rna6398, rna6398 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6398
Unique Name	rna6398
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1395
Alignment location	CM002468.1:427339..429975 -

Link to JBrowse

Properties


Property Name	Value
Product	atp-dependent dna helicase
Orig transcript id	gnl\|cribi\|Naga_100047g44.6053.mrna
Orig protein id	gnl\|cribi\|Naga_100047g44.6053
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:427339..429975 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100047g44	gene6182	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24290.1	cds6383	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6398	rna6398-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:427339..429975-
coding sequence from alignment at CM002468.1:427339..429975-

mRNA sequence

>rna6398 ID=rna6398|Name=rna6398|organism=Nannochloropsis gaditana|type=mRNA|length=1395bp
ATGATGATTCAAGAGGACAACGATCGAATAGTCCATACTGAGTTCCCTTT
GTCATCCCGCAAGAAGCGACAGAGAGCGGCTAAGCACAGTATAAATGTGC
TCAAATCTTTTCTTGGATCAAACTATTTGTCGATACCCTTCGCAGTTGCT
GCCGCAGGATCGCTTTTTGGGCCCCTTTTAATTGCGATAATAGCCTTCAT
CAGTGGCTTCGGATGCCTTCTACTCGTCCGGATTCGGAAGGACTTACTGC
GGCAGCACCGACAGATTGATGTGAACGGAGATGGTACATGTGTTGTTGAA
ACATATGCGCAAGTAGCAGGAGTGGTGCTGGGGAGTGCTGGTTATTACGT
GGTCGAGGCATTCTTGATACTCACACAAGCGGGATACTGTATCGGATATG
TTATCTACATGAGCACGGCACTGCGTCAGTTTACTGGAGCATCTTTGTCG
CAACAAGTCATTACATTTGGCCTCCTCTTTCCATCGCTAGTCTGCCTTTG
TCTTGTTCCAGATTTGAAGCACTTCCTACCGTTTAGTTTTGCAAGCAACA
TAGCCTTGCTAATGGGATTTCTTGCCATAATTGCTGCCTGTATTTCACAC
GCCCGTGCCATTGGCACTTTCGACTTGTCCTGGGGGATATCAGACATCCA
CAAGATTCCTTTAGCTTTTGGAAATATTGTAGCATCCTTTGAGGGCATCG
GCACCATTCTCAGCGTGGAGGGAAGCATGGCGAAAGATCAATCGCGGGAA
ACTTATCCGCCGTTGCTTCGAAAGACATTGCTCTTGGTCACGTTGCTTTT
CTCTCTTTTTGGCATAGTGGGCCTTGGCGCATACGGAGAAGAGCTGTGTA
GCGTGATTCTTAACAATATCTCCAGGGGCGCTTACGCGGACGCTGCTCGA
GGTTGTTTAATCGTCGGATTGTTCTTCACATATGGCTTTCAAATGTACCC
AGTCTTCGAAATGATCGATCTACGTCTCTTCCCCAACGAGGGGCCGGACC
ATGCTTCCTTTTCAGAGGTTTCTCCTCTGCTGACAACTGGCGACAACCAT
TCACTTGACATATCGTGGGAGTCTTGTGGAAACGATCTGAGACGTCACAG
GATGAAAATGACGGCAAAGTACGTAGGGGTGCGAGTAGGTTTGGTCCTAA
CAACCTCGATAATTGCCTACTTCGTGCCTGAATTCGAGTTGCTCGTCGCT
TTGATTGGATCGGTTGGCGCGGGAATGCTAGCATTTGTGGTGCCTGGGAT
TTTAGGACTGGTCTTATACCGCAACTCAGCACTTTTCTACCATAAATTGA
GCTACATTTCATTGATAATTTTAGGTGTGGTTGGCGGAAGTATAGGTGCT
GCATATGCATTGCATGACCTTATACAGGGGCATTCTCAATGTTGA

protein sequence of rna6398

>rna6398-protein ID=rna6398-protein|Name=rna6398|organism=Nannochloropsis gaditana|type=polypeptide|length=878bp
AIEGGWQAAMLAPTEILAFQHKDTLQELSRGLKVQIREREAVEETRGTSA
HTDGGSQSGSRPGDDAQRLGGSEEGEGAWRPLRIEVLTSNSKRGKARKVL
LEELRRGEIDILIGTHSLLSDEVVFRDLGLTVIDEEHRFGVRQREKLSND
TNVLYMSATPIPRTLLLTNYGDMEVSRLDEAPARDVQVTTSIFPLTSLVQ
IAERLRKKILENSGEKVFWVLPCIEEKRSSDKDRTEEGEEKRGEAGEECV
KITSVTQRHQAMVELLGEELVGMVHGRMDSESKLQALRDFSAGVTRVLVS
TSVVEVGVDVPDATVCIVEHAEYFGLSQLHQLRGRIGRGYAVSAKADRKV
MDQLTECHCVLAYDDTSPNKEKALQRLLTLKKTVDGFEIAEQDLKLRGPG
EVLGNRQSGHKGFRLVDLAKHEGLLDEANQVARAHADSVVRREEGATVEA
VAHGNVLEYEGVETLLRIFEAKPPSSGENIQRESQPSSSSSSSSSKGSSQ
SKNKFLLEPTASPSSSMKLSMGGMSKKKPPTSLQKSKSAPIANACTAPAP
SSISDLPPGWTTVTYGDRFEISTPPPSSGDEENEGGELTLMPGTEPVLST
RFSIDDLPIPRVSIDLEAEDVTFIIFDTETTGLRAESERIIQLAAKVLSP
SNWGGEEDDEQANELVAAGLACGGEPEDGLLFNAYVDPGFWIPAKITEIT
GISNEFLFRQRARRFEEVWPDFLRWVNAVRGGKPVVLVAHNAGFDHKMLM
FDLRRSNLDERVFKEETQIVGMMDTLAVFRGDEIWSRRSGDGLPIKPNTF
RQGALYRYLLRDDLKNAHSAKGDVLGLEALLKHPFVNKKWRSAGSAHVLE
LGGWRDERATEEVKHRLSIPLMVAKVAK

mRNA from alignment at CM002468.1:427339..429975-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6398 ID=rna6398|Name=rna6398|organism=Nannochloropsis gaditana|type=mRNA|length=2637bp|location=Sequence derived from alignment at CM002468.1:427339..429975- (Nannochloropsis gaditana)
GCGATCGAGGGCGGGTGGCAGGCGGCCATGCTGGCTCCCACGGAGATCCT
GGCCTTCCAGCACAAAGACACGCTACAGGAGCTCTCCAGAGGCTTGAAGG
TCCAAATACGCGAAAGGGAGGCTGTGGAGGAGACGAGAGGGACCAGCGCG
CATACGGACGGTGGGTCTCAGTCCGGCTCGAGGCCTGGCGATGATGCTCA
GAGGTTGGGTGGGAGTGAGGAGGGGGAAGGGGCGTGGCGGCCTCTGCGGA
TCGAAGTCCTGACGAGCAATTCGAAAAGAGGCAAAGCAAGAAAAGTCCTG
CTAGAGGAGCTGCGGCGCGGCGAGATAGATATCCTCATCGGCACCCACTC
CTTACTGAGTGACGAGGTTGTGTTCCGAGACCTGGGCCTGACTGTCATCG
ATGAGGAGCATCGCTTCGGGGTGAGGCAGCGGGAGAAGCTCTCCAACGAC
ACCAACGTGCTCTATATGAGCGCAACACCGATACCTCGGACATTACTTCT
GACAAACTACGGGGACATGGAGGTGAGTCGGTTGGACGAGGCCCCAGCAA
GGGACGTTCAGGTGACCACGTCCATCTTTCCACTGACGAGCTTGGTGCAA
ATCGCTGAGCGTCTACGAAAAAAGATCCTCGAGAACTCAGGGGAAAAGGT
GTTCTGGGTGCTGCCGTGTATCGAGGAGAAACGATCCTCGGATAAAGACA
GGACGGAGGAGGGGGAGGAGAAAAGAGGGGAAGCGGGAGAGGAGTGTGTG
AAAATCACCTCCGTGACGCAAAGACACCAGGCGATGGTCGAACTACTGGG
AGAGGAGCTAGTTGGAATGGTGCATGGGCGTATGGATTCCGAGAGCAAGT
TGCAGGCGCTTCGAGACTTCAGTGCGGGTGTGACGAGGGTGCTGGTGTCG
ACGTCAGTGGTGGAGGTGGGGGTGGATGTGCCGGATGCCACGGTCTGTAT
CGTGGAGCACGCGGAGTACTTCGGTCTCTCCCAATTGCATCAGCTCCGGG
GCCGGATAGGCCGCGGGTACGCTGTCTCAGCCAAGGCAGATCGTAAGGTT
ATGGACCAGCTCACCGAGTGTCACTGTGTGTTAGCCTATGACGACACCAG
TCCCAACAAAGAGAAGGCCCTGCAGCGTCTCCTGACACTGAAAAAGACCG
TCGATGGGTTTGAGATAGCTGAGCAAGATCTTAAGCTTCGGGGTCCAGGA
GAAGTTTTAGGAAACCGGCAGTCGGGTCACAAGGGGTTCCGTCTAGTGGA
CCTGGCTAAACATGAGGGGCTCTTGGACGAGGCCAACCAGGTTGCCCGGG
CCCACGCTGATTCGGTCGTGCGGCGGGAAGAAGGGGCCACGGTGGAAGCA
GTAGCACATGGAAATGTTTTGGAGTACGAAGGCGTCGAAACGCTCCTACG
GATTTTTGAAGCGAAACCCCCTTCGTCGGGGGAAAACATTCAGAGGGAGT
CACAGCCATCTAGCAGCAGTAGCAGTAGCAGCAGCAAAGGTAGCTCTCAG
TCTAAGAACAAATTTTTACTCGAACCCACTGCAAGCCCCTCATCATCCAT
GAAGCTCTCTATGGGAGGCATGTCCAAGAAGAAGCCACCTACTTCTTTGC
AAAAATCGAAATCGGCGCCCATTGCTAACGCGTGCACCGCCCCCGCACCG
TCTTCCATTTCTGACTTACCCCCGGGATGGACAACTGTCACGTACGGAGA
TCGCTTCGAGATCAGCACGCCTCCGCCGTCATCTGGAGACGAAGAGAATG
AGGGAGGAGAGCTGACCCTGATGCCCGGGACGGAGCCCGTATTGAGCACA
CGCTTTTCGATCGACGACCTTCCCATTCCGCGGGTTTCCATCGACCTGGA
AGCGGAGGACGTTACATTTATCATCTTTGACACAGAGACCACGGGGCTCA
GGGCGGAGTCAGAGCGTATCATTCAACTGGCCGCGAAGGTCCTTTCACCT
TCAAACTGGGGGGGGGAAGAGGATGACGAACAAGCAAATGAGCTAGTTGC
TGCAGGCTTGGCTTGTGGAGGTGAGCCCGAGGACGGTTTGTTGTTCAATG
CGTACGTGGATCCGGGCTTCTGGATCCCAGCGAAGATAACTGAAATCACA
GGCATCAGCAATGAATTTCTTTTCCGGCAGCGGGCGCGCCGCTTTGAGGA
GGTATGGCCAGACTTTCTGCGGTGGGTGAACGCAGTGCGGGGAGGAAAAC
CTGTAGTCTTAGTGGCGCATAACGCAGGCTTTGACCATAAAATGCTTATG
TTCGACCTCCGACGATCGAACCTCGATGAACGGGTTTTCAAGGAGGAGAC
GCAGATAGTGGGAATGATGGACACGTTAGCCGTCTTCCGGGGGGACGAGA
TCTGGTCCCGAAGGAGTGGGGATGGTTTACCGATCAAACCCAATACGTTT
CGTCAAGGAGCTCTGTACCGGTACCTGTTGCGCGATGACTTAAAAAATGC
ACACAGCGCCAAGGGCGACGTGCTGGGTTTGGAGGCGCTCCTCAAACACC
CATTTGTAAACAAGAAGTGGCGAAGCGCGGGTTCAGCACATGTCTTGGAA
CTAGGGGGCTGGAGGGATGAGAGAGCCACTGAAGAGGTTAAACATAGGCT
ATCAATACCTTTGATGGTGGCAAAGGTGGCAAAGTAA

Coding sequence (CDS) from alignment at CM002468.1:427339..429975-

>rna6398 ID=rna6398|Name=rna6398|organism=Nannochloropsis gaditana|type=CDS|length=2637bp|location=Sequence derived from alignment at CM002468.1:427339..429975- (Nannochloropsis gaditana)
GCGATCGAGGGCGGGTGGCAGGCGGCCATGCTGGCTCCCACGGAGATCCT
GGCCTTCCAGCACAAAGACACGCTACAGGAGCTCTCCAGAGGCTTGAAGG
TCCAAATACGCGAAAGGGAGGCTGTGGAGGAGACGAGAGGGACCAGCGCG
CATACGGACGGTGGGTCTCAGTCCGGCTCGAGGCCTGGCGATGATGCTCA
GAGGTTGGGTGGGAGTGAGGAGGGGGAAGGGGCGTGGCGGCCTCTGCGGA
TCGAAGTCCTGACGAGCAATTCGAAAAGAGGCAAAGCAAGAAAAGTCCTG
CTAGAGGAGCTGCGGCGCGGCGAGATAGATATCCTCATCGGCACCCACTC
CTTACTGAGTGACGAGGTTGTGTTCCGAGACCTGGGCCTGACTGTCATCG
ATGAGGAGCATCGCTTCGGGGTGAGGCAGCGGGAGAAGCTCTCCAACGAC
ACCAACGTGCTCTATATGAGCGCAACACCGATACCTCGGACATTACTTCT
GACAAACTACGGGGACATGGAGGTGAGTCGGTTGGACGAGGCCCCAGCAA
GGGACGTTCAGGTGACCACGTCCATCTTTCCACTGACGAGCTTGGTGCAA
ATCGCTGAGCGTCTACGAAAAAAGATCCTCGAGAACTCAGGGGAAAAGGT
GTTCTGGGTGCTGCCGTGTATCGAGGAGAAACGATCCTCGGATAAAGACA
GGACGGAGGAGGGGGAGGAGAAAAGAGGGGAAGCGGGAGAGGAGTGTGTG
AAAATCACCTCCGTGACGCAAAGACACCAGGCGATGGTCGAACTACTGGG
AGAGGAGCTAGTTGGAATGGTGCATGGGCGTATGGATTCCGAGAGCAAGT
TGCAGGCGCTTCGAGACTTCAGTGCGGGTGTGACGAGGGTGCTGGTGTCG
ACGTCAGTGGTGGAGGTGGGGGTGGATGTGCCGGATGCCACGGTCTGTAT
CGTGGAGCACGCGGAGTACTTCGGTCTCTCCCAATTGCATCAGCTCCGGG
GCCGGATAGGCCGCGGGTACGCTGTCTCAGCCAAGGCAGATCGTAAGGTT
ATGGACCAGCTCACCGAGTGTCACTGTGTGTTAGCCTATGACGACACCAG
TCCCAACAAAGAGAAGGCCCTGCAGCGTCTCCTGACACTGAAAAAGACCG
TCGATGGGTTTGAGATAGCTGAGCAAGATCTTAAGCTTCGGGGTCCAGGA
GAAGTTTTAGGAAACCGGCAGTCGGGTCACAAGGGGTTCCGTCTAGTGGA
CCTGGCTAAACATGAGGGGCTCTTGGACGAGGCCAACCAGGTTGCCCGGG
CCCACGCTGATTCGGTCGTGCGGCGGGAAGAAGGGGCCACGGTGGAAGCA
GTAGCACATGGAAATGTTTTGGAGTACGAAGGCGTCGAAACGCTCCTACG
GATTTTTGAAGCGAAACCCCCTTCGTCGGGGGAAAACATTCAGAGGGAGT
CACAGCCATCTAGCAGCAGTAGCAGTAGCAGCAGCAAAGGTAGCTCTCAG
TCTAAGAACAAATTTTTACTCGAACCCACTGCAAGCCCCTCATCATCCAT
GAAGCTCTCTATGGGAGGCATGTCCAAGAAGAAGCCACCTACTTCTTTGC
AAAAATCGAAATCGGCGCCCATTGCTAACGCGTGCACCGCCCCCGCACCG
TCTTCCATTTCTGACTTACCCCCGGGATGGACAACTGTCACGTACGGAGA
TCGCTTCGAGATCAGCACGCCTCCGCCGTCATCTGGAGACGAAGAGAATG
AGGGAGGAGAGCTGACCCTGATGCCCGGGACGGAGCCCGTATTGAGCACA
CGCTTTTCGATCGACGACCTTCCCATTCCGCGGGTTTCCATCGACCTGGA
AGCGGAGGACGTTACATTTATCATCTTTGACACAGAGACCACGGGGCTCA
GGGCGGAGTCAGAGCGTATCATTCAACTGGCCGCGAAGGTCCTTTCACCT
TCAAACTGGGGGGGGGAAGAGGATGACGAACAAGCAAATGAGCTAGTTGC
TGCAGGCTTGGCTTGTGGAGGTGAGCCCGAGGACGGTTTGTTGTTCAATG
CGTACGTGGATCCGGGCTTCTGGATCCCAGCGAAGATAACTGAAATCACA
GGCATCAGCAATGAATTTCTTTTCCGGCAGCGGGCGCGCCGCTTTGAGGA
GGTATGGCCAGACTTTCTGCGGTGGGTGAACGCAGTGCGGGGAGGAAAAC
CTGTAGTCTTAGTGGCGCATAACGCAGGCTTTGACCATAAAATGCTTATG
TTCGACCTCCGACGATCGAACCTCGATGAACGGGTTTTCAAGGAGGAGAC
GCAGATAGTGGGAATGATGGACACGTTAGCCGTCTTCCGGGGGGACGAGA
TCTGGTCCCGAAGGAGTGGGGATGGTTTACCGATCAAACCCAATACGTTT
CGTCAAGGAGCTCTGTACCGGTACCTGTTGCGCGATGACTTAAAAAATGC
ACACAGCGCCAAGGGCGACGTGCTGGGTTTGGAGGCGCTCCTCAAACACC
CATTTGTAAACAAGAAGTGGCGAAGCGCGGGTTCAGCACATGTCTTGGAA
CTAGGGGGCTGGAGGGATGAGAGAGCCACTGAAGAGGTTAAACATAGGCT
ATCAATACCTTTGATGGTGGCAAAGGTGGCAAAGTAA

Synonyms

Publications