rna6432, rna6432 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6432
Unique Name	rna6432
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1635
Alignment location	CM002468.1:500706..503711 -

Link to JBrowse

Properties


Property Name	Value
Product	dna gyrase subunit a
Orig transcript id	gnl\|cribi\|Naga_100020g46.5421.mrna
Orig protein id	gnl\|cribi\|Naga_100020g46.5421
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:500706..503711 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100020g46	gene6215	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24288.1	cds6416	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6432	rna6432-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:500706..503711-
coding sequence from alignment at CM002468.1:500706..503711-

mRNA sequence

>rna6432 ID=rna6432|Name=rna6432|organism=Nannochloropsis gaditana|type=mRNA|length=1635bp
GCAGCACAAGCTTACGGTGACAGGCTACTTCCACGAATCACAATCGTGTC
AGACCCCACGAAATGTGCCAGCACGCGGGAAGGCTGGCAAGCAGGAGGAG
GCCTGCTCCTCGCGCCCTCCCTCACGAGGCCTCAGCTCCGCCGGCCCCCC
GTGGGGTGAATTAGGAGAGGGTATTCCAACGCTCAAATGCCCGCTGTTCC
GGCCACGGCACAGGAAATATAGCCCACCGTTTGTGGAAGCTGCAGGAGCA
TATCTTGCCGTCGAAACCAAAGGAAATCATGCCGGGAGAGGTCCTTCGGG
TCGGTGTGATTGGAGTGGGGCGAATCGGTCGCGTTCACATCGAGACGATC
CAATCCATCAAGAATGCTGTAGTTACTATGGTTGCCGATATTTGGGAGGA
AGGGGCGAGGCAAGTCTGCGAGCAGTACGGCATCCCCAAGTACGTGAAGG
ATTACAAGGATCTCATCGCCGCCGCGGATGTAGACGCCGTACTCATTTGC
TCGCCTACGGATCAGCACGCTTCTCAAATTATCGAAGCATCGCGTGCGGG
CAAAACAATCTTCTGTGAAAAGCCCATTTCTTTAAATTTGGAGATCATTG
ATGAGGTGTGCAACGTTGTTGAAGAGACGGGTGCTCTGTGTATGGTAGCA
TTTCAGCGCCGTTTTGATCCCACCTTTCGCCGTCTGCAAGCTGCGGTGAC
AAAGGGTGAAATTGGTGACGTCCACATGATCGCCATCACCTCGCGAGACC
CGGGCCCGCCGCCGGTCGCCTATATTGCCCAGTCGGGAGGCTTGCACTGC
GACATGGCCATCCACGATTTCGACATGGCACGCTTCATCACTGGGTCCGA
TATAGTCGAGGTCTTCACCAAGGGCGACTGTAAGATAGACCCGGCAATTG
CGGAGGCTGGCGACATCGATACCTCGCTGGTAGTGCTCAAGTTTGCAAAT
GGCGTCATCGGCACTATTTCGAATTCCCGGAAGGCCACCTACGGCTACGA
CCAGCGCGTGGAAGTGTTCGGCTCGAAGGGCATGATTCAGTCTGAAAACC
TGCGCCCTAATATGTGCACGCTGGCCACGGCAGAGTCCGTGCACCAGGAC
CTGCCTTTCAATTTCTTCATGGACCGCTACACCGAGGCCTACAAGGTGGA
GATGGAGGAGTTCGTCAAATGCGCACTTGCCGGCTCAAAACCCCCTTGCG
GTGTCGCAGAGGGGCGTGCCGCCACGAAGGTAGCGATGGCTGCCGCGGCC
TCCATGAAGTCGAACGCCCCTGTTGCGCTCTAAGGCATCGACGCAGAGAT
GCGTGTTGGATGCCGCCGACCTCATCTCTCCCTTTGCGCATGATTACAGC
CAGGATCGCTAGTCTTGGGTATAGGTCGCGGGGAATATATGAAGCAAAGA
AAAGGTTATACGAGTAACGCACGATCAAGGCAATCAGTCGCACGGTTGTC
TTCACACTCGTTGGGTTTGTTACGAAAGCGGAGGCGGAATGGGGTGGGGA
GTGTGCTTGAGAATCGTTAACTTTGGATGAAGAGGTTTTGAGCCCGACCC
GAATGTCTGGAAGCGAACTACGAAACGAATAAGCTTCTCGCATAAAACGG
ACAAATTTTATTTTTCAGCAGTGCTTTTTGTAAAA

protein sequence of rna6432

>rna6432-protein ID=rna6432-protein|Name=rna6432|organism=Nannochloropsis gaditana|type=polypeptide|length=1001bp
MFAASVSAVLKSARRGGRFGFHLQPWPPSFVPTLALNPRPVPERGSRWTL
QAARGLSKFSRDGGGGARSMRNKKTRLSVKLSSRQGDGSDDDGIPREPEI
LRDFGGGNGEKMGGESQSISAAGGDSGYGDKVLPTELNLELSSSFMQYAM
STILGRALPDARDGLKPVHRRILFAMHVLNLQPESSYRKCARVVGEVLGK
YHPHGDASVYDALVRMAQDFVMSAPLVAGHGNFGSVDDDPAAAMRYTECK
LSLLARDALLKDINLDTVDFAPNFDGNEVEPLVLPARVPMLLLNGATGIA
VGMATNVPPHNLGEVLDGTLALIEDPSLSDDKLLRLIPAPDFPTGGDIMG
LEGPRKLYTNGSGSIVMRAKTHMETIPMGGGRQVRNAIVVTELPYQVNKA
SLLEKIADMVNEKKMEGISDLRDESDREGIRVVIELKRDAMPSVVENNLF
KKTALQSSFPGNFLALANDGRQPQRLTLRESLQSFIDFRFKTIRRRTQHE
LSKLESRDHVVEGLIRALDRIDDVVELVRRAKDTAAAKATLMGSQYDMSE
AQAQAILALTLGRLTALEDAKLRAEREQLRGQIEDFQAMMRQDEKVFDVM
KQELREIRAKHAVPRRSSIRAHAGALTELDLLANDRSVMMVTEAGYIKRM
PLDDFEQQRRGTRGKAGARMSQDDLVNHFFACNDHDHVVFISEKGVAFGI
RAFQVPVASRVSKGVPLPQVLPLSSDDHVSSVIPLGESFQADEFLVLLTK
QGFIKKTPVDAFKKLTSRGLIAISLGEGDTLGWARRCTDQDDILISTRKG
YSMRFASADLKPTGRTSRGCSAIKLRKTDEMVDITVLRPDAAVDVDGPGD
CGSGSNGQYLLAVTTAGYGKRVSADSFKVQRRGGMGVIAIKFKAGSGDSL
ACMRACSDDYEVVLSTQKGTIVRQRVAAIALQSRTATGVRVQRLDEGNII
KSVAMLPADSDDDDEDGSLANKADAVMKDLRYENEAAVVMSIGSQTGVVD
A

mRNA from alignment at CM002468.1:500706..503711-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6432 ID=rna6432|Name=rna6432|organism=Nannochloropsis gaditana|type=mRNA|length=3006bp|location=Sequence derived from alignment at CM002468.1:500706..503711- (Nannochloropsis gaditana)
ATGTTCGCAGCATCTGTCTCGGCCGTCTTGAAGTCAGCGCGAAGAGGTGG
TCGTTTCGGTTTTCATTTACAACCTTGGCCTCCATCATTTGTCCCTACAC
TTGCTTTAAACCCGCGACCCGTGCCAGAAAGGGGTAGCAGATGGACCTTG
CAAGCCGCCCGAGGGCTCAGCAAATTTTCGAGAGATGGTGGAGGTGGAGC
CCGGAGTATGCGGAACAAGAAGACACGCTTGAGTGTCAAACTCTCGTCAA
GGCAAGGTGATGGTAGCGACGACGACGGGATTCCTCGTGAGCCCGAAATT
CTTCGGGACTTCGGCGGTGGGAATGGTGAGAAGATGGGCGGTGAATCACA
AAGCATATCAGCTGCCGGTGGGGATAGCGGGTACGGGGACAAGGTCCTGC
CCACTGAGCTGAACTTGGAGCTTTCCTCCTCCTTCATGCAGTATGCCATG
TCCACTATCCTAGGCCGAGCCCTTCCCGATGCTCGAGACGGCCTCAAACC
AGTTCACCGCCGCATTCTCTTCGCCATGCACGTCCTAAATTTGCAACCTG
AATCCTCATACCGCAAATGCGCGCGCGTGGTTGGCGAGGTCTTAGGAAAG
TACCATCCTCACGGGGATGCCTCAGTCTACGATGCTTTAGTGCGCATGGC
TCAAGATTTTGTTATGAGCGCGCCATTGGTGGCGGGGCATGGTAACTTTG
GGTCCGTGGACGACGACCCGGCCGCAGCCATGCGTTACACGGAGTGCAAG
CTGTCGCTCCTCGCGCGAGACGCCTTGCTAAAAGACATCAATTTGGACAC
GGTCGACTTCGCACCAAATTTCGACGGCAATGAGGTAGAGCCACTGGTTC
TACCGGCACGTGTCCCGATGCTTCTGTTAAACGGTGCCACGGGCATCGCC
GTTGGCATGGCAACCAACGTACCACCCCACAACCTGGGCGAGGTGCTAGA
CGGGACCTTGGCGTTGATCGAGGACCCATCATTATCCGACGACAAGCTTT
TGCGTCTCATACCAGCGCCCGACTTTCCCACCGGCGGGGACATCATGGGC
TTGGAGGGCCCTCGTAAGCTGTACACGAATGGTTCAGGTTCCATCGTGAT
GCGGGCCAAAACGCACATGGAGACCATACCCATGGGGGGGGGGCGGCAAG
TACGCAACGCAATTGTGGTGACAGAGCTTCCATATCAAGTCAACAAAGCT
TCTCTCCTGGAAAAAATCGCAGATATGGTGAATGAGAAGAAAATGGAGGG
CATTTCCGACCTGCGAGACGAGAGCGACCGGGAGGGCATCCGTGTTGTCA
TTGAATTGAAGCGCGATGCCATGCCTAGCGTGGTGGAAAATAATCTCTTC
AAAAAGACTGCTTTGCAAAGCTCTTTCCCGGGCAATTTTCTGGCCCTCGC
CAACGATGGGAGGCAGCCGCAGCGCCTGACGCTCAGAGAATCGCTTCAAT
CCTTCATCGACTTCCGCTTCAAGACAATTCGACGGCGCACGCAGCACGAA
TTGAGTAAGTTGGAGTCGCGTGATCACGTGGTCGAGGGTCTTATTCGGGC
GCTAGATCGGATTGACGACGTCGTTGAGCTTGTTCGCCGAGCGAAAGACA
CAGCGGCCGCCAAGGCGACCTTAATGGGATCGCAGTACGACATGTCCGAG
GCTCAGGCTCAAGCAATACTGGCCCTTACCTTGGGGCGGTTGACAGCTTT
AGAGGATGCCAAACTTCGGGCCGAGAGGGAACAGCTCCGGGGTCAAATCG
AGGACTTCCAGGCCATGATGCGACAAGACGAGAAGGTGTTCGATGTCATG
AAACAGGAGCTCCGGGAAATTCGCGCGAAGCACGCGGTGCCCCGTCGGTC
TTCTATCCGCGCCCATGCCGGCGCTTTAACAGAGCTTGACCTTTTGGCCA
ACGATCGCTCAGTCATGATGGTAACCGAGGCTGGCTACATAAAACGCATG
CCTCTTGATGATTTTGAGCAGCAGCGCCGCGGAACTCGAGGCAAGGCAGG
GGCGCGTATGTCCCAGGACGATCTGGTCAACCACTTTTTTGCTTGCAACG
ATCATGATCACGTCGTTTTTATTTCTGAAAAAGGGGTTGCCTTTGGCATC
AGGGCTTTCCAGGTCCCTGTCGCCTCTCGTGTCTCCAAGGGCGTGCCCCT
CCCCCAGGTGCTGCCCCTCTCTTCGGACGACCATGTCTCAAGCGTCATAC
CTCTAGGGGAGAGTTTTCAGGCGGACGAGTTCCTTGTTCTACTAACTAAG
CAGGGCTTTATCAAGAAGACTCCAGTGGATGCTTTCAAAAAATTAACTTC
ACGTGGCCTCATCGCAATCAGTCTAGGCGAAGGCGACACTCTCGGGTGGG
CTCGGCGTTGCACTGACCAGGATGACATCCTAATATCTACACGGAAGGGC
TACTCCATGCGTTTTGCTTCGGCGGATTTGAAACCTACGGGACGCACCTC
TCGGGGTTGCAGCGCCATCAAGCTTCGTAAAACGGACGAGATGGTTGATA
TTACCGTGCTGCGTCCCGATGCTGCTGTCGATGTCGATGGGCCCGGTGAT
TGTGGAAGTGGATCAAATGGACAGTATTTATTGGCCGTGACAACAGCCGG
GTACGGGAAGCGAGTCAGTGCTGACAGTTTCAAGGTACAGAGGCGTGGCG
GTATGGGTGTTATCGCCATCAAATTCAAGGCCGGGAGTGGAGACTCGTTG
GCATGCATGCGCGCTTGCTCCGACGACTACGAGGTTGTGCTGTCTACTCA
AAAAGGTACAATCGTGCGTCAACGCGTGGCTGCTATCGCTTTGCAGAGTC
GCACGGCTACAGGTGTCCGTGTGCAACGCCTAGACGAGGGAAACATTATC
AAGAGCGTGGCAATGCTACCCGCGGATAGCGACGACGATGACGAAGACGG
CTCCCTGGCAAATAAAGCTGATGCCGTTATGAAGGATCTAAGGTACGAAA
ACGAAGCAGCTGTTGTCATGTCCATAGGGAGCCAAACGGGGGTGGTGGAT
GCGTAA

Coding sequence (CDS) from alignment at CM002468.1:500706..503711-

>rna6432 ID=rna6432|Name=rna6432|organism=Nannochloropsis gaditana|type=CDS|length=3006bp|location=Sequence derived from alignment at CM002468.1:500706..503711- (Nannochloropsis gaditana)
ATGTTCGCAGCATCTGTCTCGGCCGTCTTGAAGTCAGCGCGAAGAGGTGG
TCGTTTCGGTTTTCATTTACAACCTTGGCCTCCATCATTTGTCCCTACAC
TTGCTTTAAACCCGCGACCCGTGCCAGAAAGGGGTAGCAGATGGACCTTG
CAAGCCGCCCGAGGGCTCAGCAAATTTTCGAGAGATGGTGGAGGTGGAGC
CCGGAGTATGCGGAACAAGAAGACACGCTTGAGTGTCAAACTCTCGTCAA
GGCAAGGTGATGGTAGCGACGACGACGGGATTCCTCGTGAGCCCGAAATT
CTTCGGGACTTCGGCGGTGGGAATGGTGAGAAGATGGGCGGTGAATCACA
AAGCATATCAGCTGCCGGTGGGGATAGCGGGTACGGGGACAAGGTCCTGC
CCACTGAGCTGAACTTGGAGCTTTCCTCCTCCTTCATGCAGTATGCCATG
TCCACTATCCTAGGCCGAGCCCTTCCCGATGCTCGAGACGGCCTCAAACC
AGTTCACCGCCGCATTCTCTTCGCCATGCACGTCCTAAATTTGCAACCTG
AATCCTCATACCGCAAATGCGCGCGCGTGGTTGGCGAGGTCTTAGGAAAG
TACCATCCTCACGGGGATGCCTCAGTCTACGATGCTTTAGTGCGCATGGC
TCAAGATTTTGTTATGAGCGCGCCATTGGTGGCGGGGCATGGTAACTTTG
GGTCCGTGGACGACGACCCGGCCGCAGCCATGCGTTACACGGAGTGCAAG
CTGTCGCTCCTCGCGCGAGACGCCTTGCTAAAAGACATCAATTTGGACAC
GGTCGACTTCGCACCAAATTTCGACGGCAATGAGGTAGAGCCACTGGTTC
TACCGGCACGTGTCCCGATGCTTCTGTTAAACGGTGCCACGGGCATCGCC
GTTGGCATGGCAACCAACGTACCACCCCACAACCTGGGCGAGGTGCTAGA
CGGGACCTTGGCGTTGATCGAGGACCCATCATTATCCGACGACAAGCTTT
TGCGTCTCATACCAGCGCCCGACTTTCCCACCGGCGGGGACATCATGGGC
TTGGAGGGCCCTCGTAAGCTGTACACGAATGGTTCAGGTTCCATCGTGAT
GCGGGCCAAAACGCACATGGAGACCATACCCATGGGGGGGGGGCGGCAAG
TACGCAACGCAATTGTGGTGACAGAGCTTCCATATCAAGTCAACAAAGCT
TCTCTCCTGGAAAAAATCGCAGATATGGTGAATGAGAAGAAAATGGAGGG
CATTTCCGACCTGCGAGACGAGAGCGACCGGGAGGGCATCCGTGTTGTCA
TTGAATTGAAGCGCGATGCCATGCCTAGCGTGGTGGAAAATAATCTCTTC
AAAAAGACTGCTTTGCAAAGCTCTTTCCCGGGCAATTTTCTGGCCCTCGC
CAACGATGGGAGGCAGCCGCAGCGCCTGACGCTCAGAGAATCGCTTCAAT
CCTTCATCGACTTCCGCTTCAAGACAATTCGACGGCGCACGCAGCACGAA
TTGAGTAAGTTGGAGTCGCGTGATCACGTGGTCGAGGGTCTTATTCGGGC
GCTAGATCGGATTGACGACGTCGTTGAGCTTGTTCGCCGAGCGAAAGACA
CAGCGGCCGCCAAGGCGACCTTAATGGGATCGCAGTACGACATGTCCGAG
GCTCAGGCTCAAGCAATACTGGCCCTTACCTTGGGGCGGTTGACAGCTTT
AGAGGATGCCAAACTTCGGGCCGAGAGGGAACAGCTCCGGGGTCAAATCG
AGGACTTCCAGGCCATGATGCGACAAGACGAGAAGGTGTTCGATGTCATG
AAACAGGAGCTCCGGGAAATTCGCGCGAAGCACGCGGTGCCCCGTCGGTC
TTCTATCCGCGCCCATGCCGGCGCTTTAACAGAGCTTGACCTTTTGGCCA
ACGATCGCTCAGTCATGATGGTAACCGAGGCTGGCTACATAAAACGCATG
CCTCTTGATGATTTTGAGCAGCAGCGCCGCGGAACTCGAGGCAAGGCAGG
GGCGCGTATGTCCCAGGACGATCTGGTCAACCACTTTTTTGCTTGCAACG
ATCATGATCACGTCGTTTTTATTTCTGAAAAAGGGGTTGCCTTTGGCATC
AGGGCTTTCCAGGTCCCTGTCGCCTCTCGTGTCTCCAAGGGCGTGCCCCT
CCCCCAGGTGCTGCCCCTCTCTTCGGACGACCATGTCTCAAGCGTCATAC
CTCTAGGGGAGAGTTTTCAGGCGGACGAGTTCCTTGTTCTACTAACTAAG
CAGGGCTTTATCAAGAAGACTCCAGTGGATGCTTTCAAAAAATTAACTTC
ACGTGGCCTCATCGCAATCAGTCTAGGCGAAGGCGACACTCTCGGGTGGG
CTCGGCGTTGCACTGACCAGGATGACATCCTAATATCTACACGGAAGGGC
TACTCCATGCGTTTTGCTTCGGCGGATTTGAAACCTACGGGACGCACCTC
TCGGGGTTGCAGCGCCATCAAGCTTCGTAAAACGGACGAGATGGTTGATA
TTACCGTGCTGCGTCCCGATGCTGCTGTCGATGTCGATGGGCCCGGTGAT
TGTGGAAGTGGATCAAATGGACAGTATTTATTGGCCGTGACAACAGCCGG
GTACGGGAAGCGAGTCAGTGCTGACAGTTTCAAGGTACAGAGGCGTGGCG
GTATGGGTGTTATCGCCATCAAATTCAAGGCCGGGAGTGGAGACTCGTTG
GCATGCATGCGCGCTTGCTCCGACGACTACGAGGTTGTGCTGTCTACTCA
AAAAGGTACAATCGTGCGTCAACGCGTGGCTGCTATCGCTTTGCAGAGTC
GCACGGCTACAGGTGTCCGTGTGCAACGCCTAGACGAGGGAAACATTATC
AAGAGCGTGGCAATGCTACCCGCGGATAGCGACGACGATGACGAAGACGG
CTCCCTGGCAAATAAAGCTGATGCCGTTATGAAGGATCTAAGGTACGAAA
ACGAAGCAGCTGTTGTCATGTCCATAGGGAGCCAAACGGGGGTGGTGGAT
GCGTAA

Synonyms

Publications