rna2120, rna2120 (mRNA) Nannochloropsis gaditana

Overview
Namerna2120
Unique Namerna2120
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1643
Alignment locationCM002458.1:929665..931130 +

Link to JBrowse

Properties
Property NameValue
Productg patch domain containing protein
Orig transcript idgnl|cribi|Naga_100009g40.632.mrna
Orig protein idgnl|cribi|Naga_100009g40.632
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:929665..931130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100009g40gene2025Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2120rna2120-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28589.1cds2112Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2120 ID=rna2120|Name=rna2120|organism=Nannochloropsis gaditana|type=mRNA|length=1643bp
AAATTAAGTAATTGTGACGGATAGGCTTTATCACAGGAATGGTGTGTTAC
GTTTATAGGAATGCCTTAAACACTGCTCGGGATATGTTCCCTCGAGTCTG
CACGCAGGGACTTCGTCGATGCAAAGCATGCCTTACTCCTTGTGTCTCAC
TTATTTTATCCTTCGATCCCTTCCGAAGAAATGGCACAGAAGACACTATT
TTATGCAACAGGCATCCTTTTTTGGGCTACCAGCAGTACGGCTGCTTTAA
ATTCCATGGCTGCTGCAGGAGGTGCCGTACCCGCCCAGACATTGGCCCTG
CTTGGTCAGTTGACCCTTGCTTCTGTGGCGCTCTCAGCCACGACTGAAGA
CGTGCATGCACAAATGGCACCTGCTTCGCAGGATGATTGCAACTCGTTCA
TGACATTGTTGTTGGGACCTCTGACCACAGAATGTGCAGAGCTGGCTCGA
GATCTTCAAACAGTAGCCACGACCAGCACGGACTGCAAGCGCGTTTACGA
TTTTTCAAAGCCCAAATTGGACGGTATGTGCTCTAACAAATGTTATCCAA
CTATGGTGCGTGCTTTGGACGGTATGGCAAAAGCTGGCTGTTCTGCTGAC
GGTGTCACGAAGATGATGTGCGACCAATGCGAGGAGGGCACGGCCTGTGT
CGAGGGCGTGTGCCGGCCACTGTGTTCGGCCACGAAGCCGTGCGCTTGCA
ACGATGAGTGTGTGAATGGATCATGCCAGTCGTCGGACCAAGGTGGCTTG
CAGCGTACGGATATGGGCACATTTGGGTACAAAATATCGCTGGAGCACTT
GTGCCTGAAGGCCCCACTGGCGCTTCCAGACACGGACGCCCCAGATGCCA
GCACGGCTGCAAAGGAGCAGCAGATGGCGTTGGCCAAGGAGGACTACTGC
TTTTCAAGCGTGTTCAATGCCTTGGAAGGGTTGACACCCGATGTCTGCGA
TAAGCTGGCCGCCACGGGATGTTGCGCCGGGACAGTAATGCAATACGGAG
TGACATGTGGGCTGGCGAACGATACGGTGAAACTCAACGGGGGGGCACCC
ATGCAACTGACTGCTTTGGCCAATTTCTGCCCCGATGTGGACTTTAAAAC
CAAATGCAGCAATGCTCCTGCGTACGCGGACGGCATGTGTAAGGTCGGGT
ACGTGGACGGCCCGGGGACCGAACTGCCCTTCCCAAGCCTGGCAAGCTTC
GCCCGTGGAAGTTTTGACATGGCGGGGCTTTATGCCCTGGCTGGGGGTAT
CTCTTTCATGTGCCTCCTTTTGTTGACGGTGTCGATTCTCCAGAAACAAG
GGCACGTCCGGGGTCAAGCCGAGGCGGCGGACGCGGCAGATGCGGGGAAG
ACGAATGTCTCCTCACCCGCGGTTTCACCCGTAGCCTCCCCCATCGACAA
GATATAGATTTCGGCAACGGGCACATGGACAGTAGAATTCACCGGTGATG
ATGTGATATAATGCAATCATAGTAAATTCAAAAGTTTGATGTAATTGAAC
GTTGATGGCCGTATGTAGAAGCTAGTGGTTGAATCCTCGTGGACTTCGTG
AGGAACTAAGAACACACCAGTGGGTGTAAGCGACCTCTCTGCAGGAGCGC
GAAAAACAAAAGACAAAGATGTGTCAAGGCACCCAATTTCTAT
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protein sequence of rna2120

>rna2120-protein ID=rna2120-protein|Name=rna2120|organism=Nannochloropsis gaditana|type=polypeptide|length=387bp
MEMELERDWLSEGYCKGGTGRIGAQEEEVWDQNCATDCGHYGPQTSKYTS
FQPHRAIPMISFVRGKTRYADPKDVDGDFNHDNDRHPAPGPASDDVCPST
LYAELIARPGEEPDVSILNDNDISILPTRKRRRRPCERPQRTPLGSSATA
ASSLTGDQNDRIEENERPYYKMVHGERKAVEPCVTLISASASSPVIFIVD
EDDSEKETSGHATISAFDCLVCGERVTSTDRATHERSTLHTFNAKKRVSC
GRIMLPESNRGVQLLARLGWKEDTGLGKHAQGSVQPVKSILKLDRTCLGH
QPLPPARVTHFPSHDAGQAARARDGKSRAQRKVEEVERRVHEGRAAAREG
FVLSKKGERCETARGRRRRLEKEKESWSRISAALNQE
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mRNA from alignment at CM002458.1:929665..931130+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2120 ID=rna2120|Name=rna2120|organism=Nannochloropsis gaditana|type=mRNA|length=1466bp|location=Sequence derived from alignment at CM002458.1:929665..931130+ (Nannochloropsis gaditana)
GCGGCCTTACATTTTTACAAACACTGTATCTTACCTGCTTTCCTTACATC
AGGTAAATGACGCATGGAAATGGAACTTGAAAGGGACTGGTTGTCGGAAG
GCTACTGTAAAGGTGGTACAGGGAGAATTGGGGcccaagaagaggaggtg
tgGGACCAGAATTGCGCCACCGATTGCGGCCATTATGGACCACAGACATC
TAAATATACCTCCTTTCAACCGCACCGAGCCATTCCAATGATTAGCTTTG
TGCGCGGTAAAACCCGGTATGCAGACCCGAAGGACGTTGATGGGGATTTC
AATCATGACAACGATCGTCATCCTGCTCCGGGCCCGGCATCAGACGACGT
GTGCCCGTCAACTTTGTACGCGGAGCTGATAGCACGGCCAGGTGAAGAGC
CCGACGTCAGTATATTAAATGATAACGATATTAGCATACTCCCGACGCGG
aagcggcgaagaaggcccTGCGAACGACCCCAGCGAACGCCCTTGGGCTC
GAGTGCGACAGCGGCTTCATCACTGACGGGGGACCAAAATGACCGCATTG
AAGAAAATGAGAGGCCCTACTACAAAATGGTGCATGGTGAACGAAAAGCC
GTGGAACCTTGCGTAACTTTGATCTCCGCAAGCGCGAGCAGCCCCGTCAT
TTTTATCGTAGATGAGGACGACTCCGAGAAGGAGACATCTGGCCACGCCA
CCATTTCCGCCTTCGACTGCCTGGTGTGTGGCGAACGGGTGACCTCCACC
GACCGTGCTACACACGAACGAAGTACCCTTCACACATTCAACGCCAAGAA
AAGAGTTTCTTGCGGTCGTATCATGCTTCCAGAAAGCAATCGCGGCGTGC
AATTATTGGCCCGTctggggtggaaggaggacacgggACTGGGCAAACAT
GCTCAGGGGTCCGTGCAGCCGGTCAAATCGATTCTGAAACTTGATCGGAC
ATGCCTAGGGCACcagccgcttcctcctgcacgcgtGACGCATTTCCCAA
GCCACGACGCGGGGCAGGCAGCCCGAGCCCGCGATGGGAAAAGTCGGGCG
CAAcggaaagtggaggaggtcgagcgACGAGTGcacgaagggagggcggc
ggcccgGGAGGGATTTGTCCTTTCCAAGAAAGGGGAGCGTTGCGAGACGg
ccaggggaagaagaaggcgcttggaaaaagagaaagagagttGGTCGAGG
ATTTCGGCGGCCCTAAATCAGGAATAAAGAGGAATTACGCGGAAGACGCA
ATGCTCTTGTCTGTTGAGTGAGGAAGCAAAGAATGTACATAGAGATAGAT
GCCAGGACCTAAAGCTTATTTTGCGGTGTGAGGCACATCATGTCAACAGG
CGTCACGCGTTTCTTATTACTCGTCAGTAATTCTTTGTCAATTCACTAAC
TTATCGCTACCTGATTTGCAATCCTTCGTTCGAAAACATAGATGTGCGTG
CCCCCGTAAAGCTGCC
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Coding sequence (CDS) from alignment at CM002458.1:929665..931130+

>rna2120 ID=rna2120|Name=rna2120|organism=Nannochloropsis gaditana|type=CDS|length=1164bp|location=Sequence derived from alignment at CM002458.1:929665..931130+ (Nannochloropsis gaditana)
ATGGAAATGGAACTTGAAAGGGACTGGTTGTCGGAAGGCTACTGTAAAGG
TGGTACAGGGAGAATTGGGGcccaagaagaggaggtgtgGGACCAGAATT
GCGCCACCGATTGCGGCCATTATGGACCACAGACATCTAAATATACCTCC
TTTCAACCGCACCGAGCCATTCCAATGATTAGCTTTGTGCGCGGTAAAAC
CCGGTATGCAGACCCGAAGGACGTTGATGGGGATTTCAATCATGACAACG
ATCGTCATCCTGCTCCGGGCCCGGCATCAGACGACGTGTGCCCGTCAACT
TTGTACGCGGAGCTGATAGCACGGCCAGGTGAAGAGCCCGACGTCAGTAT
ATTAAATGATAACGATATTAGCATACTCCCGACGCGGaagcggcgaagaa
ggcccTGCGAACGACCCCAGCGAACGCCCTTGGGCTCGAGTGCGACAGCG
GCTTCATCACTGACGGGGGACCAAAATGACCGCATTGAAGAAAATGAGAG
GCCCTACTACAAAATGGTGCATGGTGAACGAAAAGCCGTGGAACCTTGCG
TAACTTTGATCTCCGCAAGCGCGAGCAGCCCCGTCATTTTTATCGTAGAT
GAGGACGACTCCGAGAAGGAGACATCTGGCCACGCCACCATTTCCGCCTT
CGACTGCCTGGTGTGTGGCGAACGGGTGACCTCCACCGACCGTGCTACAC
ACGAACGAAGTACCCTTCACACATTCAACGCCAAGAAAAGAGTTTCTTGC
GGTCGTATCATGCTTCCAGAAAGCAATCGCGGCGTGCAATTATTGGCCCG
TctggggtggaaggaggacacgggACTGGGCAAACATGCTCAGGGGTCCG
TGCAGCCGGTCAAATCGATTCTGAAACTTGATCGGACATGCCTAGGGCAC
cagccgcttcctcctgcacgcgtGACGCATTTCCCAAGCCACGACGCGGG
GCAGGCAGCCCGAGCCCGCGATGGGAAAAGTCGGGCGCAAcggaaagtgg
aggaggtcgagcgACGAGTGcacgaagggagggcggcggcccgGGAGGGA
TTTGTCCTTTCCAAGAAAGGGGAGCGTTGCGAGACGgccaggggaagaag
aaggcgcttggaaaaagagaaagagagttGGTCGAGGATTTCGGCGGCCC
TAAATCAGGAATAA
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Synonyms
Publications