EWM25889.1, cds4784 (CDS) Nannochloropsis gaditana

Overview
NameEWM25889.1
Unique Namecds4784
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:380249..382180 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25889.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100054g2.5581.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:380249..382180 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM25889.1 vs. NCBI_GenBank
Match: gi|585107757|gb|EWM25889.1| (hypothetical protein Naga_100054g2 [Nannochloropsis gaditana])

HSP 1 Score: 1316.21 bits (3405), Expect = 0.000e+0
Identity = 643/643 (100.00%), Postives = 643/643 (100.00%), Query Frame = 0
Query:    1 MYIRRGEEIKISSSSLPYARYFSFQSYSIPDFVSSASLRDVDIIPSGNGPNCYTNLTAAMAGAKQGGYEVVVTSHGDHGHANELRALADDRASGYFILFFRIYQDRVGSLPPMSELADDMGECFGPRGRYPTETPQEWGWACPPSVAVKRLSRRVGGGKFETLPLCGYRRKHGIVYNDVTPPVIACPSVRAPNLPFNFFLPSPDYIKQKFANKDAKYLFSCAEAPWVPEKSKGAGGWSFWKGQRSPVEEGREREENREGATKKETHRKPVARDKPSEDGEVEGEGRKRAPEAGRGSGEGRELWARVTGRLPRTANSLYEPPFIANFSDYDVRYVSLSSVGRSLPYRGYQTLHDADITEHYLREFGPAWLEDRSFKLWLGPPQYSLAARSHLPGIVREEKGLFLPWGRDFRGEHIPFPGILYRQILSQGQVVGPSTAAGNAGPGNGSGCAWTGERKEGHRGPPAKSLTGVGAASATGSGAPIAGLAEIIPPTCEKQEGEGTEPLHVLSNYLCCGPAAPEWCHDPRFVASKMRDFYPLVEYYLRRPPRDTRDGLEAGGRDENGEALEIVDEEDEVEMERIGGGSEGARKMTLYDGQELGVLPPCMTRGKCPHASGEGAKDSSQSGVDAVNSLFSIVGEMWTEMSP 643
            MYIRRGEEIKISSSSLPYARYFSFQSYSIPDFVSSASLRDVDIIPSGNGPNCYTNLTAAMAGAKQGGYEVVVTSHGDHGHANELRALADDRASGYFILFFRIYQDRVGSLPPMSELADDMGECFGPRGRYPTETPQEWGWACPPSVAVKRLSRRVGGGKFETLPLCGYRRKHGIVYNDVTPPVIACPSVRAPNLPFNFFLPSPDYIKQKFANKDAKYLFSCAEAPWVPEKSKGAGGWSFWKGQRSPVEEGREREENREGATKKETHRKPVARDKPSEDGEVEGEGRKRAPEAGRGSGEGRELWARVTGRLPRTANSLYEPPFIANFSDYDVRYVSLSSVGRSLPYRGYQTLHDADITEHYLREFGPAWLEDRSFKLWLGPPQYSLAARSHLPGIVREEKGLFLPWGRDFRGEHIPFPGILYRQILSQGQVVGPSTAAGNAGPGNGSGCAWTGERKEGHRGPPAKSLTGVGAASATGSGAPIAGLAEIIPPTCEKQEGEGTEPLHVLSNYLCCGPAAPEWCHDPRFVASKMRDFYPLVEYYLRRPPRDTRDGLEAGGRDENGEALEIVDEEDEVEMERIGGGSEGARKMTLYDGQELGVLPPCMTRGKCPHASGEGAKDSSQSGVDAVNSLFSIVGEMWTEMSP
Sbjct:    1 MYIRRGEEIKISSSSLPYARYFSFQSYSIPDFVSSASLRDVDIIPSGNGPNCYTNLTAAMAGAKQGGYEVVVTSHGDHGHANELRALADDRASGYFILFFRIYQDRVGSLPPMSELADDMGECFGPRGRYPTETPQEWGWACPPSVAVKRLSRRVGGGKFETLPLCGYRRKHGIVYNDVTPPVIACPSVRAPNLPFNFFLPSPDYIKQKFANKDAKYLFSCAEAPWVPEKSKGAGGWSFWKGQRSPVEEGREREENREGATKKETHRKPVARDKPSEDGEVEGEGRKRAPEAGRGSGEGRELWARVTGRLPRTANSLYEPPFIANFSDYDVRYVSLSSVGRSLPYRGYQTLHDADITEHYLREFGPAWLEDRSFKLWLGPPQYSLAARSHLPGIVREEKGLFLPWGRDFRGEHIPFPGILYRQILSQGQVVGPSTAAGNAGPGNGSGCAWTGERKEGHRGPPAKSLTGVGAASATGSGAPIAGLAEIIPPTCEKQEGEGTEPLHVLSNYLCCGPAAPEWCHDPRFVASKMRDFYPLVEYYLRRPPRDTRDGLEAGGRDENGEALEIVDEEDEVEMERIGGGSEGARKMTLYDGQELGVLPPCMTRGKCPHASGEGAKDSSQSGVDAVNSLFSIVGEMWTEMSP 643          
BLAST of EWM25889.1 vs. NCBI_GenBank
Match: gi|585107756|gb|EWM25888.1| (hypothetical protein Naga_100054g2 [Nannochloropsis gaditana])

HSP 1 Score: 1314.67 bits (3401), Expect = 0.000e+0
Identity = 643/643 (100.00%), Postives = 643/643 (100.00%), Query Frame = 0
Query:    1 MYIRRGEEIKISSSSLPYARYFSFQSYSIPDFVSSASLRDVDIIPSGNGPNCYTNLTAAMAGAKQGGYEVVVTSHGDHGHANELRALADDRASGYFILFFRIYQDRVGSLPPMSELADDMGECFGPRGRYPTETPQEWGWACPPSVAVKRLSRRVGGGKFETLPLCGYRRKHGIVYNDVTPPVIACPSVRAPNLPFNFFLPSPDYIKQKFANKDAKYLFSCAEAPWVPEKSKGAGGWSFWKGQRSPVEEGREREENREGATKKETHRKPVARDKPSEDGEVEGEGRKRAPEAGRGSGEGRELWARVTGRLPRTANSLYEPPFIANFSDYDVRYVSLSSVGRSLPYRGYQTLHDADITEHYLREFGPAWLEDRSFKLWLGPPQYSLAARSHLPGIVREEKGLFLPWGRDFRGEHIPFPGILYRQILSQGQVVGPSTAAGNAGPGNGSGCAWTGERKEGHRGPPAKSLTGVGAASATGSGAPIAGLAEIIPPTCEKQEGEGTEPLHVLSNYLCCGPAAPEWCHDPRFVASKMRDFYPLVEYYLRRPPRDTRDGLEAGGRDENGEALEIVDEEDEVEMERIGGGSEGARKMTLYDGQELGVLPPCMTRGKCPHASGEGAKDSSQSGVDAVNSLFSIVGEMWTEMSP 643
            MYIRRGEEIKISSSSLPYARYFSFQSYSIPDFVSSASLRDVDIIPSGNGPNCYTNLTAAMAGAKQGGYEVVVTSHGDHGHANELRALADDRASGYFILFFRIYQDRVGSLPPMSELADDMGECFGPRGRYPTETPQEWGWACPPSVAVKRLSRRVGGGKFETLPLCGYRRKHGIVYNDVTPPVIACPSVRAPNLPFNFFLPSPDYIKQKFANKDAKYLFSCAEAPWVPEKSKGAGGWSFWKGQRSPVEEGREREENREGATKKETHRKPVARDKPSEDGEVEGEGRKRAPEAGRGSGEGRELWARVTGRLPRTANSLYEPPFIANFSDYDVRYVSLSSVGRSLPYRGYQTLHDADITEHYLREFGPAWLEDRSFKLWLGPPQYSLAARSHLPGIVREEKGLFLPWGRDFRGEHIPFPGILYRQILSQGQVVGPSTAAGNAGPGNGSGCAWTGERKEGHRGPPAKSLTGVGAASATGSGAPIAGLAEIIPPTCEKQEGEGTEPLHVLSNYLCCGPAAPEWCHDPRFVASKMRDFYPLVEYYLRRPPRDTRDGLEAGGRDENGEALEIVDEEDEVEMERIGGGSEGARKMTLYDGQELGVLPPCMTRGKCPHASGEGAKDSSQSGVDAVNSLFSIVGEMWTEMSP
Sbjct:   75 MYIRRGEEIKISSSSLPYARYFSFQSYSIPDFVSSASLRDVDIIPSGNGPNCYTNLTAAMAGAKQGGYEVVVTSHGDHGHANELRALADDRASGYFILFFRIYQDRVGSLPPMSELADDMGECFGPRGRYPTETPQEWGWACPPSVAVKRLSRRVGGGKFETLPLCGYRRKHGIVYNDVTPPVIACPSVRAPNLPFNFFLPSPDYIKQKFANKDAKYLFSCAEAPWVPEKSKGAGGWSFWKGQRSPVEEGREREENREGATKKETHRKPVARDKPSEDGEVEGEGRKRAPEAGRGSGEGRELWARVTGRLPRTANSLYEPPFIANFSDYDVRYVSLSSVGRSLPYRGYQTLHDADITEHYLREFGPAWLEDRSFKLWLGPPQYSLAARSHLPGIVREEKGLFLPWGRDFRGEHIPFPGILYRQILSQGQVVGPSTAAGNAGPGNGSGCAWTGERKEGHRGPPAKSLTGVGAASATGSGAPIAGLAEIIPPTCEKQEGEGTEPLHVLSNYLCCGPAAPEWCHDPRFVASKMRDFYPLVEYYLRRPPRDTRDGLEAGGRDENGEALEIVDEEDEVEMERIGGGSEGARKMTLYDGQELGVLPPCMTRGKCPHASGEGAKDSSQSGVDAVNSLFSIVGEMWTEMSP 717          
BLAST of EWM25889.1 vs. NCBI_GenBank
Match: gi|585109295|gb|EWM27118.1| (hypothetical protein Naga_100046g25 [Nannochloropsis gaditana])

HSP 1 Score: 169.474 bits (428), Expect = 2.302e-41
Identity = 97/229 (42.36%), Postives = 129/229 (56.33%), Query Frame = 0
Query:    3 IRRGEEIKISSSSLPYARYFSFQSYSIPDFVSSASLRDVDIIPSGNGPNCYTNLTAAMAGAKQGGYEVVVTSHGDHGHANELRALADDRASGYFILFFRIYQDRVGSLPPMSELADDMGECFGPRGRYPTETPQEWGWACPPSVAVKRLSRRVGGGKFETLPLCGYRRKHGI--------VYNDVTPPVIACPSVRAPNLPFNFFLPSPDYIKQKFANKDAKYLFSCAE 223
            + +G+E K+ + S PYARY S+Q+Y +   +S  SLRDVDI+P  NGPNCY NLTAA  G +QGGY + +T+ GD  + NELRAL D   SG F LFFRIY +     PP +         +G    Y  +   EWGWA PP +  KR    +  G++  +P C YRR+ G         ++   +PP    P+V APN   N FLP     + KFA+KDA Y+ S AE
Sbjct:  167 MSKGDEFKLVAESFPYARYCSYQTYDLRTLMSHQSLRDVDIVPDANGPNCYANLTAAQEGLRQGGYTLYMTARGDQNYTNELRALPDSIESGQFDLFFRIYVEEALQGPPQAP--------WGHLPPYGKDLAFEWGWAPPPRLYAKRA--HLKDGEWREVPFCQYRRRKGFKLLAYLSEIWPAPSPPFAGHPAV-APNKANNVFLPKYTDRQGKFASKDANYVASVAE 384          

HSP 2 Score: 142.124 bits (357), Expect = 5.651e-32
Identity = 90/246 (36.59%), Postives = 125/246 (50.81%), Query Frame = 0
Query:  296 SGEGRELWARVTGRLPRTANSLYEPPFIANFSDYDVRYVSLSSVGRSLPYRGYQTLHDADITEHYLREFGPAWLEDRSFKLWLGPPQYSLAARSHLPGIVREEKGLFLPWGRD-FRGEHIPFPGILYRQILSQGQVVGPSTAAGNAGPGNGSGCAWTGERKEGHRGPPAKSLTGVGAASATGSGAPIAGLAEIIPPTCEKQEGEGTEPLHVLSNYLCCGPAAPEWCHDPRFVASKMRDFYPLVEYY 540
            +G    LWARVTG LPR   SLY PP++AN +DYDVRYVSLS+V R++P+R + T+ D  ITEHY +   P    DR F +W+ PPQ      S  P  V +E  + + WG   F G  + + G+LYRQ++++ QVVG    A +A   +G         + G  GP      G GA +A  +G P+           E ++              CC   AP  C  P +V  +M  +YP VEY+
Sbjct:  390 NGSEAMLWARVTGTLPRVPGSLYTPPYVANATDYDVRYVSLSAVHRTIPFRNHATVADTQITEHYQKRLPPGVEWDRKFTIWVVPPQ----VESAYPRQVMDENPVIMKWGASLFGGGIVEYTGLLYRQVMARSQVVGLEQGALSA---SGVVNIVPEACQSGQVGP-----HGEGADAAMKAGDPL-----------EMEQ-------------FCCSTEAPMECFLPEYVRYRMGPYYPQVEYF 599          
BLAST of EWM25889.1 vs. NCBI_GenBank
Match: gi|585105664|gb|EWM24273.1| (protein of unknown function DUF1214 [Nannochloropsis gaditana])

HSP 1 Score: 132.494 bits (332), Expect = 3.395e-29
Identity = 91/241 (37.76%), Postives = 124/241 (51.45%), Query Frame = 0
Query:    1 MYIRRGEEIKISSSSLPYARYFSFQSYSIPDFVSSASLRDVDIIPSGNGPNCYTNLTAAMAGAKQGGYEVVVTSHGDHGHANELRALADDRASGYFILFFRIYQDRVGSLP-PMSELADDMGECFGPRGRYPTETPQEWGWACPPSVAVKRLSRRVGGGKFETLPLCGYRR--------KHGIV-----YNDVTPPVIACPSVRAPNLPFNFFLPSPDYIKQKFANKDAKYLFSCAEAPWV 227
            M++  GEE  + S SLPY+R+FSFQ+YS+    S   LRD +I+ S NGPN Y N++AA  G KQGGY + +T  G  G+ NEL+ L   + SG+F+L FRIY   VG  P PM+  A           R     PQ WGW  PP V+V+R  R+   G +  +P C  R+        K  I+       D+ PP  +      P    NF LP  D++   F++ D + L S A  P V
Sbjct:   89 MFLNEGEEYTVESESLPYSRFFSFQTYSLDGKTSYGILRDAEIV-SQNGPNLYANMSAAAGGEKQGGYTLYLTPDGSKGYPNELQTLKYGQKSGFFVLIFRIYD--VGDFPHPMAPWAH--------LSRGDARQPQRWGWTPPPRVSVRRTMRQ---GSWREIPSCVTRQGPGGKLWSKTYILGLTNRLEDIFPPSHSYTGFIKPLRQNNFHLPH-DHL---FSSVDTRTLVSAAAIPAV 311          

HSP 2 Score: 95.1301 bits (235), Expect = 6.103e-17
Identity = 55/126 (43.65%), Postives = 70/126 (55.56%), Query Frame = 0
Query:  301 ELWARVTGRLPRTANSLYEPPFIANFSDYDVRYVSLSSVGRSLPYRGYQTLHDADITEHY-LREFGPAWLEDRSFKLWLGPPQYSLAARSHLPGIVREEKGLFLPWGRDFRGEHIPFPGILYRQIL 425
            ++WARV  +LPRT +SLY PPFIAN SDYDVRY+S +S  R+ P   ++TL D  I +HY  R  GP    D  F LW+GP        +  P   R E  L + WG   R      P +LY Q+L
Sbjct:  315 DVWARVEAKLPRTPSSLYSPPFIANQSDYDVRYISFTSASRAFPLWTFETLTDKSIRQHYESRLRGPHEQWDGRFSLWIGP------VNAPPPEQARLENALIMRWGEVAR------PALLYNQLL 428          
BLAST of EWM25889.1 vs. NCBI_GenBank
Match: gi|585101524|gb|EWM21339.1| (hypothetical protein Naga_100075g21 [Nannochloropsis gaditana])

HSP 1 Score: 89.3521 bits (220), Expect = 4.881e-15
Identity = 107/427 (25.06%), Postives = 169/427 (39.58%), Query Frame = 0
Query:    5 RGEEIKISSSSLPYARYFSFQSYSIPDFVSSASLRDVDIIPSGNGPNCYTNLTAAMAGAKQGGYEVVVTSHGDHGHANELRALADDRASGYFILFFRIYQDRVGSLPPMSELADDMGECFGPR-GRYPTETPQEWGWACPPSVAVKRLSRRVGGGKFETLPLCGYRRKHGIVYNDVTPPVIACPSVRAPNLPFNFFLPSPDYIKQKFANKDAKYLFSCAEAPWVPEKSKGAGGWSFWKGQRSPVEEGREREENREGATKKETHRKPVARDKPSEDGEVEGEGRKRAPEAGRGSGEGRELWARVTGRLPRTANSLYEPPFIANFSDYDVRYVSLSSVGRSLPYRGYQTLHDADITEHYLRE-FGPAWLEDRSFKLWLGPPQYSLAARSHLPGIVREEKGLFLPWGRDFRGEHIP-FPGILYRQILSQG 428
            + EE+       PY RYFSF  Y      S ++L D DI PS  G N + ++   +     G YE+ V+  G  G+ NE+ AL  D  S Y +L FR+                   +   PR G   +   +EWG+   P V +  L+ R   G+++ +  C         +   T  VI        +L FN + P           K+ +    C            A  +S +  +++P+         R G   +  +   +    P E G+                   ++   R+TG+LPRT   L++   +A+ + YD RYVS +S      Y  Y+T+HD DI  HY  + FG  W  DR + L +     +LA +    G+    + + L   R     H+P  P I+ R +L  G
Sbjct:  154 KEEEVYRIRGKFPYVRYFSFTVYD-ASLQSISTLHDTDIRPSS-GKNPFNDI--EVTEDNMGTYEIYVSKDGSKGYPNEMAALRPDSTSPYALLAFRL-------------------QLLDPRAGEDRSGKNREWGYVDMPLVEI--LNHR--NGEWDIIRRCSDE------FQARTEEVI-----ENLDLTFNTWWP-----------KNLQIGTEC-----------NATEFSLFDPEQNPII--------RRGVAVRNANENYIFWCMPKEIGK-------------------KDYIIRITGKLPRTPYGLFDDIRVADTARYDSRYVSFTSADAIPLYPSYETIHDRDIFNHYSTDPFGSDW--DRMYNL-VATSDVNLAKKC---GLYNRAEDVLLQLTRSPTFTHLPHVPAIVMRHLLPGG 487          
BLAST of EWM25889.1 vs. NCBI_GenBank
Match: gi|585102674|gb|EWM22223.1| (hypothetical protein Naga_100312g6 [Nannochloropsis gaditana])

HSP 1 Score: 71.633 bits (174), Expect = 1.837e-9
Identity = 55/190 (28.95%), Postives = 86/190 (45.26%), Query Frame = 0
Query:  295 GSGEGRELWARVTGRLPRTANSLYEPPFIANFSDYDVRYVSLSSVGRSLPYRGYQTLHDADITEHYLREFGPAWLEDRSFKLWLGPPQYSLAARSHLPGIVR----EEKGLFL-PWGRDFRGEHIPFPGILYRQILSQGQVVGPSTAAGNAGPGNGSGCAWTGERKEGHRGPPAKSLTGVGAASATGSGA 479
            G G    L A +TG LP +   L+ PPF+A+F+  + RY+SLS+   ++P    QTL D+DI + Y + +G  +L +          QY + A + L    R        +FL  WG+  R   + +P ++ R+ILSQ   +G +     +       C               +S+ GVGA   T S A
Sbjct:  258 GGGVQGNLVAVITGTLPPSPGGLWTPPFVADFTKSNARYLSLSTYDLNIPGPVLQTLFDSDIVDFYSQYYGSEYLWNLR-----NSRQYKIVAAADLASAKRCGHLTRDAMFLSTWGQTAR---VSYPALVLREILSQSSRIGDTANNTQSIHNIKQAC---------------ESIAGVGAKCETSSFA 424          
BLAST of EWM25889.1 vs. NCBI_GenBank
Match: gi|553186469|ref|XP_005854425.1| (hypothetical protein NGA_0235800 [Nannochloropsis gaditana CCMP526] >gi|422294638|gb|EKU21938.1| hypothetical protein NGA_0235800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 70.8626 bits (172), Expect = 4.156e-9
Identity = 56/191 (29.32%), Postives = 89/191 (46.60%), Query Frame = 0
Query:  295 GSGEGRELWARVTGRLPRTANSLYEPPFIANFSDYDVRYVSLSSVGRSLPYRGYQTLHDADITEHYLREFGPAWLED-RSFKLWLGPPQYSLAARSHLPGIVR----EEKGLFL-PWGRDFRGEHIPFPGILYRQILSQGQVVGPSTAAGNAGPGNGSGCAWTGERKEGHRGPPAKSLTGVGAASATGSGA 479
            G G    L A +TG LP +   L+ PPF+A+F+  + RY+SLS+   ++P    QTL D+DI + Y + +G  +L + R+ +      QY + A + L    R        +FL  WG+  R   + +P ++ R+ILSQ   +G +     +       C               +S+ GVGA   T S A
Sbjct:  360 GGGVQGNLVAVITGTLPPSPGGLWTPPFVADFTKSNARYLSLSTYDLNIPGPVLQTLFDSDIVDFYSQYYGSEYLWNLRNSR------QYKIVAAADLASAKRCGHLTRDAMFLSTWGQTAR---VSYPALVLREILSQSSRIGDTANNTQSIHNIKQAC---------------ESIAGVGAKCETSSFA 526          
The following BLAST results are available for this feature:
BLAST of EWM25889.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585107757|gb|EWM25889.1|0.000e+0100.00hypothetical protein Naga_100054g2 [Nannochloropsi... [more]
gi|585107756|gb|EWM25888.1|0.000e+0100.00hypothetical protein Naga_100054g2 [Nannochloropsi... [more]
gi|585109295|gb|EWM27118.1|2.302e-4142.36hypothetical protein Naga_100046g25 [Nannochlorops... [more]
gi|585105664|gb|EWM24273.1|3.395e-2937.76protein of unknown function DUF1214 [Nannochlorops... [more]
gi|585101524|gb|EWM21339.1|4.881e-1525.06hypothetical protein Naga_100075g21 [Nannochlorops... [more]
gi|585102674|gb|EWM22223.1|1.837e-928.95hypothetical protein Naga_100312g6 [Nannochloropsi... [more]
gi|553186469|ref|XP_005854425.1|4.156e-929.32hypothetical protein NGA_0235800 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4796rna4796Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications