rna7090, rna7090 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7090
Unique Name	rna7090
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2818
Alignment location	CM002470.1:425434..427137 +

Link to JBrowse

Properties


Property Name	Value
Product	Protein of unknown function DUF2039
Orig transcript id	gnl\|cribi\|Naga_100139g4.4744.mrna
Orig protein id	gnl\|cribi\|Naga_100139g4.4744
Gbkey	mRNA
Note	encoded by transcript variant 3; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:425434..427137 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100139g4	gene6856	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7090	rna7090-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23592.1	cds7073	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:425434..427137+
coding sequence from alignment at CM002470.1:425434..427137+

mRNA sequence

>rna7090 ID=rna7090|Name=rna7090|organism=Nannochloropsis gaditana|type=mRNA|length=2818bp
TCACCACCCAGGGCGGTTGCTGCAGGATCCAACGCGGTCGAAACCCATTT
TCTCTTGGCCAGCACCAGAATCGGTAAACGCTACCTTTGAGTATCGTCGT
CGCTGTCGTCGACCATAAGCGTACCTTTCTCGCGGGCCCTAACCAAGCGA
CACATAAAAAACAATCATCACCAACTGGAACAGTACGGTCTTGCCTTGTA
TGGTCCGTCCTTCTCGTCCGGCCCCCCTCATGTTGGAGGAGCCGTTCATG
CTTTTCTCCGGGCTTGGCGGCGTTAGCACTCCTCACGCACCTGAAGACGA
CGATCCAAGCACAACACAAGAATCAACCATACTGAGCCCATGTTCGCGCT
CCTTGAGCCGGAACAAAGAGTTAGCGCCGGTGTCTCCGGCGGAAGCTCCT
GTGGGGGCGTCACCCAGACACGGTCTTGATACGACTCCCGACGAGATATT
TAACCAACAGGAAGGACAGGGAGGCAATCCGAGCAACCCCACGGAGAGCG
TGGAGGACGCTCGAAACAGAAGTAGCAGCCAAAGCAGCGGCAGCAGCGCG
TGCAGAAAAATATGCACAGAAGGATTAGAGGAAGACAAAGAAAAAGCTGC
CGAGACAGCCAGCCCCCCTCTCACGTCCAAGCGCTCGACCTTTGGCTTTT
TCAAACGTTCCAACTCCGCCTCGTCCGCGCTGATGGACTTGCCAGTCGAC
AACACCCTCTCCGCAGGGACCCCGCCAGCATCGTCATACCGGTGTCCGGG
CCTCAAGGTCAAGAAAAGGGGCTTCCCTGCCCTCATCCTGACGCCTCGCG
GCAACTCCTCCCATCCAGCTACCTCCCTCCTGCCTCCCCGACCCTTGCCT
CCCCTTCCCCCCAGCCGCAGCGTCAATGGCACCCACAGTGGCAGTATCTC
CACGCCAAACGGCGGCGGCAAGCCTCTTTCCTCCCCTCCCTCCCTCCTGA
ACCTGATGGCCCGCCTGCGCAGGCGGCAACCAGCCACAGCCATCGAGGAG
ACCTCCTGCTGCTCCTCCTCCACCTCCACCTCCTCCTCTTCCTCCTCCAT
CATCATGACGCCGGGCGAGATCAGCAGCCGGGAAGACCCGACCGCGGCGA
GCCGAAGCAGCAGCAGGCGCGTGCTCACGGTGGACACCGGGCCGCGATGC
TCGAGTGTATCCGGGCCCATGGCCCTCTCTACCATGGACTTCCACTACGA
CGGGAGCAAGATCCTCGACTACCTGTACGTGGGCGGGGAGCACATCCCCA
GCCAGGACGCGCTCGCTGAGACATTCAACATCACGCACATCGTCAACACC
ACGGTCAAGGACTACTATCCCCATCACCCTGTGTCCAGGGGCGACTACTG
CCAGCTCTTCTTGCTGGATGCGCTCTCGGAGGAACTCTCCGAGACGAAGA
TGGAGACGGCGTTCCAAATGATTGATCGGGCCCGGGCGGGGGGGCACGCC
TGCCTGGTGCATTGTCGGAATGGGATGTCGCGGTCGACCTCGGTGGTGAT
AGCCTACCTGATGCGTCACTTCAAGATGCCCTTGCTGGAGGCCTTCAATT
TCGTCCGAGAGCGTCGGCCTTGCACAAGCCCGAACCCGTCCTTCATGCGG
CAATTGGCCGCGTTCGAGCGGGCCTGGCTGGGGGTGAGTGGGAACACGCT
GGACGTGGACCACTACGCCGACGATCGGTTCGCGTCCATACGCGACCTGG
CCGTGGGGCCAGGGAGAGGGGGCGAGGAAGAGGAGGTTGTGGAGGAGGAG
GAAGAGGAAGAGGAAGAGGAGGGGAGGCTGGCGGGTCTGGAGGTGGGGGA
AGAGGATTCAAGTGGAGGGTGGGATGTGGGGTGTCCTTTGTCGGGGGAGG
AGGGACAGGGATGGGCGGAGGGCGAGGGCGAGGAAGAGGTTTCGAAGAGG
TAAAAGGAACTGGGCGGGAGAGACAGCGGGCGACATGCAGGCATGGGCGG
ATACGGAAACAGGGAAGGATCGATGCGCAAGGAGCAGCGAGATGCTGGCC
ACAAGGACATGAGAGCGGGCTGGGGCCCGTGGGGAGGGCTGGTTGCCTAA
GAGGATGCCTGTCGCGGGTAGAATTTACGAAATTCGTGTACATTACTTCT
TTCCGCTTCTGGGAGAAGAACGGGGTAATTCAGGGGGAGTGCCCCAGCAG
CAAGAGGATCAGCAGTGCTCGTACAGAGGGAGCATGTCCACTAAGGAACA
GTAACGTGACGAAGGATTCATAATTCGCAACGCGTTTCCTCGTCGTGGGG
GAGCGGAAGACTCTAGCTTTATACAACAGAGAAAAGATGTGCAAAGGAGG
CACGGGAAGACGAAGATATAAAGGTGTCGTGGGCCACTTTGGTCGGCGAT
TGACACGGAGTGTGGCAATATGTTGGAAAGGATAGGCAAGGAATTGCGAG
TACCCTGTGGCTTTAGAAGTGATTTCCATTTTTCTGCCACATGTAGAGGG
ATTCAAATGTTAAGACAATTCTGATGTGTAACGAAAAGAGTGCATTGAGT
TAGGAATACGTGTGTGCAGAGACATGCGCGCCACTACGCAATTGATTAGA
TCAAAGGCACTTAACTACACCTTGAATAATTCCCATTGGACGCCGTTTAA
GTCTATCGTGTGTGTAAATAGGCGACAAAGAGATATGGGTACTTAAAAGA
GAACTTGGCACGCATGGGAGGCATTCTAATCGAATGTGAGCTGAGAGATG
AGAGAGATAAGAGCAGACACCGCCAGTCAATTTGAAAACAAATGAAGCTA
AGGAGCACATTCAGCAGGAGATACCCGAGTCGTGCTCTTTCTTTTCGTAT
TTCCTACTGTTGCACGGG

protein sequence of rna7090

>rna7090-protein ID=rna7090-protein|Name=rna7090|organism=Nannochloropsis gaditana|type=polypeptide|length=190bp
MGLPAYCYTRAAQVMSGQRRRGPAHQNTFAFRHNPKSKKTERILASPIEG
LCHRCHEKVEWRKKYRKYKPLSAPATCTGCHTKSVRAAYHQICDPCAEKR
AVCAGCAEPKSIVKKTGAAAEKDVEEKRRALERDIKGLHLRKQRKILREF
DRSGGDMDVEGAMEAVGSDLDDDEIGDSDDKEYDEDSERE

mRNA from alignment at CM002470.1:425434..427137+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7090 ID=rna7090|Name=rna7090|organism=Nannochloropsis gaditana|type=mRNA|length=1704bp|location=Sequence derived from alignment at CM002470.1:425434..427137+ (Nannochloropsis gaditana)
caCTTTGACACTTCCGCCCCCGACGCTGACACGTTCTGCGTAGAATGACA
CGTAAATATGGCCGTCTTTCAGGAAGCATAGtccaggagggggtggccTC
AGAACGCGTGGGGTGTATTAAACGGGCCTCAGTGATCGACTTTGCGTCGC
GTGGCGCCTAGATGGCCACGTCAGCAAACATAGACGTGATACCAAAGGGT
TGGATATTTTATGTCACGTGGCTGTGGAAAGGCGCCTTCAAGCGACCTCG
CACTCTTACTTTGTGAGCCTTGGTCCCCGCAGTGGATAGCACGCATGTGT
CTTTTGCCTTCTTCCGTAGCCCAATTCGTACAAAGGGGCTGAAATTGTGG
GCCATTCTGGATAGGGGTTCTTGGGAGGATGACCTCCCACCCTACTGCTT
GTACTGAAGGTGAGAcatcccttcccaccatCAATTGTCAGCATGTTAGG
CTTATTTGTACGGTCATGGCACGATGCACGGCATCGATACATGCATATGA
CGATTTATCCCTTTTGTGTCGCGGATACACCGCATACGTCGATGTACCCT
CCACTTGACCTTCACCTCACGATGTCTACACTCCCACAAGCTGTCCCGCT
CTCATAAATACTCGCTTTGCTCCCCTATCACCTCCACCGACAAAACAATG
GGTCTGCCTGCCTATTGTTACACTCGTGCAGCACAGGTTATGAGCGGGCA
ACGTCGTCGAGGACCTGCGCACCAGAATACATTCGCGTTTCGACACAATC
CCAAGAGCAAGAAAACCGAGCGCATCCTAGCGTCTCCGATTGAGGGTCTC
TGTCACCGATGCCATGAAAAAGTAGAATGGCGAAAAAAATATAGGAAATA
CAAGCCACTTAGCGCCCCTGCAACATGCACCGGCTGTCACACCAAGAGTG
TCCGTGCGGCGTACCACCAAATTTGTGACCCGTGCGCTGAAAAGCGCGCC
GTCTGCGCAGGTTGCGCTGAGCCCAAGTCGATTGTCAAGAAGACAGGAGC
GGCTGCAgaaaaggacgtggaggagaagcgccgGGCGTTAGAGAGAGACA
TAAAAGGGTTACATTTGCGAAAGCAGCGCAAAATTCTGAGAGAATTTGAT
CGGTCGGGCGGAGATATGGATGTGGAAGGTGCtatggaggcggtgggatC
GGACCTCGATGACGACGAAATAGGAGATAGCGACGACAAAGAATATGATG
AGGATTCGGAAAGAGAGTGAGGGAGCGAGAtatggggcaggagggaagga
atggacgCCTCAAATGCGGAAAGTGTTGAGCATTGTGTTTAAAGGACGAG
GGCTGAAAGGACGAGGGCTGAGAGTATACACCTAGACTAGAACTTGTAAT
TAAACGGCTGAAAGTATCATCAAATGAGGCGATCTCTATGTTGAAAATGT
CGATTGTAGATccagggaggatgacgaccaCCTCTTGAAGGCACACGTGG
TATCGAATTGTTACATTCTTTTTACAGGGTGTGTTGCCGGCATTATTaat
ggaagaagacgtgggATCAAAGAACTATGCCTTCATGTGGTACCTGATCA
AGGAGCCCACAGTTGGATACTACAgagctcttcttccaaaaagCTCTCCA
TGCAAGGGACCCCTTGACAAGCCCAGGATTCATTCCTAAGAGACCTTCCG
TGACAATCCATTATATGTCATATTCTAGCAATGTCAGTGGTTGGCCGAat
gtct

Coding sequence (CDS) from alignment at CM002470.1:425434..427137+

>rna7090 ID=rna7090|Name=rna7090|organism=Nannochloropsis gaditana|type=CDS|length=573bp|location=Sequence derived from alignment at CM002470.1:425434..427137+ (Nannochloropsis gaditana)
ATGGGTCTGCCTGCCTATTGTTACACTCGTGCAGCACAGGTTATGAGCGG
GCAACGTCGTCGAGGACCTGCGCACCAGAATACATTCGCGTTTCGACACA
ATCCCAAGAGCAAGAAAACCGAGCGCATCCTAGCGTCTCCGATTGAGGGT
CTCTGTCACCGATGCCATGAAAAAGTAGAATGGCGAAAAAAATATAGGAA
ATACAAGCCACTTAGCGCCCCTGCAACATGCACCGGCTGTCACACCAAGA
GTGTCCGTGCGGCGTACCACCAAATTTGTGACCCGTGCGCTGAAAAGCGC
GCCGTCTGCGCAGGTTGCGCTGAGCCCAAGTCGATTGTCAAGAAGACAGG
AGCGGCTGCAgaaaaggacgtggaggagaagcgccgGGCGTTAGAGAGAG
ACATAAAAGGGTTACATTTGCGAAAGCAGCGCAAAATTCTGAGAGAATTT
GATCGGTCGGGCGGAGATATGGATGTGGAAGGTGCtatggaggcggtggg
atCGGACCTCGATGACGACGAAATAGGAGATAGCGACGACAAAGAATATG
ATGAGGATTCGGAAAGAGAGTGA

Synonyms

Publications