EWM24290.1, cds6383 (CDS) Nannochloropsis gaditana

Overview
NameEWM24290.1
Unique Namecds6383
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:427339..429975 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24290.1
Productatp-dependent dna helicase
Partialtrue
Orig transcript idgnl|cribi|Naga_100047g44.6053.mrna
GbkeyCDS
End range.
End range429975
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:427339..429975 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0003676nucleic acid binding
GO:0004527exonuclease activity
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR011545DEAD/DEAH_box_helicase_dom
IPR013520Exonuclease_RNaseT/DNA_pol3
IPR012337RNaseH-like_dom
IPR027417P-loop_NTPase
IPR001650Helicase_C
IPR006055Exonuclease
Homology
BLAST of EWM24290.1 vs. NCBI_GenBank
Match: gi|585105682|gb|EWM24290.1| (atp-dependent dna helicase, partial [Nannochloropsis gaditana])

HSP 1 Score: 1790.01 bits (4635), Expect = 0.000e+0
Identity = 878/878 (100.00%), Postives = 878/878 (100.00%), Query Frame = 0
Query:    1 AIEGGWQAAMLAPTEILAFQHKDTLQELSRGLKVQIREREAVEETRGTSAHTDGGSQSGSRPGDDAQRLGGSEEGEGAWRPLRIEVLTSNSKRGKARKVLLEELRRGEIDILIGTHSLLSDEVVFRDLGLTVIDEEHRFGVRQREKLSNDTNVLYMSATPIPRTLLLTNYGDMEVSRLDEAPARDVQVTTSIFPLTSLVQIAERLRKKILENSGEKVFWVLPCIEEKRSSDKDRTEEGEEKRGEAGEECVKITSVTQRHQAMVELLGEELVGMVHGRMDSESKLQALRDFSAGVTRVLVSTSVVEVGVDVPDATVCIVEHAEYFGLSQLHQLRGRIGRGYAVSAKADRKVMDQLTECHCVLAYDDTSPNKEKALQRLLTLKKTVDGFEIAEQDLKLRGPGEVLGNRQSGHKGFRLVDLAKHEGLLDEANQVARAHADSVVRREEGATVEAVAHGNVLEYEGVETLLRIFEAKPPSSGENIQRESQPSSSSSSSSSKGSSQSKNKFLLEPTASPSSSMKLSMGGMSKKKPPTSLQKSKSAPIANACTAPAPSSISDLPPGWTTVTYGDRFEISTPPPSSGDEENEGGELTLMPGTEPVLSTRFSIDDLPIPRVSIDLEAEDVTFIIFDTETTGLRAESERIIQLAAKVLSPSNWGGEEDDEQANELVAAGLACGGEPEDGLLFNAYVDPGFWIPAKITEITGISNEFLFRQRARRFEEVWPDFLRWVNAVRGGKPVVLVAHNAGFDHKMLMFDLRRSNLDERVFKEETQIVGMMDTLAVFRGDEIWSRRSGDGLPIKPNTFRQGALYRYLLRDDLKNAHSAKGDVLGLEALLKHPFVNKKWRSAGSAHVLELGGWRDERATEEVKHRLSIPLMVAKVAK 878
            AIEGGWQAAMLAPTEILAFQHKDTLQELSRGLKVQIREREAVEETRGTSAHTDGGSQSGSRPGDDAQRLGGSEEGEGAWRPLRIEVLTSNSKRGKARKVLLEELRRGEIDILIGTHSLLSDEVVFRDLGLTVIDEEHRFGVRQREKLSNDTNVLYMSATPIPRTLLLTNYGDMEVSRLDEAPARDVQVTTSIFPLTSLVQIAERLRKKILENSGEKVFWVLPCIEEKRSSDKDRTEEGEEKRGEAGEECVKITSVTQRHQAMVELLGEELVGMVHGRMDSESKLQALRDFSAGVTRVLVSTSVVEVGVDVPDATVCIVEHAEYFGLSQLHQLRGRIGRGYAVSAKADRKVMDQLTECHCVLAYDDTSPNKEKALQRLLTLKKTVDGFEIAEQDLKLRGPGEVLGNRQSGHKGFRLVDLAKHEGLLDEANQVARAHADSVVRREEGATVEAVAHGNVLEYEGVETLLRIFEAKPPSSGENIQRESQPSSSSSSSSSKGSSQSKNKFLLEPTASPSSSMKLSMGGMSKKKPPTSLQKSKSAPIANACTAPAPSSISDLPPGWTTVTYGDRFEISTPPPSSGDEENEGGELTLMPGTEPVLSTRFSIDDLPIPRVSIDLEAEDVTFIIFDTETTGLRAESERIIQLAAKVLSPSNWGGEEDDEQANELVAAGLACGGEPEDGLLFNAYVDPGFWIPAKITEITGISNEFLFRQRARRFEEVWPDFLRWVNAVRGGKPVVLVAHNAGFDHKMLMFDLRRSNLDERVFKEETQIVGMMDTLAVFRGDEIWSRRSGDGLPIKPNTFRQGALYRYLLRDDLKNAHSAKGDVLGLEALLKHPFVNKKWRSAGSAHVLELGGWRDERATEEVKHRLSIPLMVAKVAK
Sbjct:    1 AIEGGWQAAMLAPTEILAFQHKDTLQELSRGLKVQIREREAVEETRGTSAHTDGGSQSGSRPGDDAQRLGGSEEGEGAWRPLRIEVLTSNSKRGKARKVLLEELRRGEIDILIGTHSLLSDEVVFRDLGLTVIDEEHRFGVRQREKLSNDTNVLYMSATPIPRTLLLTNYGDMEVSRLDEAPARDVQVTTSIFPLTSLVQIAERLRKKILENSGEKVFWVLPCIEEKRSSDKDRTEEGEEKRGEAGEECVKITSVTQRHQAMVELLGEELVGMVHGRMDSESKLQALRDFSAGVTRVLVSTSVVEVGVDVPDATVCIVEHAEYFGLSQLHQLRGRIGRGYAVSAKADRKVMDQLTECHCVLAYDDTSPNKEKALQRLLTLKKTVDGFEIAEQDLKLRGPGEVLGNRQSGHKGFRLVDLAKHEGLLDEANQVARAHADSVVRREEGATVEAVAHGNVLEYEGVETLLRIFEAKPPSSGENIQRESQPSSSSSSSSSKGSSQSKNKFLLEPTASPSSSMKLSMGGMSKKKPPTSLQKSKSAPIANACTAPAPSSISDLPPGWTTVTYGDRFEISTPPPSSGDEENEGGELTLMPGTEPVLSTRFSIDDLPIPRVSIDLEAEDVTFIIFDTETTGLRAESERIIQLAAKVLSPSNWGGEEDDEQANELVAAGLACGGEPEDGLLFNAYVDPGFWIPAKITEITGISNEFLFRQRARRFEEVWPDFLRWVNAVRGGKPVVLVAHNAGFDHKMLMFDLRRSNLDERVFKEETQIVGMMDTLAVFRGDEIWSRRSGDGLPIKPNTFRQGALYRYLLRDDLKNAHSAKGDVLGLEALLKHPFVNKKWRSAGSAHVLELGGWRDERATEEVKHRLSIPLMVAKVAK 878          
BLAST of EWM24290.1 vs. NCBI_GenBank
Match: gi|764609253|ref|WP_044429185.1| (DNA helicase RecG [Skermanella aerolata] >gi|763834817|gb|KJB95270.1| ATP-dependent DNA helicase RecG [Skermanella aerolata KACC 11604])

HSP 1 Score: 304.679 bits (779), Expect = 4.148e-88
Identity = 190/440 (43.18%), Postives = 240/440 (54.55%), Query Frame = 0
Query:    1 AIEGGWQAAMLAPTEILAFQHKDTLQELSRGLKVQIREREAVEETRGTSAHTDGGSQSGSRPGDDAQRLGGSEEGEGAWRPLRIEVLTSNSKRGKARKVLLEELRRGEIDILIGTHSLLSDEVVFRDLGLTVIDEEHRFGVRQREKLS---NDTNVLYMSATPIPRTLLLTNYGDMEVSRLDEAPARDVQVTTSIFPLTSLVQIAERLRKKILENSGEKVFWVLPCIEEKRSSDKDRTEEGEEKRGEAGEECVKITSVTQRHQAMVELLGEELVGMVHGRMDSESKLQALRDFSAGVTRVLVSTSVVEVGVDVPDATVCIVEHAEYFGLSQLHQLRGRIGRGYAVSAKADRKVMDQLTECHCVLAYDDTSPNKEKALQRLLTLKKTVDGFEIAEQDLKLRGPGEVLGNRQSGHKGFRLVDLAKHEGLLDEANQVARAHAD 437
            A+E G QAA++APTEILA QH +TL  L+    V                                                R+ +LT   K GKAR  + E L  GEIDI IGTH+L  D+V FRDL + VIDE+HRFGV QR +LS      +VL M+ATPIPRTL LT YGDM+VSRL E P     +TT   PL  L ++   +++KI E  G +V+WV P ++E                     E V + + T+RH  +  ++GE  VG+VHG+M    K   +  F+AG   VLV+T+V+EVGV+VP+A+V ++EHAE FGL+QLHQLRGRIGRG A S               C+L YD  SP  E +  RL  +K T DGF IAE+DL+LRG GEVLG RQSG   FRL DLA H  LL  A   AR   D
Sbjct:  310 AVETGAQAALMAPTEILARQHFETLAPLADAAGV------------------------------------------------RLGILTGRDK-GKARAAIYERLASGEIDIAIGTHALFQDDVAFRDLAMAVIDEQHRFGVHQRLQLSAKGRSVDVLVMTATPIPRTLTLTAYGDMDVSRLTEKPPGRKPITTITIPLERLEEVIAGIQRKITE--GARVYWVCPLVDES--------------------EVVDLAAATERHALLRSMIGER-VGLVHGKMKPTDKDAVMAAFAAGDLDVLVATTVIEVGVNVPEASVMVIEHAERFGLAQLHQLRGRIGRGTAAST--------------CILLYD--SPLSETSKARLAIMKGTEDGFLIAEEDLRLRGAGEVLGTRQSGMPEFRLADLAVHGELLAAARDDARLIMD 661          
BLAST of EWM24290.1 vs. NCBI_GenBank
Match: gi|517517629|ref|WP_018687837.1| (ATP-dependent DNA helicase RecG [Ahrensia kielensis])

HSP 1 Score: 301.982 bits (772), Expect = 4.431e-87
Identity = 192/475 (40.42%), Postives = 260/475 (54.74%), Query Frame = 0
Query:    1 AIEGGWQAAMLAPTEILAFQHKDTLQELSRGLKVQIREREAVEETRGTSAHTDGGSQSGSRPGDDAQRLGGSEEGEGAWRPLRIEVLTSNSKRGKARKVLLEELRRGEIDILIGTHSLLSDEVVFRDLGLTVIDEEHRFGVRQREKLSND---TNVLYMSATPIPRTLLLTNYGDMEVSRLDEAPARDVQVTTSIFPLTSLVQIAERLRKKILENSGEKVFWVLPCIEEKRSSDKDRTEEGEEKRGEAGEECVKITSVTQRHQAMVELLGEELVGMVHGRMDSESKLQALRDFSAGVTRVLVSTSVVEVGVDVPDATVCIVEHAEYFGLSQLHQLRGRIGRGYAVSAKADRKVMDQLTECHCVLAYDDTSPNKEKALQRLLTLKKTVDGFEIAEQDLKLRGPGEVLGNRQSGHKGFRLVDLAKHEGLLDEANQVAR--AHADSVVRREEGATVEAVAHGNVLEYEGVETLLRIFE 470
            A+E G Q A++APTE+LA QH  T++ +                                     A+R G           LR+++LT   K G  R+ +L  L  GE+DILIGTH++  + VVF+DLGL V+DE+HRFGV QR  L++    T++L M+ATPIPRTL+LT+YGDM+VSRLDE P     + T   PL  + +I  R+   I E  G+K++W+ P +EE                     E + +TSV QRH+ +    G   VG+VHG+M    K  A+  F +G TR+LV+T+V+EVGVDVPDAT+ ++EHAE FGLSQLHQLRGR+GRG            DQ  +  C+L Y D  P  E +  RL  +++T DGF IAE+DL+LRG GEVLG RQSG  GFRL  +  H  LL+ A   AR   H D  +  + G              + + TLL +FE
Sbjct:  318 AVEAGTQGALMAPTEVLARQHFATIKPI-------------------------------------AERAG-----------LRVDLLTGREK-GVVRRDMLAALAAGELDILIGTHAIFQEGVVFKDLGLAVVDEQHRFGVHQRLLLASKGQATDMLVMTATPIPRTLVLTHYGDMDVSRLDEKPVGRKPIKTVALPLGRIEEITTRMGDAIKE--GQKIYWICPLVEEN--------------------EDLGLTSVEQRHKELSSRFGSN-VGLVHGQMKGAEKDAAMAAFKSGETRILVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRG------------DQ--DSSCLLLYKD--PLGETSRARLEVMRQTEDGFRIAEEDLQLRGEGEVLGTRQSGMAGFRLARMEAHGHLLEIARDDARLIIHNDPKLETQRG--------------QALRTLLYLFE 690          
BLAST of EWM24290.1 vs. NCBI_GenBank
Match: gi|928974609|ref|WP_053999030.1| (ATP-dependent DNA helicase RecG [Ahrensia marina] >gi|928225324|gb|KPB01387.1| ATP-dependent DNA helicase RecG [Ahrensia marina])

HSP 1 Score: 301.597 bits (771), Expect = 6.756e-87
Identity = 192/475 (40.42%), Postives = 260/475 (54.74%), Query Frame = 0
Query:    1 AIEGGWQAAMLAPTEILAFQHKDTLQELSRGLKVQIREREAVEETRGTSAHTDGGSQSGSRPGDDAQRLGGSEEGEGAWRPLRIEVLTSNSKRGKARKVLLEELRRGEIDILIGTHSLLSDEVVFRDLGLTVIDEEHRFGVRQREKLSND---TNVLYMSATPIPRTLLLTNYGDMEVSRLDEAPARDVQVTTSIFPLTSLVQIAERLRKKILENSGEKVFWVLPCIEEKRSSDKDRTEEGEEKRGEAGEECVKITSVTQRHQAMVELLGEELVGMVHGRMDSESKLQALRDFSAGVTRVLVSTSVVEVGVDVPDATVCIVEHAEYFGLSQLHQLRGRIGRGYAVSAKADRKVMDQLTECHCVLAYDDTSPNKEKALQRLLTLKKTVDGFEIAEQDLKLRGPGEVLGNRQSGHKGFRLVDLAKHEGLLDEANQVAR--AHADSVVRREEGATVEAVAHGNVLEYEGVETLLRIFE 470
            A+E G Q A++APTE+LA QH  T++ +                                     AQ  G           LR+++LT   K G  R+ +L  L  G+IDILIGTH++  + VVF+DLGL V+DE+HRFGV QR  L++    T++L M+ATPIPRTL+LT+YGDM+VSRLDE P     + T   PL  + +I  R+   I E   +K++W+ P +EE                     + +++TSV QRH+ +    G + VG+VHG+M    K  A+  F +G TR+LV+T+V+EVGVDVPDAT+ ++EHAE FGLSQLHQLRGR+GRG       DR       E  C+L Y D  P  E +  RL  +++T DGF IAE+DL+LRG GEVLG RQSG  GFRL  +  H  LL+ A   AR   H D  +  E G              + + TLL +FE
Sbjct:  318 AVEAGAQGALMAPTEVLARQHFATIKPI-------------------------------------AQSAG-----------LRVDLLTGREK-GAVRRDMLAALAAGDIDILIGTHAIFQEGVVFKDLGLAVVDEQHRFGVHQRLLLASKGQATDMLVMTATPIPRTLVLTHYGDMDVSRLDEKPVGRKPIKTVALPLGRIEEIIARMGNAIKEE--QKIYWICPLVEEN--------------------DDLELTSVEQRHKDLASRFGTD-VGLVHGQMKGAEKDAAMAAFKSGETRILVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRG-------DR-------ESSCLLLYKD--PLGETSRARLDVMRQTEDGFRIAEEDLRLRGEGEVLGTRQSGMAGFRLARMEAHGHLLEIARDDARLIIHNDPKLETERG--------------QALRTLLYLFE 690          
BLAST of EWM24290.1 vs. NCBI_GenBank
Match: gi|1001891549|ref|WP_061345404.1| (DNA helicase RecG [Ochrobactrum anthropi] >gi|1001191088|gb|KXO78515.1| ATP-dependent DNA helicase RecG [Ochrobactrum anthropi])

HSP 1 Score: 298.516 bits (763), Expect = 7.903e-86
Identity = 178/436 (40.83%), Postives = 248/436 (56.88%), Query Frame = 0
Query:    1 AIEGGWQAAMLAPTEILAFQHKDTLQELSRGLKVQIREREAVEETRGTSAHTDGGSQSGSRPGDDAQRLGGSEEGEGAWRPLRIEVLTSNSKRGKARKVLLEELRRGEIDILIGTHSLLSDEVVFRDLGLTVIDEEHRFGVRQREKLS---NDTNVLYMSATPIPRTLLLTNYGDMEVSRLDEAPARDVQVTTSIFPLTSLVQIAERLRKKILENSGEKVFWVLPCIEEKRSSDKDRTEEGEEKRGEAGEECVKITSVTQRHQAMVELLGEELVGMVHGRMDSESKLQALRDFSAGVTRVLVSTSVVEVGVDVPDATVCIVEHAEYFGLSQLHQLRGRIGRGYAVSAKADRKVMDQLTECHCVLAYDDTSPNKEKALQRLLTLKKTVDGFEIAEQDLKLRGPGEVLGNRQSGHKGFRLVDLAKHEGLLDEANQVAR 433
            A E G Q+A++APTE+LA QH  T+  L+              E  G  A                                    L +  ++G+ R  +LE L+ GEIDI+IGTH+L  ++V + DL L +IDE+HRFGV QR  L+   +  ++L M+ATPIPRTL+LT +GDM+VS+L E PA    +TT+I P+  + ++ ER+RK + E  G+K++W+ P +EE                     E V++TS  +R +++  + GE  +G++HGRM+   K +A+R F  G TRVLV+T+V+EVGVDVPDAT+ ++EHAE FGLSQLHQLRGR+GRG   S               C+L Y    P  E A  RL  +++T DGF IAE+DLKLRG GE+LG RQSG  GFRL  +  H  LL+ A + AR
Sbjct:  319 AAESGGQSALMAPTEVLARQHFATIAPLA--------------EKAGLKA-----------------------------------ALLTGREKGRDRNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVLVIIDEQHRFGVHQRLMLTAKGSAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPAGRQPITTAIVPMERMGELVERIRKAVGE--GQKIYWICPLVEES--------------------EVVELTSAEERFESLKPVFGER-IGLIHGRMNGAEKDEAMRAFKQGETRVLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPST--------------CLLLYK--GPLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHRDLLEIARKDAR 666          
BLAST of EWM24290.1 vs. NCBI_GenBank
Match: gi|665431639|gb|KEY02858.1| (ATP-dependent DNA helicase RecG, partial [Brucella ceti B1/94])

HSP 1 Score: 292.352 bits (747), Expect = 1.800e-85
Identity = 174/436 (39.91%), Postives = 245/436 (56.19%), Query Frame = 0
Query:    1 AIEGGWQAAMLAPTEILAFQHKDTLQELSRGLKVQIREREAVEETRGTSAHTDGGSQSGSRPGDDAQRLGGSEEGEGAWRPLRIEVLTSNSKRGKARKVLLEELRRGEIDILIGTHSLLSDEVVFRDLGLTVIDEEHRFGVRQREKLS---NDTNVLYMSATPIPRTLLLTNYGDMEVSRLDEAPARDVQVTTSIFPLTSLVQIAERLRKKILENSGEKVFWVLPCIEEKRSSDKDRTEEGEEKRGEAGEECVKITSVTQRHQAMVELLGEELVGMVHGRMDSESKLQALRDFSAGVTRVLVSTSVVEVGVDVPDATVCIVEHAEYFGLSQLHQLRGRIGRGYAVSAKADRKVMDQLTECHCVLAYDDTSPNKEKALQRLLTLKKTVDGFEIAEQDLKLRGPGEVLGNRQSGHKGFRLVDLAKHEGLLDEANQVAR 433
            A E G Q+A++APTE+LA QH  T+  L+              E  G  A                                    L +  ++G+ R  +LE L+ GEIDI+IGTH+L  ++V + DL   +IDE+HRFGV QR  L+   +  ++L M+ATPIPRTL+LT +GDM+VS+L E P     +TT+I P+  + ++ ER+RK + E+  +K++W+ P +EE                     E V++TS  +R +++  + GE  +G++HGRM    K +A+R F  G TR+LV+T+V+EVGVDVPDAT+ ++EHAE FGLSQLHQLRGR+GRG   S               C+L Y    P  E A  RL  +++T DGF IAE+DLKLRG GE+LG RQSG  GFRL  +  H  LL+ A + AR
Sbjct:  133 AAESGGQSALMAPTEVLARQHFATIAPLA--------------EKAGLKA-----------------------------------ALLTGREKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKGSAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKAVSED--QKIYWICPLVEES--------------------EVVELTSAEERFESLKSVFGER-IGLIHGRMSGAEKDEAMRAFKQGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPST--------------CLLLYK--GPLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEIARKDAR 480          
BLAST of EWM24290.1 vs. NCBI_GenBank
Match: gi|1103227422|ref|WP_071633731.1| (DNA helicase RecG [Ochrobactrum cytisi] >gi|1102134637|gb|OIS91182.1| ATP-dependent DNA helicase RecG [Ochrobactrum cytisi])

HSP 1 Score: 297.36 bits (760), Expect = 2.421e-85
Identity = 177/436 (40.60%), Postives = 247/436 (56.65%), Query Frame = 0
Query:    1 AIEGGWQAAMLAPTEILAFQHKDTLQELSRGLKVQIREREAVEETRGTSAHTDGGSQSGSRPGDDAQRLGGSEEGEGAWRPLRIEVLTSNSKRGKARKVLLEELRRGEIDILIGTHSLLSDEVVFRDLGLTVIDEEHRFGVRQREKLS---NDTNVLYMSATPIPRTLLLTNYGDMEVSRLDEAPARDVQVTTSIFPLTSLVQIAERLRKKILENSGEKVFWVLPCIEEKRSSDKDRTEEGEEKRGEAGEECVKITSVTQRHQAMVELLGEELVGMVHGRMDSESKLQALRDFSAGVTRVLVSTSVVEVGVDVPDATVCIVEHAEYFGLSQLHQLRGRIGRGYAVSAKADRKVMDQLTECHCVLAYDDTSPNKEKALQRLLTLKKTVDGFEIAEQDLKLRGPGEVLGNRQSGHKGFRLVDLAKHEGLLDEANQVAR 433
            A E G Q+A++APTE+LA QH  T+  L+              E  G  A                                    L +  ++G+ R  +LE L+ GEIDI+IGTH+L  ++V + DL L +IDE+HRFGV QR  L+   +  ++L M+ATPIPRTL+LT +GDM+VS+L E PA    +TT+I P+  + ++ ER+RK + E  G+K++W+ P +EE                     E V++TS  +R +++  + G+  +G++HGRM    K +A+R F  G TRVLV+T+V+EVGVDVPDAT+ ++EHAE FGLSQLHQLRGR+GRG   S               C+L Y    P  E A  RL  +++T DGF IAE+DLKLRG GE+LG RQSG  GFRL  +  H  LL+ A + AR
Sbjct:  319 AAESGGQSALMAPTEVLARQHFATITPLA--------------EKAGLKA-----------------------------------ALLTGREKGRDRNAVLEGLKTGEIDIVIGTHALFQEKVEYHDLVLVIIDEQHRFGVHQRLMLTAKGSAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPAGRQPITTAIVPMERMSELVERIRKAVAE--GQKIYWICPLVEES--------------------EVVELTSAEERFESLKPVFGDR-IGLIHGRMSGAEKDEAMRAFKQGETRVLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPST--------------CLLLYK--GPLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEIARKDAR 666          
BLAST of EWM24290.1 vs. NCBI_GenBank
Match: gi|640665009|ref|WP_025090210.1| (DNA helicase RecG [Ochrobactrum intermedium])

HSP 1 Score: 296.975 bits (759), Expect = 2.766e-85
Identity = 177/436 (40.60%), Postives = 248/436 (56.88%), Query Frame = 0
Query:    1 AIEGGWQAAMLAPTEILAFQHKDTLQELSRGLKVQIREREAVEETRGTSAHTDGGSQSGSRPGDDAQRLGGSEEGEGAWRPLRIEVLTSNSKRGKARKVLLEELRRGEIDILIGTHSLLSDEVVFRDLGLTVIDEEHRFGVRQREKLS---NDTNVLYMSATPIPRTLLLTNYGDMEVSRLDEAPARDVQVTTSIFPLTSLVQIAERLRKKILENSGEKVFWVLPCIEEKRSSDKDRTEEGEEKRGEAGEECVKITSVTQRHQAMVELLGEELVGMVHGRMDSESKLQALRDFSAGVTRVLVSTSVVEVGVDVPDATVCIVEHAEYFGLSQLHQLRGRIGRGYAVSAKADRKVMDQLTECHCVLAYDDTSPNKEKALQRLLTLKKTVDGFEIAEQDLKLRGPGEVLGNRQSGHKGFRLVDLAKHEGLLDEANQVAR 433
            A E G Q+A++APTE+LA QH  T+  L+              E  G  A                                    L +  ++G+ R  +LE L+ GEIDI+IGTH+L  ++V + DL L +IDE+HRFGV QR  L+   +  ++L M+ATPIPRTL+LT +GDM+VS+L E PA    +TT+I P+  + ++ ER+RK + E  G+K++W+ P +EE                     E V++TS  +R +++  + G+  +G++HGRM+   K +A+R F  G TRVLV+T+V+EVGVDVPDAT+ ++EHAE FGLSQLHQLRGR+GRG   S               C+L Y    P  E A  RL  +++T DGF IAE+DLKLRG GE+LG RQSG  GFRL  +  H  LL+ A + AR
Sbjct:  319 AAESGGQSALMAPTEVLARQHFATIAPLA--------------EKAGLKA-----------------------------------ALLTGREKGRDRSAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVLVIIDEQHRFGVHQRLMLTAKGSAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPAGRQPITTAIVPMERMGELVERIRKAVSE--GQKIYWICPLVEES--------------------EVVELTSAEERFESLKPVFGDR-IGLIHGRMNGAEKDEAMRAFKQGETRVLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPST--------------CLLLYK--GPLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEIARKDAR 666          
BLAST of EWM24290.1 vs. NCBI_GenBank
Match: gi|493517145|ref|WP_006471375.1| (MULTISPECIES: DNA helicase RecG [Ochrobactrum] >gi|443486639|gb|ELT49413.1| ATP-dependent DNA helicase RecG [Ochrobactrum intermedium M86] >gi|542083774|gb|ERI15175.1| ATP-dependent DNA helicase RecG [Ochrobactrum sp. EGD-AQ16] >gi|1025935102|gb|OAB82917.1| ATP-dependent DNA helicase RecG [Ochrobactrum intermedium] >gi|1026783651|gb|OAE42075.1| ATP-dependent DNA helicase RecG [Ochrobactrum intermedium] >gi|1145646613|gb|OOC58117.1| ATP-dependent DNA helicase RecG [Ochrobactrum intermedium M86])

HSP 1 Score: 296.975 bits (759), Expect = 3.539e-85
Identity = 177/436 (40.60%), Postives = 248/436 (56.88%), Query Frame = 0
Query:    1 AIEGGWQAAMLAPTEILAFQHKDTLQELSRGLKVQIREREAVEETRGTSAHTDGGSQSGSRPGDDAQRLGGSEEGEGAWRPLRIEVLTSNSKRGKARKVLLEELRRGEIDILIGTHSLLSDEVVFRDLGLTVIDEEHRFGVRQREKLS---NDTNVLYMSATPIPRTLLLTNYGDMEVSRLDEAPARDVQVTTSIFPLTSLVQIAERLRKKILENSGEKVFWVLPCIEEKRSSDKDRTEEGEEKRGEAGEECVKITSVTQRHQAMVELLGEELVGMVHGRMDSESKLQALRDFSAGVTRVLVSTSVVEVGVDVPDATVCIVEHAEYFGLSQLHQLRGRIGRGYAVSAKADRKVMDQLTECHCVLAYDDTSPNKEKALQRLLTLKKTVDGFEIAEQDLKLRGPGEVLGNRQSGHKGFRLVDLAKHEGLLDEANQVAR 433
            A E G Q+A++APTE+LA QH  T+  L+              E  G  A                                    L +  ++G+ R  +LE L+ GEIDI+IGTH+L  ++V + DL L +IDE+HRFGV QR  L+   +  ++L M+ATPIPRTL+LT +GDM+VS+L E PA    +TT+I P+  + ++ ER+RK + E  G+K++W+ P +EE                     E V++TS  +R +++  + G+  +G++HGRM+   K +A+R F  G TRVLV+T+V+EVGVDVPDAT+ ++EHAE FGLSQLHQLRGR+GRG   S               C+L Y    P  E A  RL  +++T DGF IAE+DLKLRG GE+LG RQSG  GFRL  +  H  LL+ A + AR
Sbjct:  319 AAESGGQSALMAPTEVLARQHFATIAPLA--------------EKAGLKA-----------------------------------ALLTGREKGRDRNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVLVIIDEQHRFGVHQRLMLTAKGSAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPAGRQPITTAIVPMERMGELVERIRKAVGE--GQKIYWICPLVEES--------------------EVVELTSAEERFESLKPVFGDR-IGLIHGRMNGAEKDEAMRAFKQGETRVLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPST--------------CLLLYK--GPLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEIARKDAR 666          
BLAST of EWM24290.1 vs. NCBI_GenBank
Match: gi|548358671|gb|ERL99972.1| (ATP-dependent DNA helicase RecG [Ochrobactrum intermedium 229E])

HSP 1 Score: 296.59 bits (758), Expect = 3.898e-85
Identity = 177/436 (40.60%), Postives = 248/436 (56.88%), Query Frame = 0
Query:    1 AIEGGWQAAMLAPTEILAFQHKDTLQELSRGLKVQIREREAVEETRGTSAHTDGGSQSGSRPGDDAQRLGGSEEGEGAWRPLRIEVLTSNSKRGKARKVLLEELRRGEIDILIGTHSLLSDEVVFRDLGLTVIDEEHRFGVRQREKLS---NDTNVLYMSATPIPRTLLLTNYGDMEVSRLDEAPARDVQVTTSIFPLTSLVQIAERLRKKILENSGEKVFWVLPCIEEKRSSDKDRTEEGEEKRGEAGEECVKITSVTQRHQAMVELLGEELVGMVHGRMDSESKLQALRDFSAGVTRVLVSTSVVEVGVDVPDATVCIVEHAEYFGLSQLHQLRGRIGRGYAVSAKADRKVMDQLTECHCVLAYDDTSPNKEKALQRLLTLKKTVDGFEIAEQDLKLRGPGEVLGNRQSGHKGFRLVDLAKHEGLLDEANQVAR 433
            A E G Q+A++APTE+LA QH  T+  L+              E  G  A                                    L +  ++G+ R  +LE L+ GEIDI+IGTH+L  ++V + DL L +IDE+HRFGV QR  L+   +  ++L M+ATPIPRTL+LT +GDM+VS+L E PA    +TT+I P+  + ++ ER+RK + E  G+K++W+ P +EE                     E V++TS  +R +++  + G+  +G++HGRM+   K +A+R F  G TRVLV+T+V+EVGVDVPDAT+ ++EHAE FGLSQLHQLRGR+GRG   S               C+L Y    P  E A  RL  +++T DGF IAE+DLKLRG GE+LG RQSG  GFRL  +  H  LL+ A + AR
Sbjct:  321 AAESGGQSALMAPTEVLARQHFATIAPLA--------------EKAGLKA-----------------------------------ALLTGREKGRDRNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVLVIIDEQHRFGVHQRLMLTAKGSAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPAGRQPITTAIVPMERMGELVERIRKAVGE--GQKIYWICPLVEES--------------------EVVELTSAEERFESLKPVFGDR-IGLIHGRMNGAEKDEAMRAFKQGETRVLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPST--------------CLLLYK--GPLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEIARKDAR 668          
The following BLAST results are available for this feature:
BLAST of EWM24290.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105682|gb|EWM24290.1|0.000e+0100.00atp-dependent dna helicase, partial [Nannochlorops... [more]
gi|764609253|ref|WP_044429185.1|4.148e-8843.18DNA helicase RecG [Skermanella aerolata] >gi|76383... [more]
gi|517517629|ref|WP_018687837.1|4.431e-8740.42ATP-dependent DNA helicase RecG [Ahrensia kielensi... [more]
gi|928974609|ref|WP_053999030.1|6.756e-8740.42ATP-dependent DNA helicase RecG [Ahrensia marina] ... [more]
gi|1001891549|ref|WP_061345404.1|7.903e-8640.83DNA helicase RecG [Ochrobactrum anthropi] >gi|1001... [more]
gi|665431639|gb|KEY02858.1|1.800e-8539.91ATP-dependent DNA helicase RecG, partial [Brucella... [more]
gi|1103227422|ref|WP_071633731.1|2.421e-8540.60DNA helicase RecG [Ochrobactrum cytisi] >gi|110213... [more]
gi|640665009|ref|WP_025090210.1|2.766e-8540.60DNA helicase RecG [Ochrobactrum intermedium][more]
gi|493517145|ref|WP_006471375.1|3.539e-8540.60MULTISPECIES: DNA helicase RecG [Ochrobactrum] >gi... [more]
gi|548358671|gb|ERL99972.1|3.898e-8540.60ATP-dependent DNA helicase RecG [Ochrobactrum inte... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6398rna6398Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications