rna2025, rna2025 (mRNA) Nannochloropsis gaditana

Overview
Namerna2025
Unique Namerna2025
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length855
Alignment locationCM002458.1:721555..723447 +

Link to JBrowse

Properties
Property NameValue
Productcharged multivesicular body protein 2a
Orig transcript idgnl|cribi|Naga_100177g5.1001.mrna
Orig protein idgnl|cribi|Naga_100177g5.1001
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:721555..723447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100177g5gene1936Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2025rna2025-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28644.1cds2017Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2025 ID=rna2025|Name=rna2025|organism=Nannochloropsis gaditana|type=mRNA|length=855bp
ATGGATCCGGCGACGATAAGGATTTCCGGTGCATTTAGTCGCCTTCTCGA
GAGCTTCAGAGTGCCTTCGTCTGCACTTGCTCCGAGGCTGTCGATTTCCG
CTCAGCGGGGCAAGCCCGCCTCTGACAACGTCGAGCCGGCCCTGCTCTTA
CGCCTCGATTACCTTTGGAAACAGGCCTTAAGTCACCTTCCCACCAATCA
AACATATTCACGTGCGTTGTCTCGAAAATTTATTCGCCTGCGCGACTTGT
TCTCCGCTCATGAAGTCCTACATCCACACTTGTCCGACTGCCTATGTCCT
GTGTGCGGGGTGATCCTTTTTCCTGGTGTCACGGCTCGGACCCGCGTCCA
ACATGGGGCCAAGAGATCTCAGGCCAATGCCCGCCGTAAGTGGATGCGCC
TTTCTAATCAAAACAGTGACCCGAGGAGTGGATATGCGGCCAACGTGCCC
TGTTCGCTGAAGAACCGTGTGACCTACGCCTGTATGCTCTGCAATAGGGG
TTCGCGCACGATGGACGGGGCGACAAGGCGGTCGGAAGATAAGCGGAGCA
CATTGGGTGAGGCAAGAAAGGCTGAGACGAGCCTTCTTTGCCCTGGTGCC
TCTGGGGAGCTCTCATCGTCTTCAAAGCAGCAAGTTCCAGACACGACGGA
GGAGGAGGACTTCATTCCTCTGCAATCGGAAAGCTTCAGACAACTTCAAA
AGCACCAGAAAACTTTAGCCCCGCCACGCTTGCTCCTGGACCCAAAGCCA
CGCAAACGAAAGCGCCAGGAAGAACCAAGCCGGGATGGTCAGAAGTCGGT
GTCTCGGTCTCTAGGTCAGGTACGAGGATTTCTCGCGTCCTTCCAGAAAG
GATGA
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protein sequence of rna2025

>rna2025-protein ID=rna2025-protein|Name=rna2025|organism=Nannochloropsis gaditana|type=polypeptide|length=188bp
MWPTVDCKCLRTCCGAKEAVNHSYFLQQRRTSRLIKAMFGQKKLTPKEQL
RETKKEIRHNERDMDRELQNLAREEAKLIHDIKKMAANNQHGPLKVMAKN
LVQLRAQKDKLITMKATMTGVGYKASLMHSQAAVGQAMSRMTGVMGDMNE
MMDATKTSKVMTEFARQNEYMNVKEDLLDDALMDASRV
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mRNA from alignment at CM002458.1:721555..723447+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2025 ID=rna2025|Name=rna2025|organism=Nannochloropsis gaditana|type=mRNA|length=1893bp|location=Sequence derived from alignment at CM002458.1:721555..723447+ (Nannochloropsis gaditana)
ATGTGGCCGACCGTCGATTGTAAATGCCTTCGTACATGTTGTGGGGCTAA
AGAAGGTGTCATTTAACACATGACGAGAAATGAATTGGCCAATGAAAGAG
AAACATTACAAGCAGAGGTTTACTTTTTTAGAAGGAATAACTTTGTTATG
TATGGAGAagtgtccttctccctttaAAAAGTATTTTCAGAGATCTATGT
CTATGCAGTCTTCGGCATTGATTTCCTTTGGGGGCCAATACTATCATTTG
ATTCTTTTATTCGTATCGCTTCACGCCTTTCTCCAAGTGAGGCCCAGGAA
TAGAATACTTCTCATGTTAAAAAACAGTTGCAAGTTTCATGGAGACGCTT
GTGTCCCCGGGTGACGGCTGAAAAATAGTAAAGCTCGTCTCAAACCCGAG
AATGTGTCGAATACAATCGACAACATCAACAATAGGACTAAAAATGTATA
ATGCGGAATCCATACATGTACATGTTTCAAGCACAAACAGCCAAGCCTTT
AGGCGGCAAAAACGGAGAGGCGGGGTGTTGACCAAGAATCGGGTAGCAAT
TGGAAACCAGTTTCCTATTCATCCACAATACTGCTCACCGTTAGCAGAAT
AAACTTATTCTCATCTATGAGCCGCGGTGAGCGCCGTTTTCGTCCGTTAC
GCTCTTTAAGTCGCTCTGAGTGGCGCATGGGCCGGGGCGAAGGACCTCCC
TGCTTGTACATGGGGCAGGGCAGGCCATGCTACTTTTAAAACAACCGAAT
TGGAAGCCATTATCGTCGGTCATGCCATTCGATGTGAAGTTAACAACATT
TTTGCTGTATTGACATTTCTGATTCTACTATCAAACAGGGCTTGGTCTTA
GGCTGGCGCATATATACATAAGCCGTTAATCATTCCTACTTCCTGCAGCA
GCGGCGTACAAGCCGTCTTATCAAAGCTATGTTTGGACAGAAAAAATTGA
CCCCCAAAGAGCAGCTCCGGGAGACAAAAAAGGAGATCAGACACAATGAA
CGGGACATGGACCGAGAGCTGCAGAATTTGGCAAGAGAAGAAGCAAAGCT
CATCCATGACATTAAAAAAATGGCTGCAAACAATCAGCATGGACCCTTGA
AAGTCATGGCGAAGAACCTGGTACAACTGCGGGCGCAAAAGGACAAGCTC
ATCACAATGAAGGCTACCATGACAGGTGTAGGGTACAAGGCATCATTAAT
GCATTCGCAGGCGGCTGTCGGCCAGGCAATGAGCAGGATGACCGGGGTAC
GTCGGTGGCGGACTTAGATATGGGGGGTGTCGTGTGGATGAAAGGAGATG
TGCGTTTTTGAGCTGCTTGCTGATTCTTACGAGTCCTTGGCTTCCAGAAG
AACTTGCTATCAGATGCAGAAGATTTTTTCACCTTGATTTCGGTTTGGGT
GTGGTGATTACGGACTTCAGATGAATGTCTTGTCCTCAAAGTTCGCGTTT
CTTGTTCTCGAAAATGTATTTGTGTTTTCCGGTATTTTTTACTGGTATTA
ACTTAACTGTGCGTGTCGTGTGTGACGAGGCCTTCTTCTATTTGGGTAGC
ACGTGGTTGAAGCAACGCAGGCATTTAGCGATTTTCACAAGCATCTATTC
TTCAAATTTTGCAACAGTTGATTTTCTTCTTATTTCATCGCAACAGGTGA
TGGGTGATATGAACGAAATGATGGACGCTACAAAGACAAGCAAGGTTATG
ACAGAGTTTGCGCGACAGAACGAGTACATGAATGTAAAGGAGGATTTGCT
GGACGACGCTTTGATGGATGCGGTAAGTTTGGCAGTCCGCGCAAGatttg
aaaagagagagataAAAGAGGTCCAGTGGATACTTCTTCGACATCCTGTT
CACGATGATTCTAACCTGCTGTCTGAGTAAGTCAAGGGTGTGA
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Coding sequence (CDS) from alignment at CM002458.1:721555..723447+

>rna2025 ID=rna2025|Name=rna2025|organism=Nannochloropsis gaditana|type=CDS|length=2268bp|location=Sequence derived from alignment at CM002458.1:721555..723447+ (Nannochloropsis gaditana)
ATGTGGCCGACCGTCGATTGTAAATGCCTTCGTACATGTTGTGGGGCTAA
AGAAGCCGTTAATCATTCCTACTTCCTGCAGCAGCGGCGTACAAGCCGTC
TTATCAAAGCTATGTTTGGACAGAAAAAATTGACCCCCAAAGAGCAGCTC
CGGGAGACAAAAAAGGAGATCAGACACAATGAACGGGACATGGACCGAGA
GCTGCAGAATTTGGCAAGAGAAGAAGCAAAGCTCATCCATGACATTAAAA
AAATGGCTGCAAACAATCAGCATGGACCCTTGAAAGTCATGGCGAAGAAC
CTGGTACAACTGCGGGCGCAAAAGGACAAGCTCATCACAATGAAGGCTAC
CATGACAGGTGTAGGGTACAAGGCATCATTAATGCATTCGCAGGCGGCTG
TCGGCCAGGCAATGAGCAGGATGACCGGGGTGATGGGTGATATGAACGAA
ATGATGGACGCTACAAAGACAAGCAAGGTTATGACAGAGTTTGCGCGACA
GAACGAGTACATGAATGTAAAGGAGGATTTGCTGGACGACGCTTTGATGG
ATGCGTCAAGGGTGTGAATGTGGCCGACCGTCGATTGTAAATGCCTTCGT
ACATGTTGTGGGGCTAAAGAAGCCGTTAATCATTCCTACTTCCTGCAGCA
GCGGCGTACAAGCCGTCTTATCAAAGCTATGTTTGGACAGAAAAAATTGA
CCCCCAAAGAGCAGCTCCGGGAGACAAAAAAGGAGATCAGACACAATGAA
CGGGACATGGACCGAGAGCTGCAGAATTTGGCAAGAGAAGAAGCAAAGCT
CATCCATGACATTAAAAAAATGGCTGCAAACAATCAGCATGGACCCTTGA
AAGTCATGGCGAAGAACCTGGTACAACTGCGGGCGCAAAAGGACAAGCTC
ATCACAATGAAGGCTACCATGACAGGTGTAGGGTACAAGGCATCATTAAT
GCATTCGCAGGCGGCTGTCGGCCAGGCAATGAGCAGGATGACCGGGGTGA
TGGGTGATATGAACGAAATGATGGACGCTACAAAGACAAGCAAGGTTATG
ACAGAGTTTGCGCGACAGAACGAGTACATGAATGTAAAGGAGGATTTGCT
GGACGACGCTTTGATGGATGCGTCAAGGGTGTGAATGTGGCCGACCGTCG
ATTGTAAATGCCTTCGTACATGTTGTGGGGCTAAAGAAGCCGTTAATCAT
TCCTACTTCCTGCAGCAGCGGCGTACAAGCCGTCTTATCAAAGCTATGTT
TGGACAGAAAAAATTGACCCCCAAAGAGCAGCTCCGGGAGACAAAAAAGG
AGATCAGACACAATGAACGGGACATGGACCGAGAGCTGCAGAATTTGGCA
AGAGAAGAAGCAAAGCTCATCCATGACATTAAAAAAATGGCTGCAAACAA
TCAGCATGGACCCTTGAAAGTCATGGCGAAGAACCTGGTACAACTGCGGG
CGCAAAAGGACAAGCTCATCACAATGAAGGCTACCATGACAGGTGTAGGG
TACAAGGCATCATTAATGCATTCGCAGGCGGCTGTCGGCCAGGCAATGAG
CAGGATGACCGGGGTGATGGGTGATATGAACGAAATGATGGACGCTACAA
AGACAAGCAAGGTTATGACAGAGTTTGCGCGACAGAACGAGTACATGAAT
GTAAAGGAGGATTTGCTGGACGACGCTTTGATGGATGCGTCAAGGGTGTG
AATGTGGCCGACCGTCGATTGTAAATGCCTTCGTACATGTTGTGGGGCTA
AAGAAGCCGTTAATCATTCCTACTTCCTGCAGCAGCGGCGTACAAGCCGT
CTTATCAAAGCTATGTTTGGACAGAAAAAATTGACCCCCAAAGAGCAGCT
CCGGGAGACAAAAAAGGAGATCAGACACAATGAACGGGACATGGACCGAG
AGCTGCAGAATTTGGCAAGAGAAGAAGCAAAGCTCATCCATGACATTAAA
AAAATGGCTGCAAACAATCAGCATGGACCCTTGAAAGTCATGGCGAAGAA
CCTGGTACAACTGCGGGCGCAAAAGGACAAGCTCATCACAATGAAGGCTA
CCATGACAGGTGTAGGGTACAAGGCATCATTAATGCATTCGCAGGCGGCT
GTCGGCCAGGCAATGAGCAGGATGACCGGGGTGATGGGTGATATGAACGA
AATGATGGACGCTACAAAGACAAGCAAGGTTATGACAGAGTTTGCGCGAC
AGAACGAGTACATGAATGTAAAGGAGGATTTGCTGGACGACGCTTTGATG
GATGCGTCAAGGGTGTGA
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Synonyms
Publications