EWM28644.1, cds2017 (CDS) Nannochloropsis gaditana

Overview
NameEWM28644.1
Unique Namecds2017
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:721555..721609 +
Alignment locationCM002458.1:722427..722800 +
Alignment locationCM002458.1:723201..723326 +
Alignment locationCM002458.1:723436..723447 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28644.1
Productcharged multivesicular body protein 2a
Orig transcript idgnl|cribi|Naga_100177g5.1001.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:721555..721609 +
CM002458.1supercontigCM002458.1:722427..722800 +
CM002458.1supercontigCM002458.1:723201..723326 +
CM002458.1supercontigCM002458.1:723436..723447 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0007034vacuolar transport
Vocabulary: Cellular Component
TermDefinition
GO:0005768endosome
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam
Homology
BLAST of EWM28644.1 vs. NCBI_GenBank
Match: gi|585111065|gb|EWM28644.1| (charged multivesicular body protein 2a [Nannochloropsis gaditana])

HSP 1 Score: 391.734 bits (1005), Expect = 5.393e-138
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0
Query:    1 MWPTVDCKCLRTCCGAKEAVNHSYFLQQRRTSRLIKAMFGQKKLTPKEQLRETKKEIRHNERDMDRELQNLAREEAKLIHDIKKMAANNQHGPLKVMAKNLVQLRAQKDKLITMKATMTGVGYKASLMHSQAAVGQAMSRMTGVMGDMNEMMDATKTSKVMTEFARQNEYMNVKEDLLDDALMDASRV 188
            MWPTVDCKCLRTCCGAKEAVNHSYFLQQRRTSRLIKAMFGQKKLTPKEQLRETKKEIRHNERDMDRELQNLAREEAKLIHDIKKMAANNQHGPLKVMAKNLVQLRAQKDKLITMKATMTGVGYKASLMHSQAAVGQAMSRMTGVMGDMNEMMDATKTSKVMTEFARQNEYMNVKEDLLDDALMDASRV
Sbjct:    1 MWPTVDCKCLRTCCGAKEAVNHSYFLQQRRTSRLIKAMFGQKKLTPKEQLRETKKEIRHNERDMDRELQNLAREEAKLIHDIKKMAANNQHGPLKVMAKNLVQLRAQKDKLITMKATMTGVGYKASLMHSQAAVGQAMSRMTGVMGDMNEMMDATKTSKVMTEFARQNEYMNVKEDLLDDALMDASRV 188          
BLAST of EWM28644.1 vs. NCBI_GenBank
Match: gi|1173932869|gb|OQR84767.1| (SNF7 family protein [Achlya hypogyna])

HSP 1 Score: 126.331 bits (316), Expect = 4.097e-33
Identity = 66/147 (44.90%), Postives = 94/147 (63.95%), Query Frame = 0
Query:   39 FGQKKLTPKEQLRETKKEIRHNERDMDRELQNLAREEAKLIHDIKKMAANNQHGPLKVMAKNLVQLRAQKDKLITMKATMTGVGYKASLMHSQAAVGQAMSRMTGVMGDMNEMMDATKTSKVMTEFARQNEYMNVKEDLLDDALMDA 185
            FG+ + TP+EQ RE K+EI H +RD++RE   L R+E  L+ DIK+ A +      K++AK LVQ+R QKDKL  MKA + G+  +AS M +Q  V   M + T  M   N+ MD  +  K + EF +Q+E MN+KE++LDD L+DA
Sbjct:    4 FGKPQKTPREQAREAKREIAHGQRDLEREKAALERQEKTLVLDIKRAAKDGNAAGTKILAKQLVQVRQQKDKLSVMKANLGGIAMQASTMAAQHVVMATMEKTTKTMVAANKQMDMGRIQKTLMEFEKQSEMMNMKEEMLDDTLIDA 150          
BLAST of EWM28644.1 vs. NCBI_GenBank
Match: gi|669152822|ref|XP_008611973.1| (hypothetical protein SDRG_07892 [Saprolegnia diclina VS20] >gi|530736325|gb|EQC34567.1| hypothetical protein SDRG_07892 [Saprolegnia diclina VS20])

HSP 1 Score: 121.324 bits (303), Expect = 3.709e-31
Identity = 63/151 (41.72%), Postives = 98/151 (64.90%), Query Frame = 0
Query:   38 MFG---QKKLTPKEQLRETKKEIRHNERDMDRELQNLAREEAKLIHDIKKMAANNQHGPLKVMAKNLVQLRAQKDKLITMKATMTGVGYKASLMHSQAAVGQAMSRMTGVMGDMNEMMDATKTSKVMTEFARQNEYMNVKEDLLDDALMDA 185
            MFG   + K T +EQ RE K+EI H +RD++RE   L R+E +L+ DIKK A +      K++AK LVQ+RAQK+KL+ MK ++ G+G +AS M +Q  +   M + T  M   N+ MD ++  K + EF +Q+E M++ ++++DD L+DA
Sbjct:    1 MFGFGKEPKKTAREQAREAKREIAHGQRDLEREKMTLERQEKQLVVDIKKAAKDGNQAGTKILAKQLVQIRAQKEKLMVMKVSLGGIGMQASAMAAQQTMVATMEKTTKTMVAANKQMDMSRIQKTLMEFEKQSELMSMGQEMIDDTLIDA 151          
BLAST of EWM28644.1 vs. NCBI_GenBank
Match: gi|1173933530|gb|OQR85223.1| (hypothetical protein THRCLA_10733 [Thraustotheca clavata])

HSP 1 Score: 120.168 bits (300), Expect = 1.003e-30
Identity = 66/150 (44.00%), Postives = 94/150 (62.67%), Query Frame = 0
Query:   38 MFG--QKKLTPKEQLRETKKEIRHNERDMDRELQNLAREEAKLIHDIKKMAANNQHGPLKVMAKNLVQLRAQKDKLITMKATMTGVGYKASLMHSQAAVGQAMSRMTGVMGDMNEMMDATKTSKVMTEFARQNEYMNVKEDLLDDALMDA 185
            MFG  + K T +EQ RE K+EI H +RD++RE   L R+E +LI DIKK A +      K++AK LVQ+R QKDKL  MK  + GV  +AS M +Q  +   M + T  M   N+ MD  +  K + E+ +QNE MN++E+++DD L+DA
Sbjct:    1 MFGFREPKKTAREQAREAKREIAHGQRDLEREKMALERQEKQLIVDIKKAAKDGNQAGTKILAKQLVQIRQQKDKLSLMKLNLNGVAMQASSMATQQLMVATMEKTTKTMVATNKQMDMNRFQKTLMEYEKQNEMMNIREEMIDDTLIDA 150          
BLAST of EWM28644.1 vs. NCBI_GenBank
Match: gi|813112379|ref|XP_012195266.1| (hypothetical protein SPRG_19070 [Saprolegnia parasitica CBS 223.65] >gi|641540450|gb|KDO34232.1| hypothetical protein SPRG_19070 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 119.783 bits (299), Expect = 1.947e-30
Identity = 64/151 (42.38%), Postives = 97/151 (64.24%), Query Frame = 0
Query:   38 MFGQKKLTPK---EQLRETKKEIRHNERDMDRELQNLAREEAKLIHDIKKMAANNQHGPLKVMAKNLVQLRAQKDKLITMKATMTGVGYKASLMHSQAAVGQAMSRMTGVMGDMNEMMDATKTSKVMTEFARQNEYMNVKEDLLDDALMDA 185
            MFG  K  PK   EQ RE K+EI H +RD++RE   L R+E +LI DIKK A +      K++AK LVQ+RAQK+KL+ MK ++ G+G +AS M +Q  +   M + T  M   N+ MD ++  K + EF +Q+E M++ +++++D L+DA
Sbjct:    1 MFGFGKAPPKTAREQAREAKREIAHGQRDLEREKMVLERQEKQLILDIKKAAKDGNQAGTKILAKQLVQVRAQKEKLMVMKVSLGGIGMQASAMAAQQTMVATMEKTTKTMVAANKQMDMSRIQKTLMEFEKQSELMSMGQEMMEDTLIDA 151          
BLAST of EWM28644.1 vs. NCBI_GenBank
Match: gi|1072226045|gb|OEU10789.1| (Snf7-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 119.013 bits (297), Expect = 6.452e-30
Identity = 64/154 (41.56%), Postives = 104/154 (67.53%), Query Frame = 0
Query:   39 FGQKKLTPKEQL----RETKKEIRHNERDMDRELQNLAREEAKLIHDIK---KMAANNQHGPLKVMAKNLVQLRAQKDKLITMKATMTGVGYKASLMHSQAAVGQAMSRMTGVMGDMNEMMDATKTSKVMTEFARQNEYMNVKEDLLDDALMDA 185
            F +KK TPKE      RETKKE+R ++R+MDREL+ L R+E+++  ++K   K+ ++++   L  +AK LVQ+R Q++K++T KA +  VG  A+ M +Q A   A+  ++  M   NE M+  +T+K++ EF R+NE + VK++++DDALMDA
Sbjct:   10 FAEKK-TPKELAKEAKRETKKEVRSSQREMDRELRELDRQESQITKELKQRAKLTSSSKDPALAALAKQLVQIRKQREKIMTAKAHIGAVGMNATAMATQVAAASAIGNVSKAMKITNEAMNVQETTKILHEFQRENEKLEVKQEMMDDALMDA 162          
BLAST of EWM28644.1 vs. NCBI_GenBank
Match: gi|1210511979|dbj|GAX28834.1| (charged multivesicular body protein 2B [Fistulifera solaris])

HSP 1 Score: 114.775 bits (286), Expect = 1.455e-28
Identity = 67/151 (44.37%), Postives = 100/151 (66.23%), Query Frame = 0
Query:   42 KKLTPKEQL----RETKKEIRHNERDMDRELQNLAREEAKLIHDIKKMA--ANNQHGP-LKVMAKNLVQLRAQKDKLITMKATMTGVGYKASLMHSQAAVGQAMSRMTGVMGDMNEMMDATKTSKVMTEFARQNEYMNVKEDLLDDALMDA 185
            KK TPKE      RET++E+R N+RD+DRE++ L R+E  +  ++K+ A  A++ + P LK +AK +VQ+R Q++KL T KA +  +G  A++  SQ A   AM  +T  M   N+ MD  KT+K+M EF R+NE + VKE+++DD LMDA
Sbjct:    5 KKETPKEAAKNAKRETRREVRSNQRDLDREIRELDRQEKTITVELKQRAKTASSANDPTLKALAKQMVQVRQQRNKLHTAKAQVGAMGMHATVAASQIAAVTAMGSITESMKVANKQMDIKKTTKIMAEFQRENERIQVKEEMMDDVLMDA 155          
BLAST of EWM28644.1 vs. NCBI_GenBank
Match: gi|241177517|ref|XP_002400072.1| (vacuolar assembly/sorting protein DID4, putative [Ixodes scapularis] >gi|215495242|gb|EEC04883.1| vacuolar assembly/sorting protein DID4, putative [Ixodes scapularis])

HSP 1 Score: 115.161 bits (287), Expect = 1.683e-28
Identity = 61/148 (41.22%), Postives = 98/148 (66.22%), Query Frame = 0
Query:   38 MFGQKKLTPKEQLRETKKEIRHNERDMDRELQNLAREEAKLIHDIKKMAANNQHGPLKVMAKNLVQLRAQKDKLITMKATMTGVGYKASLMHSQAAVGQAMSRMTGVMGDMNEMMDATKTSKVMTEFARQNEYMNVKEDLLDDALMDA 185
            +FG+KK TP+E LR+ ++ +    RD+DRE   + ++E K+I DIKKMA +NQ   +K+MA++LV+ R Q  K I M+A +  V  K   + SQ A+ QAM  +T  M +MN  ++  +  K+M EF +Q+E M++KE++++DA+ DA
Sbjct:    4 LFGKKK-TPEEMLRQNQRALNKAMRDLDRERAKMEQQEKKIIMDIKKMAKDNQMDAVKIMARDLVRTRRQVKKFILMRANIQAVSLKIQTLRSQNAMAQAMKGVTRAMQNMNRQLNLPQIQKIMQEFEKQSEIMDMKEEMMNDAIDDA 150          
BLAST of EWM28644.1 vs. NCBI_GenBank
Match: gi|1210517286|dbj|GAX23921.1| (charged multivesicular body protein 2B [Fistulifera solaris])

HSP 1 Score: 114.005 bits (284), Expect = 3.253e-28
Identity = 66/151 (43.71%), Postives = 101/151 (66.89%), Query Frame = 0
Query:   42 KKLTPKEQL----RETKKEIRHNERDMDRELQNLAREEAKLIHDIKKMA--ANNQHGP-LKVMAKNLVQLRAQKDKLITMKATMTGVGYKASLMHSQAAVGQAMSRMTGVMGDMNEMMDATKTSKVMTEFARQNEYMNVKEDLLDDALMDA 185
            KK TPKE      RET++E+R N+RD+DRE++ L R+E ++  ++K+ A  A++ + P LK +AK +VQ+R Q++KL T KA +  +G  A++  SQ A   AM  +T  M   N+ MD  KT+K+M +F R+NE + VKE+++DD LMDA
Sbjct:    5 KKETPKEAAKKAKRETQREVRSNQRDLDREIRELDRQEKQVTLELKQRAKTASSANDPTLKALAKQMVQVRQQRNKLHTAKAQVGAMGMHATVAASQIAAVTAMGSITESMKVANQQMDIKKTTKIMADFQRENERIQVKEEMMDDVLMDA 155          
BLAST of EWM28644.1 vs. NCBI_GenBank
Match: gi|1078810016|ref|XP_018496683.1| (PREDICTED: charged multivesicular body protein 2a isoform X1 [Galendromus occidentalis])

HSP 1 Score: 114.39 bits (285), Expect = 5.412e-28
Identity = 66/175 (37.71%), Postives = 103/175 (58.86%), Query Frame = 0
Query:    8 KCLRTCCGAKEAVNHSYFLQQRRTSRLIKAMFGQKKLTPKEQLRETKKEIRHNERDMDRELQNLAREEAKLIHDIKKMAANNQHGPLKVMAKNLVQLRAQKDKLITMKATMTGVGYKASLMHSQAAVGQAMSRMTGVMGDMNEMMDATKTSKVMTEFARQNEYMNVKEDLLDDAL 182
            + LRT       + H  F Q       ++ +FG++K TP+E LRE ++ +    RD+DRE   + ++E KLI DIKK A  NQ   +K+MA++LV+ R    K + MKA + GV  K   + SQ A+ QAM  +T  MG+MN  ++  +  K+M EF +Q+  M+ KED+++DA+
Sbjct:    6 RPLRTTV-EYNPLTHGRFFQSE-----MEWLFGRRK-TPEEMLRENQRALNKAIRDLDRERTKMEQQEKKLIQDIKKQAKENQMESVKIMARDLVRTRRYIKKFLLMKANIQGVSLKIQTLRSQNAMAQAMRGVTRAMGNMNRQLNLPQIQKIMMEFEKQSMMMDAKEDMMNDAM 173          
The following BLAST results are available for this feature:
BLAST of EWM28644.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111065|gb|EWM28644.1|5.393e-138100.00charged multivesicular body protein 2a [Nannochlor... [more]
gi|1173932869|gb|OQR84767.1|4.097e-3344.90SNF7 family protein [Achlya hypogyna][more]
gi|669152822|ref|XP_008611973.1|3.709e-3141.72hypothetical protein SDRG_07892 [Saprolegnia dicli... [more]
gi|1173933530|gb|OQR85223.1|1.003e-3044.00hypothetical protein THRCLA_10733 [Thraustotheca c... [more]
gi|813112379|ref|XP_012195266.1|1.947e-3042.38hypothetical protein SPRG_19070 [Saprolegnia paras... [more]
gi|1072226045|gb|OEU10789.1|6.452e-3041.56Snf7-domain-containing protein [Fragilariopsis cyl... [more]
gi|1210511979|dbj|GAX28834.1|1.455e-2844.37charged multivesicular body protein 2B [Fistulifer... [more]
gi|241177517|ref|XP_002400072.1|1.683e-2841.22vacuolar assembly/sorting protein DID4, putative [... [more]
gi|1210517286|dbj|GAX23921.1|3.253e-2843.71charged multivesicular body protein 2B [Fistulifer... [more]
gi|1078810016|ref|XP_018496683.1|5.412e-2837.71PREDICTED: charged multivesicular body protein 2a ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2025rna2025Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications