EWM21598.1, cds9054 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21598.1 vs. NCBI_GenBank
Match: gi|585101853|gb|EWM21598.1| (ribonucleoprotein LSM [Nannochloropsis gaditana]) HSP 1 Score: 304.679 bits (779), Expect = 7.588e-105 Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0
Query: 1 MAGRLLPLELVDKCIGSRLWVIMKGDQELVGTLKSFDDYVNMVLEDVTEYEVTPEGKVAHKLDQILLNGNNIAILVPGRSPEDGRLVRFVGRREHDVHLMKCQFLWECVEATATRFPTLDMVLPGLNWGGSPRICSILRKNRQRHTA 147
MAGRLLPLELVDKCIGSRLWVIMKGDQELVGTLKSFDDYVNMVLEDVTEYEVTPEGKVAHKLDQILLNGNNIAILVPGRSPEDGRLVRFVGRREHDVHLMKCQFLWECVEATATRFPTLDMVLPGLNWGGSPRICSILRKNRQRHTA
Sbjct: 1 MAGRLLPLELVDKCIGSRLWVIMKGDQELVGTLKSFDDYVNMVLEDVTEYEVTPEGKVAHKLDQILLNGNNIAILVPGRSPEDGRLVRFVGRREHDVHLMKCQFLWECVEATATRFPTLDMVLPGLNWGGSPRICSILRKNRQRHTA 147
BLAST of EWM21598.1 vs. NCBI_GenBank
Match: gi|697097110|ref|XP_009619781.1| (PREDICTED: sm-like protein LSM5 [Nicotiana tomentosiformis] >gi|698473083|ref|XP_009784403.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Nicotiana sylvestris] >gi|1025245277|ref|XP_016487672.1| PREDICTED: sm-like protein LSM5 [Nicotiana tabacum] >gi|1025336918|ref|XP_016507205.1| PREDICTED: sm-like protein LSM5 [Nicotiana tabacum] >gi|1111069595|ref|XP_019240796.1| PREDICTED: sm-like protein LSM5 [Nicotiana attenuata]) HSP 1 Score: 134.806 bits (338), Expect = 1.358e-38 Identity = 64/79 (81.01%), Postives = 72/79 (91.14%), Query Frame = 0
Query: 4 RLLPLELVDKCIGSRLWVIMKGDQELVGTLKSFDDYVNMVLEDVTEYEVTPEGKVAHKLDQILLNGNNIAILVPGRSPE 82
+LLP EL+D+CIGS++WVIMKGD+ELVGTL+ FD YVNMVLEDVTEYE+TPEGK KLDQILLNGNNIAILVPG SPE
Sbjct: 8 QLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITPEGKRVTKLDQILLNGNNIAILVPGGSPE 86
BLAST of EWM21598.1 vs. NCBI_GenBank
Match: gi|299471840|emb|CBN77010.1| (Sm-like protein LSm5 [Ectocarpus siliculosus]) HSP 1 Score: 134.806 bits (338), Expect = 1.634e-38 Identity = 66/84 (78.57%), Postives = 75/84 (89.29%), Query Frame = 0
Query: 1 MAGRLLPLELVDKCIGSRLWVIMKGDQELVGTLKSFDDYVNMVLEDVTEYEVTPEG-KVAHKLDQILLNGNNIAILVPGRSPED 83
MA RLLPLEL+DKCIGSRLW+IMKGD+ELVGTL+ FDDYVNMVL+DVTEYEV +G K +LDQILLNGNN+A+LVPG SPED
Sbjct: 1 MAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEVDADGTKRRIQLDQILLNGNNVAMLVPGGSPED 84
BLAST of EWM21598.1 vs. NCBI_GenBank
Match: gi|727422124|ref|XP_010439778.1| (PREDICTED: sm-like protein LSM5 [Camelina sativa] >gi|727536460|ref|XP_010442339.1| PREDICTED: sm-like protein LSM5 isoform X1 [Camelina sativa]) HSP 1 Score: 134.806 bits (338), Expect = 1.727e-38 Identity = 64/82 (78.05%), Postives = 73/82 (89.02%), Query Frame = 0
Query: 4 RLLPLELVDKCIGSRLWVIMKGDQELVGTLKSFDDYVNMVLEDVTEYEVTPEGKVAHKLDQILLNGNNIAILVPGRSPEDGR 85
+LLP EL+D+CIGS++WVIMKGD+ELVGTLK FD YVNMVLEDVTEYE+T EG+ KLDQILLNGNNIAILVPG SP+DG
Sbjct: 7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPDDGE 88
BLAST of EWM21598.1 vs. NCBI_GenBank
Match: gi|297792081|ref|XP_002863925.1| (sm-like protein LSM5 [Arabidopsis lyrata subsp. lyrata] >gi|297309760|gb|EFH40184.1| hypothetical protein ARALYDRAFT_917817 [Arabidopsis lyrata subsp. lyrata]) HSP 1 Score: 134.035 bits (336), Expect = 2.765e-38 Identity = 64/82 (78.05%), Postives = 72/82 (87.80%), Query Frame = 0
Query: 4 RLLPLELVDKCIGSRLWVIMKGDQELVGTLKSFDDYVNMVLEDVTEYEVTPEGKVAHKLDQILLNGNNIAILVPGRSPEDGR 85
+LLP EL+D+CIGS++WVIMKGD+ELVG LK FD YVNMVLEDVTEYE+T EG+ KLDQILLNGNNIAILVPG SPEDG
Sbjct: 7 QLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPEDGE 88
BLAST of EWM21598.1 vs. NCBI_GenBank
Match: gi|15239727|ref|NP_199698.1| (Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana] >gi|75262597|sp|Q9FKB0.1|LSM5_ARATH RecName: Full=Sm-like protein LSM5; Short=AtLSM5; AltName: Full=Protein SUPERSENSITIVE TO ABA AND DROUGHT 1; Short=AtSAD1; AltName: Full=U6 snRNA-associated Sm-like protein LSM5 >gi|9758886|dbj|BAB09440.1| U6 snRNA-associated Sm-like protein-like [Arabidopsis thaliana] >gi|16554971|gb|AAK61592.1| Sm-like protein [Arabidopsis thaliana] >gi|106879147|gb|ABF82603.1| At5g48870 [Arabidopsis thaliana] >gi|332008352|gb|AED95735.1| Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana] >gi|386305005|gb|AFJ05005.1| hypothetical protein [Arabidopsis thaliana] >gi|1032281726|gb|OAO96054.1| SAD1 [Arabidopsis thaliana]) HSP 1 Score: 134.035 bits (336), Expect = 2.985e-38 Identity = 64/82 (78.05%), Postives = 72/82 (87.80%), Query Frame = 0
Query: 4 RLLPLELVDKCIGSRLWVIMKGDQELVGTLKSFDDYVNMVLEDVTEYEVTPEGKVAHKLDQILLNGNNIAILVPGRSPEDGR 85
+LLP EL+D+CIGS++WVIMKGD+ELVG LK FD YVNMVLEDVTEYE+T EG+ KLDQILLNGNNIAILVPG SPEDG
Sbjct: 7 QLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPEDGE 88
BLAST of EWM21598.1 vs. NCBI_GenBank
Match: gi|1173961581|gb|OQS07598.1| (hypothetical protein THRCLA_20104 [Thraustotheca clavata]) HSP 1 Score: 133.65 bits (335), Expect = 4.131e-38 Identity = 61/79 (77.22%), Postives = 72/79 (91.14%), Query Frame = 0
Query: 4 RLLPLELVDKCIGSRLWVIMKGDQELVGTLKSFDDYVNMVLEDVTEYEVTPEGKVAHKLDQILLNGNNIAILVPGRSPE 82
RLLPLEL+DKCIGSR+W+IMKGD+E VGTL+ FDDYVNMVL+DVTEYEVTPEGK ++DQ+LLNGNN+ +LVPG SPE
Sbjct: 5 RLLPLELIDKCIGSRIWIIMKGDKEFVGTLRGFDDYVNMVLDDVTEYEVTPEGKRKIQVDQVLLNGNNVCLLVPGGSPE 83
BLAST of EWM21598.1 vs. NCBI_GenBank
Match: gi|694415767|ref|XP_009336045.1| (PREDICTED: sm-like protein LSM5 [Pyrus x bretschneideri]) HSP 1 Score: 133.65 bits (335), Expect = 4.938e-38 Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 0
Query: 4 RLLPLELVDKCIGSRLWVIMKGDQELVGTLKSFDDYVNMVLEDVTEYEVTPEGKVAHKLDQILLNGNNIAILVPGRSPE 82
+LLP EL+D+CIGS++WVIMKGD+ELVGTL+ FD YVNMVLEDVTEYE+TPEG+ KLDQILLNGNNIAILVPG SPE
Sbjct: 8 QLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITPEGRRITKLDQILLNGNNIAILVPGGSPE 86
BLAST of EWM21598.1 vs. NCBI_GenBank
Match: gi|565430634|ref|XP_006279717.1| (hypothetical protein CARUB_v10027453mg [Capsella rubella] >gi|482548421|gb|EOA12615.1| hypothetical protein CARUB_v10027453mg [Capsella rubella]) HSP 1 Score: 133.265 bits (334), Expect = 5.331e-38 Identity = 63/82 (76.83%), Postives = 72/82 (87.80%), Query Frame = 0
Query: 4 RLLPLELVDKCIGSRLWVIMKGDQELVGTLKSFDDYVNMVLEDVTEYEVTPEGKVAHKLDQILLNGNNIAILVPGRSPEDGR 85
+LLP EL+D+C+GS++WVIMKGD+ELVG LK FD YVNMVLEDVTEYE+T EG+ KLDQILLNGNNIAILVPG SPEDG
Sbjct: 7 QLLPSELIDRCVGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPEDGE 88
BLAST of EWM21598.1 vs. NCBI_GenBank
Match: gi|657961707|ref|XP_008372449.1| (PREDICTED: sm-like protein LSM5 [Malus domestica] >gi|694314460|ref|XP_009371285.1| PREDICTED: sm-like protein LSM5 [Pyrus x bretschneideri]) HSP 1 Score: 133.265 bits (334), Expect = 5.947e-38 Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 0
Query: 4 RLLPLELVDKCIGSRLWVIMKGDQELVGTLKSFDDYVNMVLEDVTEYEVTPEGKVAHKLDQILLNGNNIAILVPGRSPE 82
+LLP EL+D+CIGS++WVIMKGD+ELVGTL+ FD YVNMVLEDVTEYE+TPEG+ KLDQILLNGNNIAILVPG SPE
Sbjct: 8 QLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITPEGRRITKLDQILLNGNNIAILVPGGSPE 86 The following BLAST results are available for this feature:
BLAST of EWM21598.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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