EWM28589.1, cds2112 (CDS) Nannochloropsis gaditana

Overview
NameEWM28589.1
Unique Namecds2112
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:929728..930891 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28589.1
Productg patch domain containing protein
Orig transcript idgnl|cribi|Naga_100009g40.632.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:929728..930891 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR000467G_patch_dom
Homology
[Close]
BLAST of EWM28589.1 vs. NCBI_GenBank
Match: gi|585111007|gb|EWM28589.1| (g patch domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 800.816 bits (2067), Expect = 0.000e+0
Identity = 387/387 (100.00%), Postives = 387/387 (100.00%), Query Frame = 0 
Query:    1 MEMELERDWLSEGYCKGGTGRIGAQEEEVWDQNCATDCGHYGPQTSKYTSFQPHRAIPMISFVRGKTRYADPKDVDGDFNHDNDRHPAPGPASDDVCPSTLYAELIARPGEEPDVSILNDNDISILPTRKRRRRPCERPQRTPLGSSATAASSLTGDQNDRIEENERPYYKMVHGERKAVEPCVTLISASASSPVIFIVDEDDSEKETSGHATISAFDCLVCGERVTSTDRATHERSTLHTFNAKKRVSCGRIMLPESNRGVQLLARLGWKEDTGLGKHAQGSVQPVKSILKLDRTCLGHQPLPPARVTHFPSHDAGQAARARDGKSRAQRKVEEVERRVHEGRAAAREGFVLSKKGERCETARGRRRRLEKEKESWSRISAALNQE 387
            MEMELERDWLSEGYCKGGTGRIGAQEEEVWDQNCATDCGHYGPQTSKYTSFQPHRAIPMISFVRGKTRYADPKDVDGDFNHDNDRHPAPGPASDDVCPSTLYAELIARPGEEPDVSILNDNDISILPTRKRRRRPCERPQRTPLGSSATAASSLTGDQNDRIEENERPYYKMVHGERKAVEPCVTLISASASSPVIFIVDEDDSEKETSGHATISAFDCLVCGERVTSTDRATHERSTLHTFNAKKRVSCGRIMLPESNRGVQLLARLGWKEDTGLGKHAQGSVQPVKSILKLDRTCLGHQPLPPARVTHFPSHDAGQAARARDGKSRAQRKVEEVERRVHEGRAAAREGFVLSKKGERCETARGRRRRLEKEKESWSRISAALNQE
Sbjct:    1 MEMELERDWLSEGYCKGGTGRIGAQEEEVWDQNCATDCGHYGPQTSKYTSFQPHRAIPMISFVRGKTRYADPKDVDGDFNHDNDRHPAPGPASDDVCPSTLYAELIARPGEEPDVSILNDNDISILPTRKRRRRPCERPQRTPLGSSATAASSLTGDQNDRIEENERPYYKMVHGERKAVEPCVTLISASASSPVIFIVDEDDSEKETSGHATISAFDCLVCGERVTSTDRATHERSTLHTFNAKKRVSCGRIMLPESNRGVQLLARLGWKEDTGLGKHAQGSVQPVKSILKLDRTCLGHQPLPPARVTHFPSHDAGQAARARDGKSRAQRKVEEVERRVHEGRAAAREGFVLSKKGERCETARGRRRRLEKEKESWSRISAALNQE 387
[Close]
BLAST of EWM28589.1 vs. NCBI_GenBank
Match: gi|298713141|emb|CBJ33494.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 112.464 bits (280), Expect = 3.348e-24
Identity = 72/185 (38.92%), Postives = 97/185 (52.43%), Query Frame = 0 
Query:  156 GDQNDRIEENERPYYKMVHGERKAVEPCVTLISASASSPV---IFIVDEDDS---EKETSGHATISAFDCLVCGERVTSTDRATHERSTLHTFNAKKRVSCGRIMLPESNRGVQLLARLGWKEDTGLGKHAQGSVQPVKSILKLDRTCLGHQPLPPARVTHFPSHDAGQAARARDGKSRAQRKVE 334
            G ++D +E   RP  +    ER +      +  A++  P+   +F   ++ +   + E++G A    F C VCGERV S     H  STLH FN + R    ++ + ESN+G QLLA +GWK D GLG   QG V P+++  K D T LG       RVTHFPSH   QA  A DGKS A R  E
Sbjct:   39 GQRSDPVETTPRPSRRPPAAERNSYSQEGEMAMAASGIPLEPAVFGPPQNPNLAGQDESAGGAE-KGFFCRVCGERVASLSEEKHNTSTLHIFNQQHRPQGRKVQIHESNKGFQLLAGMGWKLDEGLGSRKQGRVNPLQTTFKRDTTGLGAGGKLRPRVTHFPSHVPSQALNAPDGKSDAVRAHE 222
[Close]
BLAST of EWM28589.1 vs. NCBI_GenBank
Match: gi|570959458|gb|ETP24437.1| (hypothetical protein F441_02570 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 106.301 bits (264), Expect = 9.111e-24
Identity = 52/124 (41.94%), Postives = 74/124 (59.68%), Query Frame = 0 
Query:  217 FDCLVCGERVTSTDRATHERSTLHTFNAKKRVSCGRIMLPESNRGVQLLARLGWKEDTGLGKHAQGSVQPVKSILKLDRTCLGHQPLPP-ARVTHFPSHDAGQAARARDGKSRAQRKVEEVERR 339
            + C  C   V  +  A H+++T H  ++ K VS  ++ LPE+NRG QLL  +GW+++ GLG    G V P+ +  K DR  +G QP    AR+THFPSHD  QA  A DG+S AQR  + + R+
Sbjct:    2 YFCAACNVYVKDSSVAEHDQTTAHLLSSSKGVSVRKVWLPETNRGYQLLKSMGWQDNGGLGPTGDGKVMPIATTFKTDRAGVGVQPTAKQARITHFPSHDEQQARMAVDGRSEAQRMQDRLTRK 125
[Close]
BLAST of EWM28589.1 vs. NCBI_GenBank
Match: gi|675181941|ref|XP_008899855.1| (hypothetical protein PPTG_07430 [Phytophthora parasitica INRA-310] >gi|566031692|gb|ETI54603.1| hypothetical protein F443_02612 [Phytophthora parasitica P1569] >gi|567969371|gb|ETK94463.1| hypothetical protein L915_02495 [Phytophthora parasitica] >gi|567997761|gb|ETL47840.1| hypothetical protein L916_02466 [Phytophthora parasitica] >gi|568026980|gb|ETM00950.1| hypothetical protein L917_02395 [Phytophthora parasitica] >gi|568100580|gb|ETN15279.1| hypothetical protein PPTG_07430 [Phytophthora parasitica INRA-310] >gi|570335409|gb|ETO83357.1| hypothetical protein F444_02612 [Phytophthora parasitica P1976] >gi|570995570|gb|ETP52391.1| hypothetical protein F442_02588 [Phytophthora parasitica P10297] >gi|970649873|gb|KUF89037.1| hypothetical protein AM588_10002125 [Phytophthora nicotianae])

HSP 1 Score: 105.145 bits (261), Expect = 2.419e-23
Identity = 51/124 (41.13%), Postives = 74/124 (59.68%), Query Frame = 0 
Query:  217 FDCLVCGERVTSTDRATHERSTLHTFNAKKRVSCGRIMLPESNRGVQLLARLGWKEDTGLGKHAQGSVQPVKSILKLDRTCLGHQPLPP-ARVTHFPSHDAGQAARARDGKSRAQRKVEEVERR 339
            + C  C   V  +  A H+++T H  ++ K VS  ++ LPE+NRG QLL  +GW+++ GLG    G V P+ +  K DR  +G QP    AR+THFP+HD  QA  A DG+S AQR  + + R+
Sbjct:    2 YFCAACNVYVKDSSVAEHDQTTAHLLSSSKGVSVRKVWLPETNRGYQLLKSMGWQDNGGLGPTGDGKVMPIATTFKTDRAGVGVQPTAKQARITHFPAHDEQQARMAVDGRSEAQRMQDRLTRK 125
[Close]
BLAST of EWM28589.1 vs. NCBI_GenBank
Match: gi|568057460|gb|ETM54125.1| (hypothetical protein L914_02489, partial [Phytophthora parasitica])

HSP 1 Score: 103.219 bits (256), Expect = 3.432e-23
Identity = 50/116 (43.10%), Postives = 70/116 (60.34%), Query Frame = 0 
Query:  217 FDCLVCGERVTSTDRATHERSTLHTFNAKKRVSCGRIMLPESNRGVQLLARLGWKEDTGLGKHAQGSVQPVKSILKLDRTCLGHQPLPP-ARVTHFPSHDAGQAARARDGKSRAQR 331
            + C  C   V  +  A H+++T H  ++ K VS  ++ LPE+NRG QLL  +GW+++ GLG    G V P+ +  K DR  +G QP    AR+THFP+HD  QA  A DG+S AQR
Sbjct:    2 YFCASCNVYVKDSSVAEHDQTTAHLLSSSKGVSVRKVWLPETNRGYQLLKSMGWQDNGGLGPTGDGKVMPIATTFKTDRAGVGVQPTAKQARITHFPAHDEQQARMAVDGRSEAQR 117
[Close]
BLAST of EWM28589.1 vs. NCBI_GenBank
Match: gi|695458172|ref|XP_009537366.1| (hypothetical protein PHYSODRAFT_356064 [Phytophthora sojae] >gi|348667975|gb|EGZ07800.1| hypothetical protein PHYSODRAFT_356064 [Phytophthora sojae])

HSP 1 Score: 103.605 bits (257), Expect = 9.276e-23
Identity = 52/124 (41.94%), Postives = 72/124 (58.06%), Query Frame = 0 
Query:  217 FDCLVCGERVTSTDRATHERSTLHTFNAKKRVSCGRIMLPESNRGVQLLARLGWKEDTGLGKHAQGSVQPVKSILKLDRTCLGHQPLPP-ARVTHFPSHDAGQAARARDGKSRAQRKVEEVERR 339
            + C  C   V  +  A H++ST H  ++   VS  ++ LPE+NRG Q+L  +GW+E  GLG    G V P+ +  K DR  +G QP    ARVTHFP+HD  QA  A DG+S AQR  + + R+
Sbjct:    2 YFCAACKLYVKDSSVAEHDQSTAHLLSSSNGVSVRKVWLPETNRGYQMLKSMGWRESGGLGPAGDGKVTPIATTFKTDRAGVGLQPTAKQARVTHFPAHDEQQARLAADGRSEAQRMQDRLARK 125
[Close]
BLAST of EWM28589.1 vs. NCBI_GenBank
Match: gi|301092495|ref|XP_002997103.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262111639|gb|EEY69691.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 103.219 bits (256), Expect = 1.156e-22
Identity = 51/116 (43.97%), Postives = 70/116 (60.34%), Query Frame = 0 
Query:  217 FDCLVCGERVTSTDRATHERSTLHTFNAKKRVSCGRIMLPESNRGVQLLARLGWKEDTGLGKHAQGSVQPVKSILKLDRTCLGHQPLPP-ARVTHFPSHDAGQAARARDGKSRAQR 331
            + C  C   V  +  A H+++T H  ++ K VS  ++ LPE+NRG Q+L  +GW+E+ GLG    G V P+ +I K DR  +G Q     ARVTHFP+HD  QA  A DG+S AQR
Sbjct:    2 YFCAACNVYVKDSCVAEHDQTTAHLLSSSKGVSVRKVWLPETNRGYQMLKSMGWQENGGLGPTGDGKVTPIATIFKTDRAGVGVQSTAKQARVTHFPAHDEQQATMAADGRSEAQR 117
[Close]
BLAST of EWM28589.1 vs. NCBI_GenBank
Match: gi|1214713247|gb|OWZ24148.1| (hypothetical protein PHMEG_000852 [Phytophthora megakarya])

HSP 1 Score: 100.138 bits (248), Expect = 1.580e-21
Identity = 49/123 (39.84%), Postives = 71/123 (57.72%), Query Frame = 0 
Query:  217 FDCLVCGERVTSTDRATHERSTLHTFNAKKRVSCGRIMLPESNRGVQLLARLGWKEDTGLGKHAQGSVQPVKSILKLDRTCLGHQPLPPARVTHFPSHDAGQAARARDGKSRAQRKVEEVERR 339
            + C  C   V  +  + H+++T H  +  K VS  ++ LPE+NRG Q+L  +GW+E+ GLG    G V P+ +I K DR  +G Q     RVTHFP HD  QA  + DG+S AQR  + + R+
Sbjct:    2 YFCAACNVYVKDSSVSEHDQTTAHLLSRSKGVSVRKVWLPETNRGYQMLKSMGWQENGGLGSAGDGKVTPIATIFKTDRAGVGLQT-QQTRVTHFPPHDEQQARMSADGRSEAQRMQDRLARK 123
[Close]
BLAST of EWM28589.1 vs. NCBI_GenBank
Match: gi|970659036|gb|KUF96727.1| (G patch domain and ankyrin repeat-containing protein 1 [Phytophthora nicotianae])

HSP 1 Score: 104.76 bits (260), Expect = 8.175e-21
Identity = 51/126 (40.48%), Postives = 75/126 (59.52%), Query Frame = 0 
Query:  215 SAFDCLVCGERVTSTDRATHERSTLHTFNAKKRVSCGRIMLPESNRGVQLLARLGWKEDTGLGKHAQGSVQPVKSILKLDRTCLGHQPLPP-ARVTHFPSHDAGQAARARDGKSRAQRKVEEVERR 339
            + + C  C   V  +  A H+++T H  ++ K VS  ++ LPE+NRG QLL  +GW+++ GLG    G V P+ +  K DR  +G QP    AR+THFP+HD  QA  A DG+S AQR  + + R+
Sbjct:  449 AMYFCAACNVYVKDSSVAEHDQTTAHLLSSSKGVSVRKVWLPETNRGYQLLKSMGWQDNGGLGPTGDGKVMPIATTFKTDRAGVGVQPTAKQARITHFPAHDEQQARMAVDGRSEAQRMQDRLTRK 574
[Close]
BLAST of EWM28589.1 vs. NCBI_GenBank
Match: gi|970635054|gb|KUF80071.1| (G patch domain and ankyrin repeat-containing protein 1 [Phytophthora nicotianae])

HSP 1 Score: 104.76 bits (260), Expect = 8.406e-21
Identity = 51/126 (40.48%), Postives = 75/126 (59.52%), Query Frame = 0 
Query:  215 SAFDCLVCGERVTSTDRATHERSTLHTFNAKKRVSCGRIMLPESNRGVQLLARLGWKEDTGLGKHAQGSVQPVKSILKLDRTCLGHQPLPP-ARVTHFPSHDAGQAARARDGKSRAQRKVEEVERR 339
            + + C  C   V  +  A H+++T H  ++ K VS  ++ LPE+NRG QLL  +GW+++ GLG    G V P+ +  K DR  +G QP    AR+THFP+HD  QA  A DG+S AQR  + + R+
Sbjct:  449 AMYFCAACNVYVKDSSVAEHDQTTAHLLSSSKGVSVRKVWLPETNRGYQLLKSMGWQDNGGLGPTGDGKVMPIATTFKTDRAGVGVQPTAKQARITHFPAHDEQQARMAVDGRSEAQRMQDRLTRK 574
The following BLAST results are available for this feature:
BLAST of EWM28589.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111007|gb|EWM28589.1|0.000e+0100.00g patch domain containing protein [Nannochloropsis... [more]
gi|298713141|emb|CBJ33494.1|3.348e-2438.92conserved unknown protein [Ectocarpus siliculosus][more]
gi|570959458|gb|ETP24437.1|9.111e-2441.94hypothetical protein F441_02570 [Phytophthora para... [more]
gi|675181941|ref|XP_008899855.1|2.419e-2341.13hypothetical protein PPTG_07430 [Phytophthora para... [more]
gi|568057460|gb|ETM54125.1|3.432e-2343.10hypothetical protein L914_02489, partial [Phytopht... [more]
gi|695458172|ref|XP_009537366.1|9.276e-2341.94hypothetical protein PHYSODRAFT_356064 [Phytophtho... [more]
gi|301092495|ref|XP_002997103.1|1.156e-2243.97conserved hypothetical protein [Phytophthora infes... [more]
gi|1214713247|gb|OWZ24148.1|1.580e-2139.84hypothetical protein PHMEG_000852 [Phytophthora me... [more]
gi|970659036|gb|KUF96727.1|8.175e-2140.48G patch domain and ankyrin repeat-containing prote... [more]
gi|970635054|gb|KUF80071.1|8.406e-2140.48G patch domain and ankyrin repeat-containing prote... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2120rna2120Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications