rna2569, rna2569 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2569
Unique Name	rna2569
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1859
Alignment location	CM002459.1:687280..689940 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100036g14.2532.mrna
Orig protein id	gnl\|cribi\|Naga_100036g14.2532
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:687280..689940 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100036g14	gene2456	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28112.1	cds2561	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2569	rna2569-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:687280..689940-
coding sequence from alignment at CM002459.1:687280..689940-

mRNA sequence

>rna2569 ID=rna2569|Name=rna2569|organism=Nannochloropsis gaditana|type=mRNA|length=1859bp
TGCTGTCGTTGCGTACATATTATAGCGGAATCTGCCAAATTTCGGAGGTG
GATGGACAACATTGCTTTGGGCGTGGGCGTCCGCACAGCCAACCCCCCAC
AGATGCAGCCGAGGGGCTCGCCCACTGGCTCCAAGGGGAAAGGGGAATTT
TCCCTCCCGCACTGATGATATGGAATGTCCGCATGAGTTGATGGATTATG
CCACCCAACTAACAGGGAAACATGTGTAAACGGGTCATGACATCACGAAA
GCGGGAGTTGGACGATGTTTTGTCCCTGTGCCCAACACCCGGCATGGCCT
CCACTTTTCTTCCACCTTCAACTTCGCATGCCTTCGCTGCCGCAGTGATG
GCGCCCGCCCTAATCAAGGCCGTCGCATCCGTCAAAAGCAAACATGTAAC
AACGCCACTATCAGCATTGGGTCAAGATGTGCTGAATGTGGTGGCTCAGT
ATTGTCATCCCATTGAACTTGCCCGCCTCGGCTTGTGCACGCGCGAACTT
CTAGTTGGGAGCGAGCAGAGCGCCGCCCTTTTGTGTCGGCGCTATGTAGC
ACCTGCTGAAGCAGACATGGTCGCATATCAAGCTGGTCACAGTAATCTTG
GCTCATGTTCGGGCAATAGCTGGTGTTACCGTTACCTTTGCGCCTTCGAA
GTTGCGGGCGTTGAGGCGCCAAAGCTTAAGACGGTGCTCCGTGACATTTA
CAGTCAGCGGCATGTAATGCAGGTAAACATCGGCTCCGTGACGGCTAAAA
GAGCGCTGGCAGGTTCTACCGGGGCAGCGAGGGGCGTATTGACCCCCACC
GCAACACAGCACTTAAACCTGTACGGGTTGCGCATGGGGGACGGAGGAGC
GGAAAGGTTGGCGCTGGCGCTCCGGGTTGCACGGGCTTACCGAGTGCTGC
TTTTGAATCTAGGAGGGAATGATCTTAGCGATCGTGGGGCGCAAGCAGTC
ATCCAGGCGATCAAGCGCCATCACGCCGAGGTGGACACTTTGTTCCTTGC
CCAGAACCAGATCGGGCCTGAGGGCGCGCGGTGTGTCGCTGATCTGATCT
CCTCCAGCCCCACGCTCCGGTCTCTCTCCCTCTCTGACAACCCGCTCACG
GATGAGGGCGCCGTTTGCATCACCGGGGCGTTGCCAGAGAGCAGCAGCCT
TGCAACGCTTTCCATGCGATGTGCGAGTTTCTCCTCACAGGCCCGGGAGG
GCCTCCGTTCCTCTTGGGGGGGACGCGGCGGCGACAAAGTTTTTGGTCTC
TACATTTAGACAGAAAGCACGTCAAATTCGAAGGCGATTGCGGTTTTGGA
CTCTATGAATTTAAAGGCCTGTACGCCTGATGGGAACGTAGGGTGAGCGC
ACAAAGTGGACTCGACACCGCGTTGTCGAAAGTACCCAACTAGGCGAACT
GGTTGGACGAGGCAAAAACATGACGTGATCAATGTCGCCACTTTAAAAAA
GCACCAGCATTTATGCGTCCCATTTTTCAAATTTATTTCTTGCGAAAGGA
AGTGAGTGAGACCGGACGGGAAACGTAAACTGTACACAGTGACGCCGATC
GTGGATATGCTGTGGAGTCTCGGCTTCATGGGGTTTTGGCATGCATAAAT
ACATTTTTGGGTATGAAAGATGGCTTTGGCCAGGGCAATTAGCATGTATA
TGGCCGTATATAGCATTCTTAAGGTAGGACCCCTAGTAGCTTCTCATTGG
TTGGACGTGCCTCCTGCTCCACGCCTCTGACCTTTTTAGCAAGTGTTGCA
CGAAAATTCCACGACCATGAGGCAACCGGTCCTTAATGGATTTTCTGCAC
CTACAAAGTAAGTGCCGTATCGGCAGGAAAAAGAAATTCGTATTAAATAC
TGAGTCTAT

protein sequence of rna2569

>rna2569-protein ID=rna2569-protein|Name=rna2569|organism=Nannochloropsis gaditana|type=polypeptide|length=646bp
MSDTLPLRVRGPAGGSPVLLSNLTRASSISDLMKAVRNLLMLHESKSYIL
MSGFPPKTLFGDNHDRPLGVLLQPNEVVTVKEDGGEEPRVLQGHGLMKQK
RGVKAKGASGPAKKENSRRTDKNTVSKAALVVNAGPRIRTLHRQSGNGTG
GPGTGGENATRKRRRMNVGVSNEEDLGELLLASVGKGGGGGRVGRCMRAV
FRKAVEKNFDEAKAAARVAAVQGGRYSAKASIEERRLDGSCARLHVLYHK
GHGFQSDYRDDVELLSQSQLLGVVRSVLADVDGREMLKPANMAGCSPRVF
WSLMHHFNANSIEGGGQEGLDKGTEAALRWLVPEQDWAFLHERHRKLSDK
AKENQAQEEELQREREEEARRKRMWREARGAGRQRVVAADAHSKGKGRKD
PASGRTTSVGDTIDQAGTPCEEAVSEVLDRERRAQAAVARSHSFHGAPAQ
IVEAARKAEGREGGRKEMEERASLVAVDGESGEIDSDFPEEVSDAWVRVL
RSPSFMLLDCAALAGADAEELVLRLQKHHAAGAKPLAPSDPSLSEVQGWV
SACQNDELDEMMMRLAGGDEDLLEAMECVHVATPKDVRLWGMVPGAFLDM
LARELSEEKMAHVQAKLPDVEAVQVLKERAEKLMAENAWLESWGSE

mRNA from alignment at CM002459.1:687280..689940-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2569 ID=rna2569|Name=rna2569|organism=Nannochloropsis gaditana|type=mRNA|length=2661bp|location=Sequence derived from alignment at CM002459.1:687280..689940- (Nannochloropsis gaditana)
ATTGACACCGTTTCGGATCATTTCGTCTCTTGCCAAACGCTACGCGCCGC
ATGGTATGCCACAGGTGCTTTCACAATGTCGGACACGCTGCCCTTACGTG
TTCGTGGACCAGCTGGTGGGTCCCCCGTCCTTCTTTCCAACCTGACTCGC
GCGTCCTCCATCTCCGACCTCATGAAAGCCGTTCGCAATTTACTTATGCT
TCATGAGTCAAAATCCTACATTCTGATGTCTGGCTTTCCTCCCAAAACAC
TGTTTGGTGACAATCATGACCGGCCATTGGGTGTTTTGCTGCAACCAAAC
GAGGTAGTCACAGTTAAAGAGGATGGAGGCGAGGAGCCTCGAGTGCTGCA
AGGTCATGGTCTGATGAAACAAAAGAGAGGGGTAAAGGCAAAGGGCGCAA
GTGGTCCGGCGAAGAAAGAAAATTCTCGACGTACAGATAAAAATACAGTG
AGCAAGGCTGCTCTTGTTGTGAACGCGGGACCGAGGATTCGCACACTGCA
CCGTCAGAGTGGAAATGGAACGGGCGGTCCTGGAACTGGCGGTGAAAACG
CAACTCGCAAACGTCGACGCATGAACGTGGGCGTATCAAACGAGGAAGAT
TTGGGGGAGTTGTTGCTTGCTTCTGTTGGGAAAGGGGGTGGGGGCGGAAG
GGTTGGACGATGTATGCGCGCAGTGTTTCGGAAAGCTGTTGAGAAGAACT
TCGATGAGGCGAAGGCCGCGGCTCGCGTGGCAGCCGTTCAAGGAGGGCGG
TACTCAGCAAAAGCAAGCATAGAAGAGCGGCGGTTGGATGGGTCGTGCGC
ACGCCTGCACGTACTCTACCACAAAGGCCACGGCTTTCAAAGCGACTATC
GAGATGACGTTGAGCTCCTTTCTCAATCGCAGCTTCTGGGGGTGGTTCGC
TCGGTCCTGGCCGACGTGGACGGACGAGAGATGCTGAAGCCGGCCAACAT
GGCTGGTTGCAGTCCTCGGGTCTTCTGGTCCCTCATGCATCACTTTAACG
CCAACAGCATCGAGGGAGGAGGCCAGGAGGGGCTCGATAAGGGGACGGAG
GCCGCATTGCGATGGCTGGTTCCAGAGCAAGATTGGGCCTTTTTACACGA
GAGACACCGAAAATTGAGCGACAAAGCGAAAGAAAATCAGGCGCAGGAAG
AGGAGCTCCAACGGGAGCGAGAGGAAGAGGCGCGTAGGAAGAGGATGTGG
CGGGAGGCTCGGGGGGCGGGGAGGCAGCGAGTGGTTGCTGCGGACGCACA
CTCGAAGGGAAAAGGCCGAAAAGACCCGGCGTCAGGGAGGACTACAAGCG
TGGGGGATACGATTGATCAAGCTGGAACGCCTTGTGAGGAGGCAGTTTCT
GAAGTCCTGGATCGTGAGAGGCGGGCACAAGCGGCCGTGGCTCGTTCGCA
CTCATTTCACGGAGCCCCCGCACAAATAGTGGAGGCGGCCAGAAAGGCCG
AGGGGAGGGAGGGAGGACGTAAAGAGATGGAGGAAAGAGCGTCGTTGGTA
GCTGTGGATGGGGAGAGCGGGGAGATTGACAGCGACTTCCCGGAGGAGGT
CTCGGACGCGTGGGTGAGGGTCCTGAGGAGCCCTTCCTTCATGCTCTTGG
ACTGCGCGGCCTTGGCGGGAGCGGATGCGGAGGAGCTCGTCTTGCGCCTA
CAGAAGCACCATGCCGCGGGTGCAAAACCCCTGGCACCGTCTGACCCCAG
TCTGTCTGAAGTTCAGGGATGGGTCTCGGCGTGCCAGAACGACGAGCTGG
ACGAGATGATGATGCGACTGGCGGGCGGGGACGAGGACCTGCTGGAGGCT
ATGGAATGCGTGCATGTGGCGACTCCCAAGGATGTGAGGCTCTGGGGAAT
GGTGCCTGGGGCTTTCTTGGATATGCTGGCTCGAGAGCTCTCCGAAGAGA
AAATGGCGCATGTGCAGGCAAAACTTCCGGACGTGGAGGCTGTGCAAGTT
TTGAAAGAGAGGGCTGAAAAGCTTATGGCGGAGAATGCCTGGTTGGAGTC
CTGGGGCAGCGAGTGAGCAGTAAGGAAATTTGAAGGAAAGAGACCTGGAA
GGGGTTGGGAGGGTTGCGTGTGGTTAAGTGGGTATTTTCGGGGCCGATAG
CTGGTCACGGGGTTCAGAATGCTTTGAAGGATAAAGCAACTTGCTGTGTG
CATAGAAATAGACCCTACTGAGAATCAAATTAAAGAGACCGTAAAAATCT
TGCGATAGACTCAGTATTTAATACGAATTTCTTTTTCCTGCCGATACGGC
ACTTACTTTGTAGGTGCAGAAAATCCATTAAGGACCGGTTGCCTCATGGT
CGTGGAATTTTCGTGCAACACTTGCTAAAAAGGTCAGAGGCGTGGAGCAG
GAGGCACGTCCAACCAATGAGAAGCTACTAGGGGTCCTACCTTAAGAATG
CTATATACGGCCATATACATGCTAATTGCCCTGGCCAAAGCCATCTTTCA
TACCCAAAAATGTATTTATGCATGCCAAAACCCCATGAAGCCGAGACTCC
ACAGCATATCCACGATCGGCGTCACTGTGTACAGTTTACGTTTCCCGTCC
GGTCTCACTCACTTCCTTTCGCAAGAAATAAATTTGAAAAATGGGACGCA
TAAATGCTGGTGCTTTTTTAAAGTGGCGACATTGATCACGTCATGTTTTT
GCCTCGTCCAA

Coding sequence (CDS) from alignment at CM002459.1:687280..689940-

>rna2569 ID=rna2569|Name=rna2569|organism=Nannochloropsis gaditana|type=CDS|length=1941bp|location=Sequence derived from alignment at CM002459.1:687280..689940- (Nannochloropsis gaditana)
ATGTCGGACACGCTGCCCTTACGTGTTCGTGGACCAGCTGGTGGGTCCCC
CGTCCTTCTTTCCAACCTGACTCGCGCGTCCTCCATCTCCGACCTCATGA
AAGCCGTTCGCAATTTACTTATGCTTCATGAGTCAAAATCCTACATTCTG
ATGTCTGGCTTTCCTCCCAAAACACTGTTTGGTGACAATCATGACCGGCC
ATTGGGTGTTTTGCTGCAACCAAACGAGGTAGTCACAGTTAAAGAGGATG
GAGGCGAGGAGCCTCGAGTGCTGCAAGGTCATGGTCTGATGAAACAAAAG
AGAGGGGTAAAGGCAAAGGGCGCAAGTGGTCCGGCGAAGAAAGAAAATTC
TCGACGTACAGATAAAAATACAGTGAGCAAGGCTGCTCTTGTTGTGAACG
CGGGACCGAGGATTCGCACACTGCACCGTCAGAGTGGAAATGGAACGGGC
GGTCCTGGAACTGGCGGTGAAAACGCAACTCGCAAACGTCGACGCATGAA
CGTGGGCGTATCAAACGAGGAAGATTTGGGGGAGTTGTTGCTTGCTTCTG
TTGGGAAAGGGGGTGGGGGCGGAAGGGTTGGACGATGTATGCGCGCAGTG
TTTCGGAAAGCTGTTGAGAAGAACTTCGATGAGGCGAAGGCCGCGGCTCG
CGTGGCAGCCGTTCAAGGAGGGCGGTACTCAGCAAAAGCAAGCATAGAAG
AGCGGCGGTTGGATGGGTCGTGCGCACGCCTGCACGTACTCTACCACAAA
GGCCACGGCTTTCAAAGCGACTATCGAGATGACGTTGAGCTCCTTTCTCA
ATCGCAGCTTCTGGGGGTGGTTCGCTCGGTCCTGGCCGACGTGGACGGAC
GAGAGATGCTGAAGCCGGCCAACATGGCTGGTTGCAGTCCTCGGGTCTTC
TGGTCCCTCATGCATCACTTTAACGCCAACAGCATCGAGGGAGGAGGCCA
GGAGGGGCTCGATAAGGGGACGGAGGCCGCATTGCGATGGCTGGTTCCAG
AGCAAGATTGGGCCTTTTTACACGAGAGACACCGAAAATTGAGCGACAAA
GCGAAAGAAAATCAGGCGCAGGAAGAGGAGCTCCAACGGGAGCGAGAGGA
AGAGGCGCGTAGGAAGAGGATGTGGCGGGAGGCTCGGGGGGCGGGGAGGC
AGCGAGTGGTTGCTGCGGACGCACACTCGAAGGGAAAAGGCCGAAAAGAC
CCGGCGTCAGGGAGGACTACAAGCGTGGGGGATACGATTGATCAAGCTGG
AACGCCTTGTGAGGAGGCAGTTTCTGAAGTCCTGGATCGTGAGAGGCGGG
CACAAGCGGCCGTGGCTCGTTCGCACTCATTTCACGGAGCCCCCGCACAA
ATAGTGGAGGCGGCCAGAAAGGCCGAGGGGAGGGAGGGAGGACGTAAAGA
GATGGAGGAAAGAGCGTCGTTGGTAGCTGTGGATGGGGAGAGCGGGGAGA
TTGACAGCGACTTCCCGGAGGAGGTCTCGGACGCGTGGGTGAGGGTCCTG
AGGAGCCCTTCCTTCATGCTCTTGGACTGCGCGGCCTTGGCGGGAGCGGA
TGCGGAGGAGCTCGTCTTGCGCCTACAGAAGCACCATGCCGCGGGTGCAA
AACCCCTGGCACCGTCTGACCCCAGTCTGTCTGAAGTTCAGGGATGGGTC
TCGGCGTGCCAGAACGACGAGCTGGACGAGATGATGATGCGACTGGCGGG
CGGGGACGAGGACCTGCTGGAGGCTATGGAATGCGTGCATGTGGCGACTC
CCAAGGATGTGAGGCTCTGGGGAATGGTGCCTGGGGCTTTCTTGGATATG
CTGGCTCGAGAGCTCTCCGAAGAGAAAATGGCGCATGTGCAGGCAAAACT
TCCGGACGTGGAGGCTGTGCAAGTTTTGAAAGAGAGGGCTGAAAAGCTTA
TGGCGGAGAATGCCTGGTTGGAGTCCTGGGGCAGCGAGTGA

Synonyms

Publications