CM002475.1, CM002475.1 (supercontig) Nannochloropsis gaditana

Overview
NameCM002475.1
Unique NameCM002475.1
Typesupercontig
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length63419
Alignment location21:1..63419 +
Alignment locationNaga_100632g1:4281..5592 +
Alignment locationrna7861:4281..5592 +
Alignment locationEWM22834.1:4736..5314 +
Alignment locationNaga_100632g2:5662..7381 +
Alignment locationrna7862:5662..7381 +
Alignment locationEWM22833.1:5960..7381 +
Alignment locationNaga_100471g2:12420..14109 -
Alignment locationrna7863:12420..14109 -
Alignment locationEWM22831.1:12619..13986 -
Alignment locationNaga_100471g1:14914..17375 +
Alignment locationrna7864:14914..17375 +
Alignment locationEWM22832.1:14914..15292 +
Alignment locationEWM22832.1:15517..15638 +
Alignment locationEWM22832.1:16061..16157 +
Alignment locationEWM22832.1:16556..16618 +
Alignment locationEWM22832.1:16854..17017 +
Alignment locationEWM22832.1:17202..17375 +
Alignment locationNaga_100733g1:17847..19763 +
Alignment locationrna7865:17847..19763 +
Alignment locationEWM22829.1:17847..18073 +
Alignment locationEWM22829.1:18198..19542 +
Alignment locationNaga_100733g3:19780..22575 -
Alignment locationrna7866:19780..22575 -
Alignment locationEWM22830.1:22378..22575 -
Alignment locationEWM22830.1:22129..22251 -
Alignment locationEWM22830.1:21697..21870 -
Alignment locationEWM22830.1:21321..21501 -
Alignment locationEWM22830.1:21039..21117 -
Alignment locationEWM22830.1:20490..20838 -
Alignment locationNaga_100491g4:25350..27045 -
Alignment locationrna7867:25350..27045 -
Alignment locationEWM22826.1:26402..26952 -
Alignment locationEWM22826.1:26243..26327 -
Alignment locationEWM22826.1:26047..26121 -
Alignment locationEWM22826.1:25707..25838 -
Alignment locationNaga_100491g3:28064..30219 -
Alignment locationrna7868:28064..30219 -
Alignment locationEWM22825.1:29818..30002 -
Alignment locationEWM22825.1:29673..29734 -
Alignment locationEWM22825.1:29513..29598 -
Alignment locationEWM22825.1:29046..29210 -
Alignment locationEWM22825.1:28815..28916 -
Alignment locationEWM22825.1:28538..28627 -
Alignment locationEWM22825.1:28298..28378 -
Alignment locationNaga_100491g2:30376..32768 +
Alignment locationrna7869:30376..32768 +
Alignment locationEWM22828.1:31116..31229 +
Alignment locationEWM22828.1:31399..31469 +
Alignment locationEWM22828.1:31901..31983 +
Alignment locationEWM22828.1:32134..32768 +
Alignment locationNaga_100491g1:32819..34282 -
Alignment locationrna7870:32819..34282 -
Alignment locationEWM22827.1:34134..34271 -
Alignment locationEWM22827.1:33909..33988 -
Alignment locationEWM22827.1:33584..33762 -
Alignment locationEWM22827.1:33363..33464 -
Alignment locationEWM22827.1:33159..33253 -
Alignment locationNaga_100375g1:34758..36527 +
Alignment locationrna7871:34758..36527 +
Alignment locationEWM22823.1:34758..34855 +
Alignment locationEWM22823.1:35029..35119 +
Alignment locationEWM22823.1:35437..35524 +
Alignment locationEWM22823.1:35779..35886 +
Alignment locationEWM22823.1:36153..36215 +
Alignment locationEWM22823.1:36307..36527 +
Alignment locationNaga_100375g2:36687..38499 -
Alignment locationrna7872:36687..38499 -
Alignment locationEWM22820.1:37081..38229 -
Alignment locationNaga_100375g3:38646..40357 +
Alignment locationrna7873:38646..40357 +
Alignment locationEWM22819.1:38660..38760 +
Alignment locationEWM22819.1:38969..39911 +
Alignment locationNaga_100375g4:40460..42620 -
Alignment locationrna7874:40460..42620 -
Alignment locationEWM22821.1:42513..42611 -
Alignment locationEWM22821.1:42261..42350 -
Alignment locationEWM22821.1:42019..42101 -
Alignment locationEWM22821.1:41755..41855 -
Alignment locationEWM22821.1:41198..41357 -
Alignment locationEWM22821.1:40810..41113 -
Alignment locationEWM22821.1:40460..40633 -
Alignment locationNaga_100375g5:43172..45569 -
Alignment locationrna7875:43172..45569 -
Alignment locationEWM22822.1:45522..45569 -
Alignment locationEWM22822.1:44929..45378 -
Alignment locationEWM22822.1:44552..44779 -
Alignment locationEWM22822.1:43515..43939 -
Alignment locationEWM22822.1:43172..43316 -
Alignment locationNaga_100375g6:46370..47771 -
Alignment locationrna7876:46370..47771 -
Alignment locationEWM22824.1:47616..47703 -
Alignment locationEWM22824.1:47352..47434 -
Alignment locationEWM22824.1:46960..47193 -
Alignment locationNaga_101261g1:48407..50027 -
Alignment locationrna7877:48407..50027 -
Alignment locationEWM22818.1:49885..50025 -
Alignment locationEWM22818.1:49366..49761 -
Alignment locationEWM22818.1:48866..49143 -
Alignment locationEWM22818.1:48675..48731 -
Alignment locationEWM22818.1:48516..48516 -
Alignment locationNaga_100437g1:52186..53626 +
Alignment locationrna7878:52186..53626 +
Alignment locationEWM22817.1:52493..53503 +
Alignment locationNaga_100437g2:59915..62221 -
Alignment locationrna7879:59915..62221 -
Alignment locationEWM22815.1:60264..62015 -
Alignment locationNaga_100437g3:62395..62862 -
Alignment locationrna7880:62395..62862 -
Alignment locationEWM22816.1:62395..62862 -
Alignment locationrna7861:4736..5314 +
Alignment locationrna7862:5960..7381 +
Alignment locationrna7863:12619..13986 -
Alignment locationrna7864:14914..17375 +
Alignment locationrna7865:17847..19542 +
Alignment locationrna7866:20490..22575 -
Alignment locationrna7867:25707..26952 -
Alignment locationrna7868:28298..30002 -
Alignment locationrna7869:31116..32768 +
Alignment locationrna7870:33159..34271 -
Alignment locationrna7871:34758..36527 +
Alignment locationrna7872:37081..38229 -
Alignment locationrna7873:38660..39911 +
Alignment locationrna7874:40460..42611 -
Alignment locationrna7875:43172..45569 -
Alignment locationrna7876:46960..47703 -
Alignment locationrna7877:48516..50025 -
Alignment locationrna7878:52493..53503 +
Alignment locationrna7879:60264..62015 -
Alignment locationrna7880:62395..62862 -
Alignment locationngnoL058:14915..62221 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
21region21:1..63419 +
Naga_100632g1geneNaga_100632g1:4281..5592 +
rna7861mRNArna7861:4281..5592 +
EWM22834.1CDSEWM22834.1:4736..5314 +
Naga_100632g2geneNaga_100632g2:5662..7381 +
rna7862mRNArna7862:5662..7381 +
EWM22833.1CDSEWM22833.1:5960..7381 +
Naga_100471g2geneNaga_100471g2:12420..14109 -
rna7863mRNArna7863:12420..14109 -
EWM22831.1CDSEWM22831.1:12619..13986 -
Naga_100471g1geneNaga_100471g1:14914..17375 +
rna7864mRNArna7864:14914..17375 +
EWM22832.1CDSEWM22832.1:14914..15292 +
EWM22832.1CDSEWM22832.1:15517..15638 +
EWM22832.1CDSEWM22832.1:16061..16157 +
EWM22832.1CDSEWM22832.1:16556..16618 +
EWM22832.1CDSEWM22832.1:16854..17017 +
EWM22832.1CDSEWM22832.1:17202..17375 +
Naga_100733g1geneNaga_100733g1:17847..19763 +
rna7865mRNArna7865:17847..19763 +
EWM22829.1CDSEWM22829.1:17847..18073 +
EWM22829.1CDSEWM22829.1:18198..19542 +
Naga_100733g3geneNaga_100733g3:19780..22575 -
rna7866mRNArna7866:19780..22575 -
EWM22830.1CDSEWM22830.1:22378..22575 -
EWM22830.1CDSEWM22830.1:22129..22251 -
EWM22830.1CDSEWM22830.1:21697..21870 -
EWM22830.1CDSEWM22830.1:21321..21501 -
EWM22830.1CDSEWM22830.1:21039..21117 -
EWM22830.1CDSEWM22830.1:20490..20838 -
Naga_100491g4geneNaga_100491g4:25350..27045 -
rna7867mRNArna7867:25350..27045 -
EWM22826.1CDSEWM22826.1:26402..26952 -
EWM22826.1CDSEWM22826.1:26243..26327 -
EWM22826.1CDSEWM22826.1:26047..26121 -
EWM22826.1CDSEWM22826.1:25707..25838 -
Naga_100491g3geneNaga_100491g3:28064..30219 -
rna7868mRNArna7868:28064..30219 -
EWM22825.1CDSEWM22825.1:29818..30002 -
EWM22825.1CDSEWM22825.1:29673..29734 -
EWM22825.1CDSEWM22825.1:29513..29598 -
EWM22825.1CDSEWM22825.1:29046..29210 -
EWM22825.1CDSEWM22825.1:28815..28916 -
EWM22825.1CDSEWM22825.1:28538..28627 -
EWM22825.1CDSEWM22825.1:28298..28378 -
Naga_100491g2geneNaga_100491g2:30376..32768 +
rna7869mRNArna7869:30376..32768 +
EWM22828.1CDSEWM22828.1:31116..31229 +
EWM22828.1CDSEWM22828.1:31399..31469 +
EWM22828.1CDSEWM22828.1:31901..31983 +
EWM22828.1CDSEWM22828.1:32134..32768 +
Naga_100491g1geneNaga_100491g1:32819..34282 -
rna7870mRNArna7870:32819..34282 -
EWM22827.1CDSEWM22827.1:34134..34271 -
EWM22827.1CDSEWM22827.1:33909..33988 -
EWM22827.1CDSEWM22827.1:33584..33762 -
EWM22827.1CDSEWM22827.1:33363..33464 -
EWM22827.1CDSEWM22827.1:33159..33253 -
Naga_100375g1geneNaga_100375g1:34758..36527 +
rna7871mRNArna7871:34758..36527 +
EWM22823.1CDSEWM22823.1:34758..34855 +
EWM22823.1CDSEWM22823.1:35029..35119 +
EWM22823.1CDSEWM22823.1:35437..35524 +
EWM22823.1CDSEWM22823.1:35779..35886 +
EWM22823.1CDSEWM22823.1:36153..36215 +
EWM22823.1CDSEWM22823.1:36307..36527 +
Naga_100375g2geneNaga_100375g2:36687..38499 -
rna7872mRNArna7872:36687..38499 -
EWM22820.1CDSEWM22820.1:37081..38229 -
Naga_100375g3geneNaga_100375g3:38646..40357 +
rna7873mRNArna7873:38646..40357 +
EWM22819.1CDSEWM22819.1:38660..38760 +
EWM22819.1CDSEWM22819.1:38969..39911 +
Naga_100375g4geneNaga_100375g4:40460..42620 -
rna7874mRNArna7874:40460..42620 -
EWM22821.1CDSEWM22821.1:42513..42611 -
EWM22821.1CDSEWM22821.1:42261..42350 -
EWM22821.1CDSEWM22821.1:42019..42101 -
EWM22821.1CDSEWM22821.1:41755..41855 -
EWM22821.1CDSEWM22821.1:41198..41357 -
EWM22821.1CDSEWM22821.1:40810..41113 -
EWM22821.1CDSEWM22821.1:40460..40633 -
Naga_100375g5geneNaga_100375g5:43172..45569 -
rna7875mRNArna7875:43172..45569 -
EWM22822.1CDSEWM22822.1:45522..45569 -
EWM22822.1CDSEWM22822.1:44929..45378 -
EWM22822.1CDSEWM22822.1:44552..44779 -
EWM22822.1CDSEWM22822.1:43515..43939 -
EWM22822.1CDSEWM22822.1:43172..43316 -
Naga_100375g6geneNaga_100375g6:46370..47771 -
rna7876mRNArna7876:46370..47771 -
EWM22824.1CDSEWM22824.1:47616..47703 -
EWM22824.1CDSEWM22824.1:47352..47434 -
EWM22824.1CDSEWM22824.1:46960..47193 -
Naga_101261g1geneNaga_101261g1:48407..50027 -
rna7877mRNArna7877:48407..50027 -
EWM22818.1CDSEWM22818.1:49885..50025 -
EWM22818.1CDSEWM22818.1:49366..49761 -
EWM22818.1CDSEWM22818.1:48866..49143 -
EWM22818.1CDSEWM22818.1:48675..48731 -
EWM22818.1CDSEWM22818.1:48516..48516 -
Naga_100437g1geneNaga_100437g1:52186..53626 +
rna7878mRNArna7878:52186..53626 +
EWM22817.1CDSEWM22817.1:52493..53503 +
Naga_100437g2geneNaga_100437g2:59915..62221 -
rna7879mRNArna7879:59915..62221 -
EWM22815.1CDSEWM22815.1:60264..62015 -
Naga_100437g3geneNaga_100437g3:62395..62862 -
rna7880mRNArna7880:62395..62862 -
EWM22816.1CDSEWM22816.1:62395..62862 -
rna7861polypeptiderna7861:4736..5314 +
rna7862polypeptiderna7862:5960..7381 +
rna7863polypeptiderna7863:12619..13986 -
rna7864polypeptiderna7864:14914..17375 +
rna7865polypeptiderna7865:17847..19542 +
rna7866polypeptiderna7866:20490..22575 -
rna7867polypeptiderna7867:25707..26952 -
rna7868polypeptiderna7868:28298..30002 -
rna7869polypeptiderna7869:31116..32768 +
rna7870polypeptiderna7870:33159..34271 -
rna7871polypeptiderna7871:34758..36527 +
rna7872polypeptiderna7872:37081..38229 -
rna7873polypeptiderna7873:38660..39911 +
rna7874polypeptiderna7874:40460..42611 -
rna7875polypeptiderna7875:43172..45569 -
rna7876polypeptiderna7876:46960..47703 -
rna7877polypeptiderna7877:48516..50025 -
rna7878polypeptiderna7878:52493..53503 +
rna7879polypeptiderna7879:60264..62015 -
rna7880polypeptiderna7880:62395..62862 -
ngnoL058syntenic_regionngnoL058:14915..62221 +
Analyses
This supercontig is derived from or has results from the following analyses
Analysis NameDate Performed
Gennome assembly for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships
Sequences
Synonyms
Publications