCCCCCCTTCCGCTTCG
AGGGGCTGGGTCCGTTCGGCCCTCCGTTTCCTCCCTCGCCCCTCCCCCTG
GGCTTTGCTCATGGACCGTTCCAACCACATCCCTCCATCCTTCCCTCCCT
CCCTCCCTCCCTCCTCCCTCCCCAGGACTTCGTGGGCGTCTGCAACGTCG
GCTACATGTCCATCGCCCAGAACCACGCCATCCGCCCGTACGCGGACTTG
GCCCAGCAGCTCGGACGCGTGGCCACTCAATTCGCCATGGGCACGGTCTG
GAAGATCACCTTGGCGTCCTGGGGCCAGACGGACATCTCCATCACCAGCC
CCGACGCCCGCGCCCTCTTGAAGGCTCAGGCCTTGGTCGGCTTCCTCTCC
ACGCAGGACACGCACGGGACACTTCCGGGTATCGTCAACGCCCCCTTTCT
GGCGGAGGAGCTGGGGGTGGAGACAGAGGCGCTGACGGAGGCCCCGGCCT
TGGCCTCGGCGGCCTCCCCCTACCGGAGCTTGATCACCGTGGTGGCCCAT
GTGGAGGGGGGGGGCGCCACGTCGGTGACGGGCTCGGTCTTTGGCCACGA
GCCTTGCCTGGTCAGCTTGGATCACTACAAGAACTTCCCCGCGCTCAACC
TCCACGAGGGCTCCGTGCTCAAATTCAGGAACAAGGTAGGGAGGGCGGGA
GAGCGGGAGGGAAGGCGGGAGGGAGGGCGGGCCGGCGAGCGGGCCGTCGG
GTCGTGTATACGCGTGGCTTGCCCCTCGATCCTGCCTTTGGCTTCCACTA
CCTCGCTCCATGTCCGCATTCGGCCGTGCCAGGGGGCGCCCGTCGCCTCT
GCGCAATCTCGGACACGGGATCTTTCCTCTATCTCCCCCCTCCCCTCTGT
CTGGCGACCAGCCCATCGCTTCCTTTTTACCGGGGAAGGCCTCCGAGAGA
GAGGGAACGATCGTACCCTCCATGCGCTTTGATAGAGAGGTCTAAACGCT
CATTCTTTCCCCCGCCACGTCACAGGACGAGCCAGGGGCCATTTCAGGGG
TGTTGGACGTGTTGGAGGAGCACAAGGTGGGGAGGGAAGTAGGGAGGGAG
GGAGGGAGGGAGGAAAAGCCCCCTCAATAGGTTCTCGACGCGTGTGTGAC
GACAATTATGCACGCCACCTCCCTTTATCCCCCTCCCTCACGCCTCCCAC
TCCCTCCTTCCTTCCTTTCCTCCCTCTTCCCCTCCTTCCCTCCTACCCTA
CTTAGGTGAACGTGGCCAACCTGACCCTGGGGCGTCAGGAGACGGACCTG
GCCTTGTGCCTGATGAGCGTGGACGGAGAGGTTCCGGCCCCCGCGTTGGA
GAAGCTGCGGGCCCTGGCACAGCTCAAGGATGTGCGGACCGCCAGGTTGG
GGGGAAAGTAGGGAGGGGGGAAGAAAGGCGAGGGAGAGGGAAGGATCGAG
GAGGCGCTAGAGGCAGTTGAGGGATGAGGTAGGTAGTGACAGGGAGAGGG
GGAGGTGGGGCCCAAGGAAGTTGGAGGACGGAGCGAAGGGGTGGGATATA
TCATGGAGAGGATGTCGGTGGAAACAGTTTTGAATCCCAGGTGAGAGACG
CAAAGCGGAAATGTCATTATGGGCTCGAAGAATCAATGCGATGCATGTGC
CCTCGGGAGATAGAGCGAAAGCAAAGAAGGAGGGGGACAAAGAGGGAGCG
AGAGCGAAACGGAGATGCGGTGAAGTGAAAGGGAAGTGGTGATGGGATGG
GAAGAGAAGACAGTTTAAGTATGAAGAAAGAAAGGAGAGAAATTTTGAGA
AT back to topCoding sequence (CDS) from alignment at KK037256.1:185796..189147- >rna9822 ID=rna9822|Name=rna9822|organism=Nannochloropsis gaditana|type=CDS|length=3717bp|location=Sequence derived from alignment at KK037256.1:185796..189147- (Nannochloropsis gaditana)
GACTTCGTGGGCGTCTGCAACGTCGGCTACATGTCCATCGCCCAGAACCA
CGCCATCCGCCCGTACGCGGACTTGGCCCAGCAGCTCGGACGCGTGGCCA
CTCAATTCGCCATGGGCACGGTCTGGAAGATCACCTTGGCGTCCTGGGGC
CAGACGGACATCTCCATCACCAGCCCCGACGCCCGCGCCCTCTTGAAGGC
TCAGGCCTTGGTCGGCTTCCTCTCCACGCAGGACACGCACGGGACACTTC
CGGGTATCGTCAACGCCCCCTTTCTGGCGGAGGAGCTGGGGGTGGAGACA
GAGGCGCTGACGGAGGCCCCGGCCTTGGCCTCGGCGGCCTCCCCCTACCG
GAGCTTGATCACCGTGGTGGCCCATGTGGAGGGGGGGGGCGCCACGTCGG
TGACGGGCTCGGTCTTTGGCCACGAGCCTTGCCTGGTCAGCTTGGATCAC
TACAAGAACTTCCCCGCGCTCAACCTCCACGAGGGCTCCGTGCTCAAATT
CAGGAACAAGGTAGGGAGGGCGGGAGAGCGGGAGGGAAGGCGGGAGGGAG
GGCGGGCCGGCGAGCGGGCCGTCGGGTCGTGTATACGCGTGGCTTGCCCC
TCGATCCTGCCTTTGGCTTCCACTACCTCGCTCCATGTCCGCATTCGGCC
GTGCCAGGGGGCGCCCGTCGCCTCTGCGCAATCTCGGACACGGGATCTTT
CCTCTATCTCCCCCCTCCCCTCTGTCTGGCGACCAGCCCATCGCTTCCTT
TTTACCGGGGAAGGCCTCCGAGAGAGAGGGAACGATCGTACCCTCCATGC
GCTTTGAGAGCTGGGCATCCAGAAGTGCGACCTGGAGAAAGTCTGGCCCC
AGGCCGACTTCATCACCCTCCACACCCCCCTGACGCCGGACACCAAGAAC
CTGATCAACCGGGAGAGCTTGCAGCAGATGAAGAAAGGCGTGCACATCAT
CAACTGCGCCCGGGGGGGGATCGTCCACGAGATGGACCTGCTCGAGGCCC
TGGAGGCGGGTCACGTGGGCGGGGCGGCCTTGGACGTGTACGAGAAGGAG
CCTCCGGGGGAGAGCACCAAGAAGCTCTTGGCCCATCCCAACGTCTCGTG
CACCCCCCACTTGGGGGCGAGCACGGAGGAGGCGCAGGTGAACGTGGCCA
AGGACATTGCCGTCCAGATGTGCGACACGCTCGAGAGCAAGATGAAGGTG
GTGGGCTTTGATCCTGTTCTTCCGGCAGCGGCCTTTAAGGACTTCGTGGG
CGTCTGCAACGTCGGCTACATGTCCATCGCCCAGAACCACGCCATCCGCC
CGTACGCGGACTTGGCCCAGCAGCTCGGACGCGTGGCCACTCAATTCGCC
ATGGGCACGGTCTGGAAGATCACCTTGGCGTCCTGGGGCCAGACGGACAT
CTCCATCACCAGCCCCGACGCCCGCGCCCTCTTGAAGGCTCAGGCCTTGG
TCGGCTTCCTCTCCACGCAGGACACGCACGGGACACTTCCGGGTATCGTC
AACGCCCCCTTTCTGGCGGAGGAGCTGGGGGTGGAGACAGAGGCGCTGAC
GGAGGCCCCGGCCTTGGCCTCGGCGGCCTCCCCCTACCGGAGCTTGATCA
CCGTGGTGGCCCATGTGGAGGGGGGGGGCGCCACGTCGGTGACGGGCTCG
GTCTTTGGCCACGAGCCTTGCCTGGTCAGCTTGGATCACTACAAGAACTT
CCCCGCGCTCAACCTCCACGAGGGCTCCGTGCTCAAATTCAGGAACAAGG
TAGGGAGGGCGGGAGAGCGGGAGGGAAGGCGGGAGGGAGGGCGGGCCGGC
GAGCGGGCCGTCGGGTCGTGTATACGCGTGGCTTGCCCCTCGATCCTGCC
TTTGGCTTCCACTACCTCGCTCCATGTCCGCATTCGGCCGTGCCAGGGGG
CGCCCGTCGCCTCTGCGCAATCTCGGACACGGGATCTTTCCTCTATCTCC
CCCCTCCCCTCTGTCTGGCGACCAGCCCATCGCTTCCTTTTTACCGGGGA
AGGCCTCCGAGAGAGAGGGAACGATCGTACCCTCCATGCGCTTTGAGAGC
TGGGCATCCAGAAGTGCGACCTGGAGAAAGTCTGGCCCCAGGCCGACTTC
ATCACCCTCCACACCCCCCTGACGCCGGACACCAAGAACCTGATCAACCG
GGAGAGCTTGCAGCAGATGAAGAAAGGCGTGCACATCATCAACTGCGCCC
GGGGGGGGATCGTCCACGAGATGGACCTGCTCGAGGCCCTGGAGGCGGGT
CACGTGGGCGGGGCGGCCTTGGACGTGTACGAGAAGGAGCCTCCGGGGGA
GAGCACCAAGAAGCTCTTGGCCCATCCCAACGTCTCGTGCACCCCCCACT
TGGGGGCGAGCACGGAGGAGGCGCAGGTGAACGTGGCCAAGGACATTGCC
GTCCAGATGTGCGACACGCTCGAGAGCAAGATGAAGGTGGTGGGCTTTGA
TCCTGTTCTTCCGGCAGCGGCCTTTAAGGACTTCGTGGGCGTCTGCAACG
TCGGCTACATGTCCATCGCCCAGAACCACGCCATCCGCCCGTACGCGGAC
TTGGCCCAGCAGCTCGGACGCGTGGCCACTCAATTCGCCATGGGCACGGT
CTGGAAGATCACCTTGGCGTCCTGGGGCCAGACGGACATCTCCATCACCA
GCCCCGACGCCCGCGCCCTCTTGAAGGCTCAGGCCTTGGTCGGCTTCCTC
TCCACGCAGGACACGCACGGGACACTTCCGGGTATCGTCAACGCCCCCTT
TCTGGCGGAGGAGCTGGGGGTGGAGACAGAGGCGCTGACGGAGGCCCCGG
CCTTGGCCTCGGCGGCCTCCCCCTACCGGAGCTTGATCACCGTGGTGGCC
CATGTGGAGGGGGGGGGCGCCACGTCGGTGACGGGCTCGGTCTTTGGCCA
CGAGCCTTGCCTGGTCAGCTTGGATCACTACAAGAACTTCCCCGCGCTCA
ACCTCCACGAGGGCTCCGTGCTCAAATTCAGGAACAAGGTAGGGAGGGCG
GGAGAGCGGGAGGGAAGGCGGGAGGGAGGGCGGGCCGGCGAGCGGGCCGT
CGGGTCGTGTATACGCGTGGCTTGCCCCTCGATCCTGCCTTTGGCTTCCA
CTACCTCGCTCCATGTCCGCATTCGGCCGTGCCAGGGGGCGCCCGTCGCC
TCTGCGCAATCTCGGACACGGGATCTTTCCTCTATCTCCCCCCTCCCCTC
TGTCTGGCGACCAGCCCATCGCTTCCTTTTTACCGGGGAAGGCCTCCGAG
AGAGAGGGAACGATCGTACCCTCCATGCGCTTTGAGAGCTGGGCATCCAG
AAGTGCGACCTGGAGAAAGTCTGGCCCCAGGCCGACTTCATCACCCTCCA
CACCCCCCTGACGCCGGACACCAAGAACCTGATCAACCGGGAGAGCTTGC
AGCAGATGAAGAAAGGCGTGCACATCATCAACTGCGCCCGGGGGGGGATC
GTCCACGAGATGGACCTGCTCGAGGCCCTGGAGGCGGGTCACGTGGGCGG
GGCGGCCTTGGACGTGTACGAGAAGGAGCCTCCGGGGGAGAGCACCAAGA
AGCTCTTGGCCCATCCCAACGTCTCGTGCACCCCCCACTTGGGGGCGAGC
ACGGAGGAGGCGCAGGTGAACGTGGCCAAGGACATTGCCGTCCAGATGTG
CGACACGCTCGAGAGCAAGATGAAGGTGGTGGGCTTTGATCCTGTTCTTC
CGGCAGCGGCCTTTAAG back to top
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