EWM28644.1, cds2017 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28644.1 vs. NCBI_GenBank
Match: gi|585111065|gb|EWM28644.1| (charged multivesicular body protein 2a [Nannochloropsis gaditana]) HSP 1 Score: 391.734 bits (1005), Expect = 5.393e-138 Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0 Query: 1 MWPTVDCKCLRTCCGAKEAVNHSYFLQQRRTSRLIKAMFGQKKLTPKEQLRETKKEIRHNERDMDRELQNLAREEAKLIHDIKKMAANNQHGPLKVMAKNLVQLRAQKDKLITMKATMTGVGYKASLMHSQAAVGQAMSRMTGVMGDMNEMMDATKTSKVMTEFARQNEYMNVKEDLLDDALMDASRV 188 MWPTVDCKCLRTCCGAKEAVNHSYFLQQRRTSRLIKAMFGQKKLTPKEQLRETKKEIRHNERDMDRELQNLAREEAKLIHDIKKMAANNQHGPLKVMAKNLVQLRAQKDKLITMKATMTGVGYKASLMHSQAAVGQAMSRMTGVMGDMNEMMDATKTSKVMTEFARQNEYMNVKEDLLDDALMDASRV Sbjct: 1 MWPTVDCKCLRTCCGAKEAVNHSYFLQQRRTSRLIKAMFGQKKLTPKEQLRETKKEIRHNERDMDRELQNLAREEAKLIHDIKKMAANNQHGPLKVMAKNLVQLRAQKDKLITMKATMTGVGYKASLMHSQAAVGQAMSRMTGVMGDMNEMMDATKTSKVMTEFARQNEYMNVKEDLLDDALMDASRV 188
BLAST of EWM28644.1 vs. NCBI_GenBank
Match: gi|1173932869|gb|OQR84767.1| (SNF7 family protein [Achlya hypogyna]) HSP 1 Score: 126.331 bits (316), Expect = 4.097e-33 Identity = 66/147 (44.90%), Postives = 94/147 (63.95%), Query Frame = 0 Query: 39 FGQKKLTPKEQLRETKKEIRHNERDMDRELQNLAREEAKLIHDIKKMAANNQHGPLKVMAKNLVQLRAQKDKLITMKATMTGVGYKASLMHSQAAVGQAMSRMTGVMGDMNEMMDATKTSKVMTEFARQNEYMNVKEDLLDDALMDA 185 FG+ + TP+EQ RE K+EI H +RD++RE L R+E L+ DIK+ A + K++AK LVQ+R QKDKL MKA + G+ +AS M +Q V M + T M N+ MD + K + EF +Q+E MN+KE++LDD L+DA Sbjct: 4 FGKPQKTPREQAREAKREIAHGQRDLEREKAALERQEKTLVLDIKRAAKDGNAAGTKILAKQLVQVRQQKDKLSVMKANLGGIAMQASTMAAQHVVMATMEKTTKTMVAANKQMDMGRIQKTLMEFEKQSEMMNMKEEMLDDTLIDA 150
BLAST of EWM28644.1 vs. NCBI_GenBank
Match: gi|669152822|ref|XP_008611973.1| (hypothetical protein SDRG_07892 [Saprolegnia diclina VS20] >gi|530736325|gb|EQC34567.1| hypothetical protein SDRG_07892 [Saprolegnia diclina VS20]) HSP 1 Score: 121.324 bits (303), Expect = 3.709e-31 Identity = 63/151 (41.72%), Postives = 98/151 (64.90%), Query Frame = 0 Query: 38 MFG---QKKLTPKEQLRETKKEIRHNERDMDRELQNLAREEAKLIHDIKKMAANNQHGPLKVMAKNLVQLRAQKDKLITMKATMTGVGYKASLMHSQAAVGQAMSRMTGVMGDMNEMMDATKTSKVMTEFARQNEYMNVKEDLLDDALMDA 185 MFG + K T +EQ RE K+EI H +RD++RE L R+E +L+ DIKK A + K++AK LVQ+RAQK+KL+ MK ++ G+G +AS M +Q + M + T M N+ MD ++ K + EF +Q+E M++ ++++DD L+DA Sbjct: 1 MFGFGKEPKKTAREQAREAKREIAHGQRDLEREKMTLERQEKQLVVDIKKAAKDGNQAGTKILAKQLVQIRAQKEKLMVMKVSLGGIGMQASAMAAQQTMVATMEKTTKTMVAANKQMDMSRIQKTLMEFEKQSELMSMGQEMIDDTLIDA 151
BLAST of EWM28644.1 vs. NCBI_GenBank
Match: gi|1173933530|gb|OQR85223.1| (hypothetical protein THRCLA_10733 [Thraustotheca clavata]) HSP 1 Score: 120.168 bits (300), Expect = 1.003e-30 Identity = 66/150 (44.00%), Postives = 94/150 (62.67%), Query Frame = 0 Query: 38 MFG--QKKLTPKEQLRETKKEIRHNERDMDRELQNLAREEAKLIHDIKKMAANNQHGPLKVMAKNLVQLRAQKDKLITMKATMTGVGYKASLMHSQAAVGQAMSRMTGVMGDMNEMMDATKTSKVMTEFARQNEYMNVKEDLLDDALMDA 185 MFG + K T +EQ RE K+EI H +RD++RE L R+E +LI DIKK A + K++AK LVQ+R QKDKL MK + GV +AS M +Q + M + T M N+ MD + K + E+ +QNE MN++E+++DD L+DA Sbjct: 1 MFGFREPKKTAREQAREAKREIAHGQRDLEREKMALERQEKQLIVDIKKAAKDGNQAGTKILAKQLVQIRQQKDKLSLMKLNLNGVAMQASSMATQQLMVATMEKTTKTMVATNKQMDMNRFQKTLMEYEKQNEMMNIREEMIDDTLIDA 150
BLAST of EWM28644.1 vs. NCBI_GenBank
Match: gi|813112379|ref|XP_012195266.1| (hypothetical protein SPRG_19070 [Saprolegnia parasitica CBS 223.65] >gi|641540450|gb|KDO34232.1| hypothetical protein SPRG_19070 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 119.783 bits (299), Expect = 1.947e-30 Identity = 64/151 (42.38%), Postives = 97/151 (64.24%), Query Frame = 0 Query: 38 MFGQKKLTPK---EQLRETKKEIRHNERDMDRELQNLAREEAKLIHDIKKMAANNQHGPLKVMAKNLVQLRAQKDKLITMKATMTGVGYKASLMHSQAAVGQAMSRMTGVMGDMNEMMDATKTSKVMTEFARQNEYMNVKEDLLDDALMDA 185 MFG K PK EQ RE K+EI H +RD++RE L R+E +LI DIKK A + K++AK LVQ+RAQK+KL+ MK ++ G+G +AS M +Q + M + T M N+ MD ++ K + EF +Q+E M++ +++++D L+DA Sbjct: 1 MFGFGKAPPKTAREQAREAKREIAHGQRDLEREKMVLERQEKQLILDIKKAAKDGNQAGTKILAKQLVQVRAQKEKLMVMKVSLGGIGMQASAMAAQQTMVATMEKTTKTMVAANKQMDMSRIQKTLMEFEKQSELMSMGQEMMEDTLIDA 151
BLAST of EWM28644.1 vs. NCBI_GenBank
Match: gi|1072226045|gb|OEU10789.1| (Snf7-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 119.013 bits (297), Expect = 6.452e-30 Identity = 64/154 (41.56%), Postives = 104/154 (67.53%), Query Frame = 0 Query: 39 FGQKKLTPKEQL----RETKKEIRHNERDMDRELQNLAREEAKLIHDIK---KMAANNQHGPLKVMAKNLVQLRAQKDKLITMKATMTGVGYKASLMHSQAAVGQAMSRMTGVMGDMNEMMDATKTSKVMTEFARQNEYMNVKEDLLDDALMDA 185 F +KK TPKE RETKKE+R ++R+MDREL+ L R+E+++ ++K K+ ++++ L +AK LVQ+R Q++K++T KA + VG A+ M +Q A A+ ++ M NE M+ +T+K++ EF R+NE + VK++++DDALMDA Sbjct: 10 FAEKK-TPKELAKEAKRETKKEVRSSQREMDRELRELDRQESQITKELKQRAKLTSSSKDPALAALAKQLVQIRKQREKIMTAKAHIGAVGMNATAMATQVAAASAIGNVSKAMKITNEAMNVQETTKILHEFQRENEKLEVKQEMMDDALMDA 162
BLAST of EWM28644.1 vs. NCBI_GenBank
Match: gi|1210511979|dbj|GAX28834.1| (charged multivesicular body protein 2B [Fistulifera solaris]) HSP 1 Score: 114.775 bits (286), Expect = 1.455e-28 Identity = 67/151 (44.37%), Postives = 100/151 (66.23%), Query Frame = 0 Query: 42 KKLTPKEQL----RETKKEIRHNERDMDRELQNLAREEAKLIHDIKKMA--ANNQHGP-LKVMAKNLVQLRAQKDKLITMKATMTGVGYKASLMHSQAAVGQAMSRMTGVMGDMNEMMDATKTSKVMTEFARQNEYMNVKEDLLDDALMDA 185 KK TPKE RET++E+R N+RD+DRE++ L R+E + ++K+ A A++ + P LK +AK +VQ+R Q++KL T KA + +G A++ SQ A AM +T M N+ MD KT+K+M EF R+NE + VKE+++DD LMDA Sbjct: 5 KKETPKEAAKNAKRETRREVRSNQRDLDREIRELDRQEKTITVELKQRAKTASSANDPTLKALAKQMVQVRQQRNKLHTAKAQVGAMGMHATVAASQIAAVTAMGSITESMKVANKQMDIKKTTKIMAEFQRENERIQVKEEMMDDVLMDA 155
BLAST of EWM28644.1 vs. NCBI_GenBank
Match: gi|241177517|ref|XP_002400072.1| (vacuolar assembly/sorting protein DID4, putative [Ixodes scapularis] >gi|215495242|gb|EEC04883.1| vacuolar assembly/sorting protein DID4, putative [Ixodes scapularis]) HSP 1 Score: 115.161 bits (287), Expect = 1.683e-28 Identity = 61/148 (41.22%), Postives = 98/148 (66.22%), Query Frame = 0 Query: 38 MFGQKKLTPKEQLRETKKEIRHNERDMDRELQNLAREEAKLIHDIKKMAANNQHGPLKVMAKNLVQLRAQKDKLITMKATMTGVGYKASLMHSQAAVGQAMSRMTGVMGDMNEMMDATKTSKVMTEFARQNEYMNVKEDLLDDALMDA 185 +FG+KK TP+E LR+ ++ + RD+DRE + ++E K+I DIKKMA +NQ +K+MA++LV+ R Q K I M+A + V K + SQ A+ QAM +T M +MN ++ + K+M EF +Q+E M++KE++++DA+ DA Sbjct: 4 LFGKKK-TPEEMLRQNQRALNKAMRDLDRERAKMEQQEKKIIMDIKKMAKDNQMDAVKIMARDLVRTRRQVKKFILMRANIQAVSLKIQTLRSQNAMAQAMKGVTRAMQNMNRQLNLPQIQKIMQEFEKQSEIMDMKEEMMNDAIDDA 150
BLAST of EWM28644.1 vs. NCBI_GenBank
Match: gi|1210517286|dbj|GAX23921.1| (charged multivesicular body protein 2B [Fistulifera solaris]) HSP 1 Score: 114.005 bits (284), Expect = 3.253e-28 Identity = 66/151 (43.71%), Postives = 101/151 (66.89%), Query Frame = 0 Query: 42 KKLTPKEQL----RETKKEIRHNERDMDRELQNLAREEAKLIHDIKKMA--ANNQHGP-LKVMAKNLVQLRAQKDKLITMKATMTGVGYKASLMHSQAAVGQAMSRMTGVMGDMNEMMDATKTSKVMTEFARQNEYMNVKEDLLDDALMDA 185 KK TPKE RET++E+R N+RD+DRE++ L R+E ++ ++K+ A A++ + P LK +AK +VQ+R Q++KL T KA + +G A++ SQ A AM +T M N+ MD KT+K+M +F R+NE + VKE+++DD LMDA Sbjct: 5 KKETPKEAAKKAKRETQREVRSNQRDLDREIRELDRQEKQVTLELKQRAKTASSANDPTLKALAKQMVQVRQQRNKLHTAKAQVGAMGMHATVAASQIAAVTAMGSITESMKVANQQMDIKKTTKIMADFQRENERIQVKEEMMDDVLMDA 155
BLAST of EWM28644.1 vs. NCBI_GenBank
Match: gi|1078810016|ref|XP_018496683.1| (PREDICTED: charged multivesicular body protein 2a isoform X1 [Galendromus occidentalis]) HSP 1 Score: 114.39 bits (285), Expect = 5.412e-28 Identity = 66/175 (37.71%), Postives = 103/175 (58.86%), Query Frame = 0 Query: 8 KCLRTCCGAKEAVNHSYFLQQRRTSRLIKAMFGQKKLTPKEQLRETKKEIRHNERDMDRELQNLAREEAKLIHDIKKMAANNQHGPLKVMAKNLVQLRAQKDKLITMKATMTGVGYKASLMHSQAAVGQAMSRMTGVMGDMNEMMDATKTSKVMTEFARQNEYMNVKEDLLDDAL 182 + LRT + H F Q ++ +FG++K TP+E LRE ++ + RD+DRE + ++E KLI DIKK A NQ +K+MA++LV+ R K + MKA + GV K + SQ A+ QAM +T MG+MN ++ + K+M EF +Q+ M+ KED+++DA+ Sbjct: 6 RPLRTTV-EYNPLTHGRFFQSE-----MEWLFGRRK-TPEEMLRENQRALNKAIRDLDRERTKMEQQEKKLIQDIKKQAKENQMESVKIMARDLVRTRRYIKKFLLMKANIQGVSLKIQTLRSQNAMAQAMRGVTRAMGNMNRQLNLPQIQKIMMEFEKQSMMMDAKEDMMNDAM 173 The following BLAST results are available for this feature:
BLAST of EWM28644.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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