rna7879, rna7879 (mRNA) Nannochloropsis gaditana

Overview
Namerna7879
Unique Namerna7879
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1441
Alignment locationCM002475.1:59915..62221 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100437g2.4382.mrna
Orig protein idgnl|cribi|Naga_100437g2.4382
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002475.1supercontigCM002475.1:59915..62221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100437g2gene7632Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22815.1cds7857Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7879rna7879-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7879 ID=rna7879|Name=rna7879|organism=Nannochloropsis gaditana|type=mRNA|length=1441bp
AATATTCTGGAACCGGGACGCGTCGAGCACACTTGTTATCGCTCATTAGG
CGCCGACCTCGCTCTCGGGACACCCACACTCCTTTCCTTTTCCTGCCTTT
TCCGCCGCATGTTCAGGAGAACTTAAGGTGCTGGACGGTGTGGAGGGTGC
AGAGCTACTTCAAGCATGGGAAGAGGGACGTCTGGAGGTGCCGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAG
GAGGGAGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGGAGAAAC
TGAGACGATGAGTTTGGGTGAGAGTGGAGAGGAAGAGGACGAAGAGGGGC
TTGAGGACGATTGGGAGGAGGTGGAAGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAATGGATCGATGTGTCATCTGCCTCCGAAAACGGCGA
GGAGGAAGCGGGGGAGGGGAAGGAGGGGGTGGAGGATGGAGAGGAGGAGG
ACGGATCAGAAGAAGAAGAAGAAGAAGAGGAGGTCAAGGGAAGAGGGTTT
GGCGGCAACACGATGGGAGGGGAGGAAGTCAACAGGGAGGAGACCGTCGG
GAGCGAGAAAGGAGAAGGCGAAGAAGCTGTCCGGAACAGTCTCACCCCGA
CCCCACCTTTCCCGTCCACGCCTGTCCAGAGCAAGCGACTGAAACGCGCG
GCCAAGAGAGAGGCGGCCCATGCGGCCCGCCTACAGCGGCAGGAGAAGCG
GGCGAGTGCAGCCTTAACCTCCTTAATCCGCCCGGCGGGGACTGATGTCA
TGAAACGGGTGGAGGCTCAACGGGTGTTGTCCACGGAAGATTTCGCGCAA
ATTCGCAGGCTGCAGAAACGGTTCGAGGAGGCGAAGAGGGACCCCCGCCA
GGTACGGGGAGGAGGAAAAACAGGGAAGACGGAGCAGGTGCTGTTGGTGA
AGCGGGCAGGGAGGAAGAGAGGGAGGGATGTGGAAGAGGAGGAGGAAGAG
GAAGGGGTGGGGGGTGGGCGCGAGGGAGGGATGTTGCGGCCAGAAGACTT
GGAAGGCTATAAAAAGAGGCGTAGGGCCAGCAAGGAAGAGCGGTTGATGA
AGATCGTGTCGGGAAAGAACACCTTCGAGCACGCGGGCCACGCCGGGGGG
TTGACAAATGCCGAGAAGAAGCGGAAAAAGAATTACATGATGGTGAGGAA
AGGGAAGAGGGACGTCTTTTCCAAGCTGCGGGATACTCAACAGGAGCAAA
AAGCGCGAAAAGTGAAGGGGAAGAAGAGTGAGTTTGCAAGGGAGGCGCGC
AAGCGGCGGCGTTGCTAATGCCATCGACCATTGGGGGAGAAAACTGGGAA
GGCAATTAATTCCGTGCCAAGAGAGGATATGTTTGCTCTGAAGCAGACAA
TAGAAAAGAAAATAGAAAAGAAAGTACGCTACAATGTGTGT
back to top

protein sequence of rna7879

>rna7879-protein ID=rna7879-protein|Name=rna7879|organism=Nannochloropsis gaditana|type=polypeptide|length=583bp
MRWRILMKSFALECTRSKWNFNGRVGPRIGIYTDTGHGYDLPLMFLVIVC
HNQLTEDRASIVYHYLLQESKMEAPLSLVHTAFALLRLSRETLLQNQPDN
AQEDVKAALRSYFTKNVAHREIADISSYIDVVQKALAESGDGIMDNNEDH
ATVTVTTTTSANLLVDFSDSSTSATQQKSITPFCKSPPPKLKDHRDAYGV
HGAGKIRSTPLHSFPTDPLATPSLLTEIFSFLGTVAPYGAEPVLNGSGHP
CRMSAGPGSETTALQAVRVNLAPLLTVARLWRATASQDRFWRPIVSWTLP
TLTMDAKETRTTKPFPYRQAFLRYARCLALPVVGDGEEWHAHVLLSFEIY
DVQDSMRLFVASGPLEVIQSTESGLTALRLTGTKRSEVCRPFSAKSRDPV
NKRFENISAYLCHSWRPDFPVGLRVRVVATDARTGTQALIYNSEPKTKRS
VKDSTLNFWRRFLPRHSLFVWEAWSRWVLQNGTQEAVEISTSFYVSPVQK
SPVSSASSTGSAEEREDGWMHFPSATGTSRQRALDQPHVIMGGDETAYAN
HNSFVAVQFRTLDASVPARYIKGALERSRATGG
back to top

mRNA from alignment at CM002475.1:59915..62221-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7879 ID=rna7879|Name=rna7879|organism=Nannochloropsis gaditana|type=mRNA|length=2307bp|location=Sequence derived from alignment at CM002475.1:59915..62221- (Nannochloropsis gaditana)
CTCAAATGTCCTGTCGAGCCATAAGTCTCAGGTAAAAGAGGTATGGTTGT
GAGCTCTACATGGGATGGGCGGTGCGAGCCCATGCACGTGCGCAAGCATG
ATGGAAGAGTCCTGAAGATGATCGATGCTTTATCTGGTCTCTTCAAACAC
ACCCAATAAAAATATGAGAGTGTCCACAGCGCTTCAAATGACACATTGGT
TACATTATGAGGTGGAGGATCTTAATGAAAAGCTTCGCGTTGGAATGCAC
GAGATCAAAATGGAACTTTAATGGAAGAGTGGGTCCTCGCATTGGTATCT
ACACTGACACCGGCCATGGATACGATCTTCCTTTAATGTTTCTCGTCATA
GTCTGCCACAATCAGCTTACTGAAGATCGTGCATCAATTGTTTATCATTA
CCTCTTGCAGGAGTCAAAGATGGAAGCTCCACTTTCCCTCGTTCACACGG
CCTTCGCGCTACTTCGCTTGTCCCGCGAGACTCTGCTTCAAAATCAGCCG
GACAATGCCCAGGAGGATGTGAAGGCTGCGTTGCGCTCTTATTTTACAAA
AAATGTCGCGCATCGCGAGATTGCAGACATAAGTTCGTACATTGATGTGG
TACAAAAAGCCCTTGCGGAGAGTGGAGACGGCATCATGGATAACAATGAG
GATCACGCAACCGTTACCGTTACAACCACGACATCCGCGAATTTACTGGT
TGATTTCTCAGATTCCAGTACATCAGCAACGCAGCAGAAATCTATCACTC
CTTTTTGTAAATCTCCTCCTCCGAAATTGAAGGACCATAGGGATGCGTAT
GGTGTACATGGTGCCGGCAAAATCCGTTCTACCCCTCTCCACTCCTTCCC
CACCGACCCGCTGGCAACACCGTCCTTGCTCACGGAGATCTTTTCCTTCC
TCGGGACAGTGGCCCCTTATGGTGCAGAGCCAGTATTGAATGGCTCAGGC
CACCCGTGCAGGATGTCCGCGGGGCCAGGGTCGGAGACCACGGCTCTTCA
GGCAGTACGCGTGAACCTGGCTCCTTTGCTTACTGTAGCCCGCCTATGGC
GAGCAACCGCCTCTCAAGACCGCTTTTGGCGTCCCATCGTCTCCTGGACA
TTGCCAACACTGACGATGGACGCCAAAGAGACCCGGACCACCAAACCCTT
TCCATACAGACAGGCTTTCCTCCGGTATGCTCGGTGCTTGGCCCTGCCCG
TCGTGGGCGACGGAGAGGAATGGCATGCACATGTCCTGCTTTCCTTTGAG
ATCTATGACGTTCAAGATTCCATGCGTTTATTCGTGGCCTCCGGCCCCCT
GGAAGTGATCCAATCCACAGAATCAGGCCTGACAGCCCTCCGTTTGACCG
GAACGAAACGCTCGGAGGTCTGTCGGCCTTTCTCCGCAAAATCCCGAGAT
CCGGTCAATAAACGCTTCGAGAATATTTCAGCGTACCTTTGCCACAGCTG
GCGACCAGACTTCCCCGTCGGCTTACGCGTGCGTGTCGTGGCTACGGACG
CCAGGACAGGCACTCAGGCCCTCATCTACAATTCCGAACCGAAAACGAAG
CGGTCCGTGAAGGATTCTACTCTTAACTTCTGGAGGCGTTTCCTCCCACG
GCACAGTCTTTTCGTATGGGAAGCCTGGTCACGCTGGGTCCTTCAAAATG
GGACGCAGGAAGCCGTGGAGATAAGCACTTCATTTTACGTCTCCCCCGTC
CAGAAAAGTCCCGTATCCAGCGCCTCCTCGACGGGATCAGCCGAAGAGAG
AGAAGACGGTTGGATGCACTTTCCAAGCGCGACTGGCACAAGCCGGCAGC
GGGCCCTCGACCAACCCCATGTGATCATGGGTGGGGATGAGACTGCCTAC
GCGAACCACAACTCATTTGTGGCCGTCCAATTCCGCACGTTGGACGCTTC
CGTCCCCGCACGCTACATCAAAGGGGCCTTGGAAAGGAGCAGGGCAACAG
GAGGTTGAAATTTCTACGAAGGGAAAATGGAAAGGGAAAAGCACGACCTA
CACCAAGAAAAAGTCGAGACGAAGCAGCGAGGATGAGATGGCGCGAGACA
GGAGGGATCGCAGGGATCTTGCCTGCATCTTATGAAATTTCGCTCTGAAA
AATTATTTGCCGTCAGGACCAAAAAGTCGTTTGTTTACACTAATTGTTTC
GTTGGTTCCTATTGTCGGTCATTTTCTATGCTAGGGTGCCCTTGTTTGTT
GAACAAAGGACTCTCGAGTCTTACGACGAAAGGCTGGAAGCCAAAGCACT
TGCATTTTATTCTAGATCCATCACCTTCGTCGAGCGACAGACAAAGCTAC
CTCTGTC
back to top

Coding sequence (CDS) from alignment at CM002475.1:59915..62221-

>rna7879 ID=rna7879|Name=rna7879|organism=Nannochloropsis gaditana|type=CDS|length=1752bp|location=Sequence derived from alignment at CM002475.1:59915..62221- (Nannochloropsis gaditana)
ATGAGGTGGAGGATCTTAATGAAAAGCTTCGCGTTGGAATGCACGAGATC
AAAATGGAACTTTAATGGAAGAGTGGGTCCTCGCATTGGTATCTACACTG
ACACCGGCCATGGATACGATCTTCCTTTAATGTTTCTCGTCATAGTCTGC
CACAATCAGCTTACTGAAGATCGTGCATCAATTGTTTATCATTACCTCTT
GCAGGAGTCAAAGATGGAAGCTCCACTTTCCCTCGTTCACACGGCCTTCG
CGCTACTTCGCTTGTCCCGCGAGACTCTGCTTCAAAATCAGCCGGACAAT
GCCCAGGAGGATGTGAAGGCTGCGTTGCGCTCTTATTTTACAAAAAATGT
CGCGCATCGCGAGATTGCAGACATAAGTTCGTACATTGATGTGGTACAAA
AAGCCCTTGCGGAGAGTGGAGACGGCATCATGGATAACAATGAGGATCAC
GCAACCGTTACCGTTACAACCACGACATCCGCGAATTTACTGGTTGATTT
CTCAGATTCCAGTACATCAGCAACGCAGCAGAAATCTATCACTCCTTTTT
GTAAATCTCCTCCTCCGAAATTGAAGGACCATAGGGATGCGTATGGTGTA
CATGGTGCCGGCAAAATCCGTTCTACCCCTCTCCACTCCTTCCCCACCGA
CCCGCTGGCAACACCGTCCTTGCTCACGGAGATCTTTTCCTTCCTCGGGA
CAGTGGCCCCTTATGGTGCAGAGCCAGTATTGAATGGCTCAGGCCACCCG
TGCAGGATGTCCGCGGGGCCAGGGTCGGAGACCACGGCTCTTCAGGCAGT
ACGCGTGAACCTGGCTCCTTTGCTTACTGTAGCCCGCCTATGGCGAGCAA
CCGCCTCTCAAGACCGCTTTTGGCGTCCCATCGTCTCCTGGACATTGCCA
ACACTGACGATGGACGCCAAAGAGACCCGGACCACCAAACCCTTTCCATA
CAGACAGGCTTTCCTCCGGTATGCTCGGTGCTTGGCCCTGCCCGTCGTGG
GCGACGGAGAGGAATGGCATGCACATGTCCTGCTTTCCTTTGAGATCTAT
GACGTTCAAGATTCCATGCGTTTATTCGTGGCCTCCGGCCCCCTGGAAGT
GATCCAATCCACAGAATCAGGCCTGACAGCCCTCCGTTTGACCGGAACGA
AACGCTCGGAGGTCTGTCGGCCTTTCTCCGCAAAATCCCGAGATCCGGTC
AATAAACGCTTCGAGAATATTTCAGCGTACCTTTGCCACAGCTGGCGACC
AGACTTCCCCGTCGGCTTACGCGTGCGTGTCGTGGCTACGGACGCCAGGA
CAGGCACTCAGGCCCTCATCTACAATTCCGAACCGAAAACGAAGCGGTCC
GTGAAGGATTCTACTCTTAACTTCTGGAGGCGTTTCCTCCCACGGCACAG
TCTTTTCGTATGGGAAGCCTGGTCACGCTGGGTCCTTCAAAATGGGACGC
AGGAAGCCGTGGAGATAAGCACTTCATTTTACGTCTCCCCCGTCCAGAAA
AGTCCCGTATCCAGCGCCTCCTCGACGGGATCAGCCGAAGAGAGAGAAGA
CGGTTGGATGCACTTTCCAAGCGCGACTGGCACAAGCCGGCAGCGGGCCC
TCGACCAACCCCATGTGATCATGGGTGGGGATGAGACTGCCTACGCGAAC
CACAACTCATTTGTGGCCGTCCAATTCCGCACGTTGGACGCTTCCGTCCC
CGCACGCTACATCAAAGGGGCCTTGGAAAGGAGCAGGGCAACAGGAGGTT
GA
back to top
Synonyms
Publications