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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100054g2.5581.mrna |
| Orig protein id | gnl|cribi|Naga_100054g2.5581 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002464.1 | supercontig | CM002464.1:380085..383048 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4796 ID=rna4796|Name=rna4796|organism=Nannochloropsis gaditana|type=mRNA|length=2471bp
ACCTGCGGTTTGAAAGAAAGCTAGGATTCAGGGCGTCGGCTGCGAAATTG
GCCTTTTTTGTTTTATTTCGCTTTTATCGTAAAGTTGAAGGGTCCTTACT
GAGGACTCCTCAACCTGTCCATATATCATTTCCCATCGCAACTCGCCGCA
GGCATGCCAAAACCACCAATACCGTCGCAATCAAACCGACGACAATGGGG
GAGCATGGAGTTCACCATGGTGATTCTAGCAGGTCTCGGAGCGACCATTT
TTTGGGGGCATTGGCAGAAAGGTGCAATCCTCAATCCGCCTTATTGTGCA
TGGAGATTTGTAAGCAATTTCGCGTCCTGGAACGTCGCCTTTCCGGACTC
CACCTCCATCTATCACGTCTCTCTGATGTACATCAGACGAGGAGAGGAGA
TCAAGATTTCCTCGTCCTCCCTTCCGTATGCCCGGTATTTCTCCTTTCAA
TCCTATTCCATCCCGGATTTTGTCTCCTCGGCTAGCCTCCGGGACGTGGA
TATCATTCCCTCCGGGAACGGGCCCAACTGCTACACAAATTTGACGGCGG
CCATGGCGGGGGCGAAGCAAGGAGGGTATGAGGTGGTGGTCACGTCCCAC
GGGGACCATGGCCATGCGAACGAATTGCGGGCCCTGGCGGACGACCGAGC
CTCCGGGTATTTTATTCTATTCTTCCGTATCTACCAGGACCGCGTGGGCA
GCCTCCCGCCCATGTCGGAACTCGCGGATGACATGGGGGAGTGCTTTGGT
CCGCGCGGCCGGTATCCGACAGAGACACCGCAAGAGTGGGGCTGGGCATG
CCCGCCCTCGGTGGCCGTGAAGCGCCTGTCCAGGAGAGTTGGCGGCGGGA
AATTTGAGACCTTGCCCCTTTGTGGGTACCGCCGCAAGCATGGGATCGTC
TACAACGACGTGACTCCGCCCGTGATTGCATGTCCGTCCGTCCGCGCCCC
CAACTTGCCCTTCAATTTCTTCCTGCCGTCGCCTGATTACATCAAGCAGA
AATTCGCGAACAAGGATGCCAAGTACCTTTTCTCCTGTGCCGAGGCGCCA
TGGGTGCCTGAGAAGAGCAAGGGGGCCGGAGGGTGGAGTTTCTGGAAGGG
ACAAAGAAGCCCGGTGGAGGAGGGCCGAGAAAGGGAAGAGAATAGGGAAG
GAGCGACAAAAAAAGAGACCCATAGGAAGCCTGTTGCCAGGGACAAGCCG
TCGGAAGATGGCGAGGTGGAGGGAGAGGGGCGGAAAAGGGCCCCGGAGGC
GGGACGTGGGAGCGGAGAGGGTCGCGAGCTTTGGGCGCGTGTGACAGGGC
GCCTGCCTCGGACCGCCAACAGTTTGTACGAGCCTCCCTTCATCGCCAAT
TTCAGCGACTATGACGTACGCTACGTCTCGTTGTCCTCGGTTGGTCGGAG
TCTGCCCTATCGGGGTTATCAGACCCTGCACGATGCGGACATCACCGAGC
ATTATCTCCGAGAGTTCGGTCCAGCATGGCTGGAAGACCGTTCCTTCAAG
CTCTGGTTAGGGCCTCCTCAGTATTCCTTGGCTGCCAGGAGTCACTTGCC
AGGAATAGTGCGGGAGGAGAAAGGCTTGTTCCTGCCCTGGGGCCGGGACT
TCCGCGGTGAGCACATCCCCTTCCCCGGGATTTTGTACCGGCAAATTCTC
TCGCAGGGGCAGGTGGTCGGGCCCTCGACGGCAGCGGGAAACGCGGGCCC
AGGGAATGGGAGCGGCTGTGCGTGGACGGGAGAGAGGAAGGAGGGGCATA
GGGGTCCACCTGCCAAATCATTGACGGGCGTGGGCGCAGCTTCGGCGACG
GGATCCGGAGCACCGATCGCAGGGCTGGCTGAAATCATCCCGCCGACATG
CGAGAAGCAAGAAGGAGAAGGCACGGAGCCCTTGCACGTGCTAAGCAACT
ATCTGTGCTGCGGCCCCGCCGCCCCAGAATGGTGCCACGACCCTCGATTT
GTCGCGAGCAAGATGAGAGACTTTTACCCCCTTGTCGAGTACTATCTGAG
GCGGCCACCGCGAGACACTCGGGATGGGCTCGAAGCAGGCGGAAGGGATG
AGAACGGAGAAGCCTTGGAAATTGTGGATGAAGAGGACGAAGTGGAGATG
GAGAGGATAGGCGGGGGCTCCGAGGGCGCTCGGAAGATGACCTTGTACGA
CGGGCAGGAGTTGGGGGTGCTCCCGCCATGCATGACGCGCGGGAAATGTC
CGCACGCAAGCGGAGAAGGGGCCAAGGACTCGTCCCAGTCGGGGGTGGAT
GCGGTGAACTCGCTCTTCAGTATTGTGGGGGAGATGTGGACCGAGATGTC
GCCTTGAGACGGGATGTAAGCGCTTGCGGGTGGGGACGGGCAGGAAAATG
AGCGCGGAGGGATGAAAGGAGTTGAGTGCGACTCTTAAATGTGAATAATG
CATAATCTCGCAGAAGCTAATGCAGTGCCTGCTCCACTTAGGCCGAAAGT
ACAACAACGTAAGGATATCTC back to topprotein sequence of rna4796 >rna4796-protein ID=rna4796-protein|Name=rna4796|organism=Nannochloropsis gaditana|type=polypeptide|length=643bp
MYIRRGEEIKISSSSLPYARYFSFQSYSIPDFVSSASLRDVDIIPSGNGP
NCYTNLTAAMAGAKQGGYEVVVTSHGDHGHANELRALADDRASGYFILFF
RIYQDRVGSLPPMSELADDMGECFGPRGRYPTETPQEWGWACPPSVAVKR
LSRRVGGGKFETLPLCGYRRKHGIVYNDVTPPVIACPSVRAPNLPFNFFL
PSPDYIKQKFANKDAKYLFSCAEAPWVPEKSKGAGGWSFWKGQRSPVEEG
REREENREGATKKETHRKPVARDKPSEDGEVEGEGRKRAPEAGRGSGEGR
ELWARVTGRLPRTANSLYEPPFIANFSDYDVRYVSLSSVGRSLPYRGYQT
LHDADITEHYLREFGPAWLEDRSFKLWLGPPQYSLAARSHLPGIVREEKG
LFLPWGRDFRGEHIPFPGILYRQILSQGQVVGPSTAAGNAGPGNGSGCAW
TGERKEGHRGPPAKSLTGVGAASATGSGAPIAGLAEIIPPTCEKQEGEGT
EPLHVLSNYLCCGPAAPEWCHDPRFVASKMRDFYPLVEYYLRRPPRDTRD
GLEAGGRDENGEALEIVDEEDEVEMERIGGGSEGARKMTLYDGQELGVLP
PCMTRGKCPHASGEGAKDSSQSGVDAVNSLFSIVGEMWTEMSP back to topmRNA from alignment at CM002464.1:380085..383048- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna4796 ID=rna4796|Name=rna4796|organism=Nannochloropsis gaditana|type=mRNA|length=2964bp|location=Sequence derived from alignment at CM002464.1:380085..383048- (Nannochloropsis gaditana)
ACCTGCGGTTTGAAAGAAAGCTAGGATTCAGGGCGTCGGCTGCGAAATTG
GCCTTTTTTGTTTTATTTCGCTTTTATCGTAAAGTTGAAGGGTCCTTACT
GAGGACTCCTCAACCTGTCCATATATCATTTCCCATCGCAACTCGCCGCA
GGCATGCCAAAACCACCAATACCGTCGCAATCAAACCGACGACAATGGGG
GAGCATGGAGTTCACCATGGTGATTCTAGCAGGTCTCGGAGCGACCATTT
TTTGGGGGCATTGGCAGAAAGGTAAAAAGACACAAATGGGCAGATCACGT
GCAGGGATTATGCATACGAAAGACCTTTTTTCTGGGGTGTTTGGCGCACG
AAATTCAGTTGATATCAATGAAATGCAATGCAGAAATTTATCAAGTAGCG
AGGACTCACCGAAAGTGAGGCGTCATCTTGGCATTACTGAGGGCTTGATG
ATGCCAACGCTGCTCGGACATAGATATGACTTATAATTTATACGAAATTG
TATGCTCATACCCGACGACAGGTGCAATCCTCAATCCGCCTTATTGTGCA
TGGAGATTTGTAAGGTAATTATATCTCCTTATGCCCAATATCCGCCTTCG
CGTCAACGCTTGGAATGAAAGCTTTTTTATTGTATCACACGCGAAAGCTA
CTGAGCACCACAGTCTTATATTATGGTTATTACTACTGCATCATTACTGA
GTCTTGGTACCTAAGTCATTTTATTGTCATGATAATTGTGTAATTTGTCT
TTTACATTGCGGACCTACACACAACACCCACCCACACGCATATATACTTT
CACGAAGCAATTTCGCGTCCTGGAACGTCGCCTTTCCGGACTCCACCTCC
ATCTATCACGTCTCTCTGATGTACATCAGACGAGGAGAGGAGATCAAGAT
TTCCTCGTCCTCCCTTCCGTATGCCCGGTATTTCTCCTTTCAATCCTATT
CCATCCCGGATTTTGTCTCCTCGGCTAGCCTCCGGGACGTGGATATCATT
CCCTCCGGGAACGGGCCCAACTGCTACACAAATTTGACGGCGGCCATGGC
GGGGGCGAAGCAAGGAGGGTATGAGGTGGTGGTCACGTCCCACGGGGACC
ATGGCCATGCGAACGAATTGCGGGCCCTGGCGGACGACCGAGCCTCCGGG
TATTTTATTCTATTCTTCCGTATCTACCAGGACCGCGTGGGCAGCCTCCC
GCCCATGTCGGAACTCGCGGATGACATGGGGGAGTGCTTTGGTCCGCGCG
GCCGGTATCCGACAGAGACACCGCAAGAGTGGGGCTGGGCATGCCCGCCC
TCGGTGGCCGTGAAGCGCCTGTCCAGGAGAGTTGGCGGCGGGAAATTTGA
GACCTTGCCCCTTTGTGGGTACCGCCGCAAGCATGGGATCGTCTACAACG
ACGTGACTCCGCCCGTGATTGCATGTCCGTCCGTCCGCGCCCCCAACTTG
CCCTTCAATTTCTTCCTGCCGTCGCCTGATTACATCAAGCAGAAATTCGC
GAACAAGGATGCCAAGTACCTTTTCTCCTGTGCCGAGGCGCCATGGGTGC
CTGAGAAGAGCAAGGGGGCCGGAGGGTGGAGTTTCTGGAAGGGACAAAGA
AGCCCGGTGGAGGAGGGCCGAGAAAGGGAAGAGAATAGGGAAGGAGCGAC
AAAAAAAGAGACCCATAGGAAGCCTGTTGCCAGGGACAAGCCGTCGGAAG
ATGGCGAGGTGGAGGGAGAGGGGCGGAAAAGGGCCCCGGAGGCGGGACGT
GGGAGCGGAGAGGGTCGCGAGCTTTGGGCGCGTGTGACAGGGCGCCTGCC
TCGGACCGCCAACAGTTTGTACGAGCCTCCCTTCATCGCCAATTTCAGCG
ACTATGACGTACGCTACGTCTCGTTGTCCTCGGTTGGTCGGAGTCTGCCC
TATCGGGGTTATCAGACCCTGCACGATGCGGACATCACCGAGCATTATCT
CCGAGAGTTCGGTCCAGCATGGCTGGAAGACCGTTCCTTCAAGCTCTGGT
TAGGGCCTCCTCAGTATTCCTTGGCTGCCAGGAGTCACTTGCCAGGAATA
GTGCGGGAGGAGAAAGGCTTGTTCCTGCCCTGGGGCCGGGACTTCCGCGG
TGAGCACATCCCCTTCCCCGGGATTTTGTACCGGCAAATTCTCTCGCAGG
GGCAGGTGGTCGGGCCCTCGACGGCAGCGGGAAACGCGGGCCCAGGGAAT
GGGAGCGGCTGTGCGTGGACGGGAGAGAGGAAGGAGGGGCATAGGGGTCC
ACCTGCCAAATCATTGACGGGCGTGGGCGCAGCTTCGGCGACGGGATCCG
GAGCACCGATCGCAGGGCTGGCTGAAATCATCCCGCCGACATGCGAGAAG
CAAGAAGGAGAAGGCACGGAGCCCTTGCACGTGCTAAGCAACTATCTGTG
CTGCGGCCCCGCCGCCCCAGAATGGTGCCACGACCCTCGATTTGTCGCGA
GCAAGATGAGAGACTTTTACCCCCTTGTCGAGTACTATCTGAGGCGGCCA
CCGCGAGACACTCGGGATGGGCTCGAAGCAGGCGGAAGGGATGAGAACGG
AGAAGCCTTGGAAATTGTGGATGAAGAGGACGAAGTGGAGATGGAGAGGA
TAGGCGGGGGCTCCGAGGGCGCTCGGAAGATGACCTTGTACGACGGGCAG
GAGTTGGGGGTGCTCCCGCCATGCATGACGCGCGGGAAATGTCCGCACGC
AAGCGGAGAAGGGGCCAAGGACTCGTCCCAGTCGGGGGTGGATGCGGTGA
ACTCGCTCTTCAGTATTGTGGGGGAGATGTGGACCGAGATGTCGCCTTGA
GACGGGATGTAAGCGCTTGCGGGTGGGGACGGGCAGGAAAATGAGCGCGG
AGGGATGAAAGGAGTTGAGTGCGACTCTTAAATGTGAATAATGCATAATC
TCGCAGAAGCTAATGCAGTGCCTGCTCCACTTAGGCCGAAAGTACAACAA
CGTAAGGATATCTC back to topCoding sequence (CDS) from alignment at CM002464.1:380085..383048- >rna4796 ID=rna4796|Name=rna4796|organism=Nannochloropsis gaditana|type=CDS|length=1932bp|location=Sequence derived from alignment at CM002464.1:380085..383048- (Nannochloropsis gaditana)
ATGTACATCAGACGAGGAGAGGAGATCAAGATTTCCTCGTCCTCCCTTCC
GTATGCCCGGTATTTCTCCTTTCAATCCTATTCCATCCCGGATTTTGTCT
CCTCGGCTAGCCTCCGGGACGTGGATATCATTCCCTCCGGGAACGGGCCC
AACTGCTACACAAATTTGACGGCGGCCATGGCGGGGGCGAAGCAAGGAGG
GTATGAGGTGGTGGTCACGTCCCACGGGGACCATGGCCATGCGAACGAAT
TGCGGGCCCTGGCGGACGACCGAGCCTCCGGGTATTTTATTCTATTCTTC
CGTATCTACCAGGACCGCGTGGGCAGCCTCCCGCCCATGTCGGAACTCGC
GGATGACATGGGGGAGTGCTTTGGTCCGCGCGGCCGGTATCCGACAGAGA
CACCGCAAGAGTGGGGCTGGGCATGCCCGCCCTCGGTGGCCGTGAAGCGC
CTGTCCAGGAGAGTTGGCGGCGGGAAATTTGAGACCTTGCCCCTTTGTGG
GTACCGCCGCAAGCATGGGATCGTCTACAACGACGTGACTCCGCCCGTGA
TTGCATGTCCGTCCGTCCGCGCCCCCAACTTGCCCTTCAATTTCTTCCTG
CCGTCGCCTGATTACATCAAGCAGAAATTCGCGAACAAGGATGCCAAGTA
CCTTTTCTCCTGTGCCGAGGCGCCATGGGTGCCTGAGAAGAGCAAGGGGG
CCGGAGGGTGGAGTTTCTGGAAGGGACAAAGAAGCCCGGTGGAGGAGGGC
CGAGAAAGGGAAGAGAATAGGGAAGGAGCGACAAAAAAAGAGACCCATAG
GAAGCCTGTTGCCAGGGACAAGCCGTCGGAAGATGGCGAGGTGGAGGGAG
AGGGGCGGAAAAGGGCCCCGGAGGCGGGACGTGGGAGCGGAGAGGGTCGC
GAGCTTTGGGCGCGTGTGACAGGGCGCCTGCCTCGGACCGCCAACAGTTT
GTACGAGCCTCCCTTCATCGCCAATTTCAGCGACTATGACGTACGCTACG
TCTCGTTGTCCTCGGTTGGTCGGAGTCTGCCCTATCGGGGTTATCAGACC
CTGCACGATGCGGACATCACCGAGCATTATCTCCGAGAGTTCGGTCCAGC
ATGGCTGGAAGACCGTTCCTTCAAGCTCTGGTTAGGGCCTCCTCAGTATT
CCTTGGCTGCCAGGAGTCACTTGCCAGGAATAGTGCGGGAGGAGAAAGGC
TTGTTCCTGCCCTGGGGCCGGGACTTCCGCGGTGAGCACATCCCCTTCCC
CGGGATTTTGTACCGGCAAATTCTCTCGCAGGGGCAGGTGGTCGGGCCCT
CGACGGCAGCGGGAAACGCGGGCCCAGGGAATGGGAGCGGCTGTGCGTGG
ACGGGAGAGAGGAAGGAGGGGCATAGGGGTCCACCTGCCAAATCATTGAC
GGGCGTGGGCGCAGCTTCGGCGACGGGATCCGGAGCACCGATCGCAGGGC
TGGCTGAAATCATCCCGCCGACATGCGAGAAGCAAGAAGGAGAAGGCACG
GAGCCCTTGCACGTGCTAAGCAACTATCTGTGCTGCGGCCCCGCCGCCCC
AGAATGGTGCCACGACCCTCGATTTGTCGCGAGCAAGATGAGAGACTTTT
ACCCCCTTGTCGAGTACTATCTGAGGCGGCCACCGCGAGACACTCGGGAT
GGGCTCGAAGCAGGCGGAAGGGATGAGAACGGAGAAGCCTTGGAAATTGT
GGATGAAGAGGACGAAGTGGAGATGGAGAGGATAGGCGGGGGCTCCGAGG
GCGCTCGGAAGATGACCTTGTACGACGGGCAGGAGTTGGGGGTGCTCCCG
CCATGCATGACGCGCGGGAAATGTCCGCACGCAAGCGGAGAAGGGGCCAA
GGACTCGTCCCAGTCGGGGGTGGATGCGGTGAACTCGCTCTTCAGTATTG
TGGGGGAGATGTGGACCGAGATGTCGCCTTGA back to top
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