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Properties
| Property Name | Value |
|---|
| Product | ribonucleoprotein LSM |
| Orig transcript id | gnl|cribi|Naga_100012g36.1930.mrna |
| Orig protein id | gnl|cribi|Naga_100012g36.1930 |
| Gene | Lsm5 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037251.1 | supercontig | KK037251.1:295743..296313 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9084 ID=rna9084|Name=rna9084|organism=Nannochloropsis gaditana|type=mRNA|length=2190bp
CATGACATAATGATCGACCTGCTCTATTCAACAGGTAAGCTCTGAGAGGA
CTTCTTCAAAGACGGTATATAAGCACTTTACTAGGGAGTGTTCGAGTCTA
AAATCAACCGAATTCAATCAAGCTCTTAACGTCATGGTCAACATTGCCAA
AACGTCTGTGCTTCTTCTGGGAACATTCAGTGCTGTTGCGATCGCTTCGG
GAGAGCCACCGGCGCTCCTACGACCTCAAGGGCGGCTGCAACAAGAGGAT
TCAACACAAGAATCACATCCAGGTATCGAATTTCCTGAATCCCTTGCAAG
AAGTAATTATGGTGATAGTCAGCCGCGATCTGCCTACGAAAGCGTTTCGG
TTGGGGACGATGGAAGCATAAGACCTCTTTATACAAACGCCAACGCTGAC
ACGCATGGTGTTCAACGACCTACCCATGATGATTCTGCATCCAAGAGCTT
GACACAAGAGGACGTATCTCTTATATTCGAGCTAGCTTCTGGCAACGCTT
CAATAGACAGCAACTTGCAGGGCAGTGGAATAGGAGATAAAGCCATCACA
GCGACTTCCTTGGTCATGGAACATTTCGTCGCCGCCTTTGAAAATTACAG
AAGACATCTGTCAGGCATTAGCAAGCTCTTTCCTTGGGCGGGTGTCATAG
AGTTTCTTGTCAGTGTCAATGCTGTTTGTCCCATCGTTGACTTTGTTGAG
ACTATTGTAGCCGTTAACCTGCCTAGTGTCCGCATTCAAACTACCCAAGA
GTACCCTCAAAACCCTGACGGGACTTTACCTCGCCCTTGGAAGGACTTAA
AGGGATGTGACGCCTGGTTTGTGGATGAGGATACCATCCGCGCAGAAAAG
GCTTCGTATTATTACGTCTACCGCATGTATGATACATTCTACGCCTACGC
GACCGACACAGCGGAAGACAAGGAGCTGCTCGACCCTCTTGCACCCGGGT
GGGGTCCTCAGACGGTGCACTTTCGAAATGCCACCTCCGTCGGCGGTCAA
TGGCGGGAAAGTCCGTTCTCTGTTGTTACAGAAAAAGATGGACATGTGCT
GGTGGCGATGCGGGGCACTATGTATCAAGACGAATATCGCGCAAGCTCGA
TATACGAGTTTACTGAGCCCAACGAGACCGTGCCATACTTTGAGGGGAAG
GTCCATTCAGGGGCTTTTCAACTTTTCAAAGAGATGCTCCCACCTCTACT
GCAGGACATTAAGTCGCGGAGTCCGAACAAAGTGACCCTGATCGGACACA
GCGTTGGTGGTGTCATCGCTACCATGCTGGGCGCGTACCTAGGCCGGCTC
GATGCGAAGGAATGGGGAGTAAAAGAGGAAGGGGCAGAGAGAGGGAAGGG
AATGGAGGTGGAGGTATTAACAGTGGGAGCCTACGCGCCAGGGGACCGGG
AGTTCTGGGAGAAGGCGAAGGGCGGCATGAATGTAAGGAACATTCGATAT
CTAGGAGAGGGATGGATAGAAGATGGGTTGGACGCACCAGGGAAAATGTA
TACGATGGGCGATGTTGTCGCTCAAGCCCCTGGGGTTCCCTTGCCCACGT
GCATGCATTCCTCAAGCGGGAATGAGACGCTGTGGGGCGTGCACAAAGAC
GCAGGCTGGTTCGACTACTACATGCCTCCGTGCACCGTCGCCATTTACCC
AACCTCCATAAAGAATACGGCGGCTTGGCGCGATAAGACCAACATGCTCG
ACCCCGCGAGGATGGCGGTGGTCTTGAGCCACAAGTGCCCTTACACCTGC
TGGCTGACGGACGGCATGGGCGACCCGAATACACGCTGCTACTTTCAGGA
GCAGCGGGAGGTGCAGCAGCAGGGTATCAGAGCCTGGATAGGTTCATTGT
GGAAAAAAGGCGGAAAAGGGGGGAAGGGCATGGCTCTAAGGGATGGGGAA
ATCTGTCGGAGGACGGAGGCTGACCTTTACGCGGACTTGGACTTGACGAG
GGATCCCCGGATAAGAGGAAGCATTGGCCAAGGTTGATAGGGGAGGATCG
AGTGGATGCAAAGTAGGGATTTGGCTGGTAGTATGTGAAGAGACTTACGA
TTCTCGTGTATAAGCATAAGAAGAAATAAGCTCATTCGTAATCTCACACA
ACTCTCTGAGTGATCAAGGGTGCAGTACAGTGAGATTTTATAAAGGCACC
ACGCTCTGCTCAATAGAACAACGAAAACTCAGAGATATCC back to topprotein sequence of rna9084 >rna9084-protein ID=rna9084-protein|Name=rna9084|organism=Nannochloropsis gaditana|type=polypeptide|length=147bp
MAGRLLPLELVDKCIGSRLWVIMKGDQELVGTLKSFDDYVNMVLEDVTEY
EVTPEGKVAHKLDQILLNGNNIAILVPGRSPEDGRLVRFVGRREHDVHLM
KCQFLWECVEATATRFPTLDMVLPGLNWGGSPRICSILRKNRQRHTA back to topmRNA from alignment at KK037251.1:295743..296313- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9084 ID=rna9084|Name=rna9084|organism=Nannochloropsis gaditana|type=mRNA|length=571bp|location=Sequence derived from alignment at KK037251.1:295743..296313- (Nannochloropsis gaditana)
ATGGCAGGGCGTTTGCTGCCGCTTGAGCTTGTGGACAAATGCATCGGGTC
TCGCCTGTGGGTCATCATGAAGGGCGACCAAGAGCTGGTGGGAACCCTGA
AGAGCTTCGACGACTACGTGAACATGGTTTTGGAAGATGTTACCGAGTAC
GAAGTGACTCCGGAGGGAAAAGTCGCGCATAAACTAGATCAGATCTTGTT
GAACGGTAACAACATCGCTATACTGGTCCCAGGGCGGTCACCAGAAGATG
GGTGAATACGACAAGCCTTGTCGGTGGTGCAGCTCTGCAAACGAAGGCGA
CTAGTAAGATTTGTTGGGCGCCGGGAGCATGATGTGCATCTTATGAAATG
CCAATTTCTGTGGGAGTGCGTCGAAGCTACCGCGACCCGCTTTCCGACGC
TTGTCTGCGCTTGACAATTCGCCACCTGCCGACAATGCTGCTGATAATGC
CTAAGGATTCTGCTGAATATCGAATATAAATGAGGATATGGTTTTGCCAG
GGCTGAATTGGGGTGGTAGTCCACGGATTTGTAGCATACTAAGGAAAAAC
AGACAACGCCATACTGCTTAA back to topCoding sequence (CDS) from alignment at KK037251.1:295743..296313- >rna9084 ID=rna9084|Name=rna9084|organism=Nannochloropsis gaditana|type=CDS|length=1332bp|location=Sequence derived from alignment at KK037251.1:295743..296313- (Nannochloropsis gaditana)
GATATGGTTTTGCCAGGGCTGAATTGGGGTGGTAGTCCACGGATTTGTAG
CATACTAAGGAAAAACAGACAACGCCATACTGCTTAAGCGACTAGTAAGA
TTTGTTGGGCGCCGGGAGCATGATGTGCATCTTATGAAATGCCAATTTCT
GTGGGAGTGCGTCGAAGCTACCGCGACCCGCTTTCCGACGCTTATGGCAG
GGCGTTTGCTGCCGCTTGAGCTTGTGGACAAATGCATCGGGTCTCGCCTG
TGGGTCATCATGAAGGGCGACCAAGAGCTGGTGGGAACCCTGAAGAGCTT
CGACGACTACGTGAACATGGTTTTGGAAGATGTTACCGAGTACGAAGTGA
CTCCGGAGGGAAAAGTCGCGCATAAACTAGATCAGATCTTGTTGAACGGT
AACAACATCGCTATACTGGTCCCAGGGCGGTCACCAGAAGATGGGATATG
GTTTTGCCAGGGCTGAATTGGGGTGGTAGTCCACGGATTTGTAGCATACT
AAGGAAAAACAGACAACGCCATACTGCTTAAGCGACTAGTAAGATTTGTT
GGGCGCCGGGAGCATGATGTGCATCTTATGAAATGCCAATTTCTGTGGGA
GTGCGTCGAAGCTACCGCGACCCGCTTTCCGACGCTTATGGCAGGGCGTT
TGCTGCCGCTTGAGCTTGTGGACAAATGCATCGGGTCTCGCCTGTGGGTC
ATCATGAAGGGCGACCAAGAGCTGGTGGGAACCCTGAAGAGCTTCGACGA
CTACGTGAACATGGTTTTGGAAGATGTTACCGAGTACGAAGTGACTCCGG
AGGGAAAAGTCGCGCATAAACTAGATCAGATCTTGTTGAACGGTAACAAC
ATCGCTATACTGGTCCCAGGGCGGTCACCAGAAGATGGGATATGGTTTTG
CCAGGGCTGAATTGGGGTGGTAGTCCACGGATTTGTAGCATACTAAGGAA
AAACAGACAACGCCATACTGCTTAAGCGACTAGTAAGATTTGTTGGGCGC
CGGGAGCATGATGTGCATCTTATGAAATGCCAATTTCTGTGGGAGTGCGT
CGAAGCTACCGCGACCCGCTTTCCGACGCTTATGGCAGGGCGTTTGCTGC
CGCTTGAGCTTGTGGACAAATGCATCGGGTCTCGCCTGTGGGTCATCATG
AAGGGCGACCAAGAGCTGGTGGGAACCCTGAAGAGCTTCGACGACTACGT
GAACATGGTTTTGGAAGATGTTACCGAGTACGAAGTGACTCCGGAGGGAA
AAGTCGCGCATAAACTAGATCAGATCTTGTTGAACGGTAACAACATCGCT
ATACTGGTCCCAGGGCGGTCACCAGAAGATGG back to top
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