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Properties
| Property Name | Value |
|---|
| Product | uncharacterized protein |
| Orig transcript id | gnl|cribi|Naga_100002g170.4852.mrna |
| Orig protein id | gnl|cribi|Naga_100002g170.4852 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 5; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:307788..309097 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1858 ID=rna1858|Name=rna1858|organism=Nannochloropsis gaditana|type=mRNA|length=2322bp
CCACATCTTTGACGTAATTGCATGCGCCCCCGAACAAGTGCTGGTACGCC
TACAATCTACATTTACATCCATCTCCTCCGGCTTGTCCCCAAGTCTTTGA
AATCTTTTTCGATCGCTTTCTGACTGCAATGGCTTGCAGTGTATAGGTCC
CAGTACAGAAGAGTCGAAAGGCTCTCCCGGATACACGGTTAGGACTGTTA
TAATGATGAGGCCGATGGCCACGCCAGCCTATTTCAAACATAAGGCGTGT
TTGAGGATAAGGACTGCTAAGGGATGCCATTTTTAAAAAGATGGCTCAGA
AGAGCAAATTTTCTTACCAGTACAAAGCCTAGCAGCTCGTGAGTGCGCGG
ATGTTGCGTGATATACTCGCAGGACGGGAAGTCGAAATTGAAGAGGGGCG
GAACATTACGGGTCATGTTGATAAAGTGAGTCGGCGCTCTTAAAAGAGAG
TGCGCAGGAGCGAACGTGGCTTCGACCGTTGTAGGCGTTCTGTCAGTTCT
TATGTCAATGATGACGGGTATGCCTGTATATAAGAACCAGGCAGGCGAGC
TTTTCATTGGTCAGGTTATACTATTCGTCCTTTCTTTTCGCCTTATGAGC
CGTCGTTCGCCAAGCGAGCGAACGAGCAGCGGCCCTCTCGCCAACCAACG
TGACCTGAAATCCAAAAACCTTACACTTAATGAATAGACACGCTTCGGAC
ACAGGTATCCGAGGAGTGGCTGGCCCGACTTGGGAGGACTCCGTGGCAGC
GACTTCACTTTAGCTTGTTGGTAGGGTCGGCATCTCTAAGGGATATCTTC
ACCTCCCCGCGGCCTCGTCCTGTGCTTTTCGATGGCAGACGATGGGAAAA
CTGTCGGAGACCATGTCTTGGTCATCCTCTTCCTGCTTCTTGTGTTGCTC
GTGGGCTGGACATACTGGTTTCGTTCTCGTCCCCGCACATCCGAAGTGGA
CTTCGAGAGAGAAGGCGATCAAAAGACGAGAATAAGACATGAACGAAATA
TTTAAGCTCCGACCGCACAACGAGACAAAAGTATTTAACAATGCTGAAAT
GTGAATCGAAGCAAGGAGAGACGCAGGGGTGAGAATAGATGGTTTAACAA
AGGTGAAGTCCGATGGATCGCAGGGTGAAATGGAATTGTGCCAAAGGCCG
TGCTTATGGAGGGAGACATGAAAGGATGAGGTGGTTACCAACTCCCTTGG
GTTTTGTCCCCGTTGCATAAGCCGTGAGAGAAGTTGTTGTGCAGCTTGCA
GTGTGTCTTTTTTCATTTTGAGTCTAGGGGTATGGAATATGCATCGACTA
GAGAACGTTGGGTTCCTACTGTCATATTTTTCAACTTCTTTTCCTCTCTC
GTCTTCATAGAACGGTATAAATATGAAAGGACTGGGTTCTTTGAAGACAA
ATGTTGAAAAAGAAGGACTTGCAATTTGTCCCTGTGCATCATTTGGTTCT
ATGGAAGAGAGCGAATGGAGAGCACGGCAGGACTTCGAATGTTTCTCGAG
AGTACTCTTTCTCCGTGTCGAAACCCACAGATCCTTCACTCCACACGGCA
TTCCCTTCCTTCTTCTTTCACAGGCTGTCATTCACATTTATGGAAACGGC
AATAAGGATCGAAGGAGCGTCTAGGTCTTCAAAATTTCAAGATGGGCTTG
CGCTTTACTCCCGCCTCGAGCCTTGTCTCTACCCCTCTTTGAACCCCGCC
CTCGTCTTGGGGCACGACATTTCGCACCACTGTCCTTCCCTCATGTATGG
AGAGCTGAGCGGAGAGACTCTGGTAAAAGCCTTAGGCCTGATTGATGAGT
TAGAAGCCCTACCGAGAGAGGGGGAAGGCTCGCTTATTGACATTGGTTCG
GGAATTGGGAAGCAGATATTCACGGCAGCATGTGTATACGCCTGGAAGCG
GTGCATTGGGGTGGAAATCTATGAGAAACGCGCAAAACTTGCAGAACAGG
CATTGCAAAGATGGAAAAGTAAACAGAGTAGTATACCCATGCTGCGTACC
CGAGTGGTCGACTTCGCTTGCGATGACATTGTCGAAATCGAGATGGAGGG
ATTCCAAGTCATCCTCCTCGTGTCGGCAGCATTTACCGATACGCTGATGC
GGAGCATAGCGAAGGTTCTGGATTCACAAGCGGTCGGGACTTTGGCCATA
TGTATCACAAAAGCTCTCCCTGGGCCAAAGTGGGAAGTGGTGCACAAATC
TGAGCGCGAAGAGCCCTGGGGACGGGCATGGTTAATTATTCAAAAGAAAA
TACTTGCGTGATAAATAACGATTTGGCCGTGCGGGTGCTCACAAAGTCGC
TTAACAAATGCAATAAGTCCCG back to topprotein sequence of rna1858 >rna1858-protein ID=rna1858-protein|Name=rna1858|organism=Nannochloropsis gaditana|type=polypeptide|length=223bp
METAIRIEGASRSSKFQDGLALYSRLEPCLYPSLNPALVLGHDISHHCPS
LMYGELSGETLVKALGLIDELEALPREGEGSLIDIGSGIGKQIFTAACVY
AWKRCIGVEIYEKRAKLAEQALQRWKSKQSSIPMLRTRVVDFACDDIVEI
EMEGFQVILLVSAAFTDTLMRSIAKVLDSQAVGTLAICITKALPGPKWEV
VHKSEREEPWGRAWLIIQKKILA back to topmRNA from alignment at CM002458.1:307788..309097- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna1858 ID=rna1858|Name=rna1858|organism=Nannochloropsis gaditana|type=mRNA|length=1310bp|location=Sequence derived from alignment at CM002458.1:307788..309097- (Nannochloropsis gaditana)
AAACATACATGCGACATGGACCTTCTCGAAATATTTGTGTGATGACGTCG
GATTGGAATAAATTGATATATAGGCATTCAATGGCAACCGATGTACAATC
GAAACAATCCTATAATCACAGAATTGTGCCAAAGGCCGTGCTTATGGAGG
GAGACATGAAAGGATGAGGTGGTTACCAACTCCCTTGGGTTTTGTCCCCG
TTGCATAAGCCGTGAGAGAAGTTGTTGTGCAGCTTGCAGTGTGTCTTTTT
TCATTTTGAGTCTAGGGGTATGGAATATGCATCGACTAGAGAACGTTGGG
TTCCTACTGTCATATTTTTCAACTTCTTTTCCTCTCTCGTCTTCATAGAA
CGGTATAAATATGAAAGGACTGGGTTCTTTGAAGACAAATGTTGAAAAAG
AAGGACTTGCAATTTGTCCCTGTGCATCATTTGGTTCTATGGAAGAGAGC
GAATGGAGAGCACGGCAGGACTTCGAATGTTTCTCGAGAGTACTCTTTCT
CCGTGTCGAAACCCACAGATCCTTCACTCCACACGGCATTCCCTTCCTTC
TTCTTTCACAGGCTGTCATTCACATTTATGGAAACGGCAATAAGGATCGA
AGGAGCGTCTAGGTCTTCAAAATTTCAAGATGGGCTTGCGCTTTACTCCC
GCCTCGAGCCTTGTCTCTACCCCTCTTTGAACCCCGCCCTCGTCTTGGGG
CACGACATTTCGCACCACTGTCCTTCCCTCATGTATGGAGAGCTGAGCGG
AGAGACTCTGGTAAAAGCCTTAGGCCTGATTGATGAGTTAGAAGCCCTAC
CGAGAGAGGGGGAAGGCTCGCTTATTGACATTGGTTCGGGAATTGGGAAG
CAGATATTCACGGCAGCATGTGTATACGCCTGGAAGCGGTGCATTGGGGT
GGAAATCTATGAGAAACGCGCAAAACTTGCAGAACAGGCATTGCAAAGAT
GGAAAAGTAAACAGAGTAGTATACCCATGCTGCGTACCCGAGTGGTCGAC
TTCGCTTGCGATGACATTGTCGAAATCGAGATGGAGGGATTCCAAGTCAT
CCTCCTCGTGTCGGCAGCATTTACCGATACGCTGATGCGGAGCATAGCGA
AGGTTCTGGATTCACAAGCGGTCGGGACTTTGGCCATATGTATCACAAAA
GCTCTCCCTGGGCCAAAGTGGGAAGTGGTGCACAAATCTGAGCGCGAAGA
GCCCTGGGGACGGGCATGGTTAATTATTCAAAAGAAAATACTTGCGTGAT
AAATAACGATTTGGCCGTGCGGGTGCTCACAAAGTCGCTTAACAAATGCA
ATAAGTCCCG back to topCoding sequence (CDS) from alignment at CM002458.1:307788..309097- >rna1858 ID=rna1858|Name=rna1858|organism=Nannochloropsis gaditana|type=CDS|length=672bp|location=Sequence derived from alignment at CM002458.1:307788..309097- (Nannochloropsis gaditana)
ATGGAAACGGCAATAAGGATCGAAGGAGCGTCTAGGTCTTCAAAATTTCA
AGATGGGCTTGCGCTTTACTCCCGCCTCGAGCCTTGTCTCTACCCCTCTT
TGAACCCCGCCCTCGTCTTGGGGCACGACATTTCGCACCACTGTCCTTCC
CTCATGTATGGAGAGCTGAGCGGAGAGACTCTGGTAAAAGCCTTAGGCCT
GATTGATGAGTTAGAAGCCCTACCGAGAGAGGGGGAAGGCTCGCTTATTG
ACATTGGTTCGGGAATTGGGAAGCAGATATTCACGGCAGCATGTGTATAC
GCCTGGAAGCGGTGCATTGGGGTGGAAATCTATGAGAAACGCGCAAAACT
TGCAGAACAGGCATTGCAAAGATGGAAAAGTAAACAGAGTAGTATACCCA
TGCTGCGTACCCGAGTGGTCGACTTCGCTTGCGATGACATTGTCGAAATC
GAGATGGAGGGATTCCAAGTCATCCTCCTCGTGTCGGCAGCATTTACCGA
TACGCTGATGCGGAGCATAGCGAAGGTTCTGGATTCACAAGCGGTCGGGA
CTTTGGCCATATGTATCACAAAAGCTCTCCCTGGGCCAAAGTGGGAAGTG
GTGCACAAATCTGAGCGCGAAGAGCCCTGGGGACGGGCATGGTTAATTAT
TCAAAAGAAAATACTTGCGTGA back to top
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