Naga_100177g5, gene1936 (gene) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	Naga_100177g5
Unique Name	gene1936
Type	gene
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002458.1:721555..723447 +

Link to JBrowse

Properties


Property Name	Value
Locus tag	Naga_100177g5
Gene biotype	protein_coding
Gbkey	Gene

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:721555..723447 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
SRP229557	2021-06-30
GO annotation for N. gaditana B31	2020-04-08
PRJNA174770	2019-07-03
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005768	endosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport
GO:0009987	cellular process

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ngnoL111	ngnoL111	Nannochloropsis gaditana (N. gaditana B-31)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO04G02700	NO04G02700	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
rna2025	rna2025-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
rna2025	rna2025	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of rna2025

>rna2025-protein ID=rna2025-protein|Name=rna2025|organism=Nannochloropsis gaditana|type=polypeptide|length=188bp
MWPTVDCKCLRTCCGAKEAVNHSYFLQQRRTSRLIKAMFGQKKLTPKEQL
RETKKEIRHNERDMDRELQNLAREEAKLIHDIKKMAANNQHGPLKVMAKN
LVQLRAQKDKLITMKATMTGVGYKASLMHSQAAVGQAMSRMTGVMGDMNE
MMDATKTSKVMTEFARQNEYMNVKEDLLDDALMDASRV

Synonyms

Publications