rna1383, rna1383 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1383
Unique Name	rna1383
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	960
Alignment location	CM002457.1:496268..499402 +

Link to JBrowse

Properties


Property Name	Value
Product	gc-rich sequence dna-binding factor 1
Orig transcript id	gnl\|cribi\|Naga_100029g40.9534.mrna
Orig protein id	gnl\|cribi\|Naga_100029g40.9534
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:496268..499402 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100029g40	gene1337	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1383	rna1383-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29277.1	cds1381	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:496268..499402+
coding sequence from alignment at CM002457.1:496268..499402+

mRNA sequence

>rna1383 ID=rna1383|Name=rna1383|organism=Nannochloropsis gaditana|type=mRNA|length=960bp
ATGGAGGGCCGGGAGCCTTGCCCTTACCGCATTGTGGACGATGTTGGCGG
CGCGTTTTGCATGGGATCTATAGGAGGAGGGATCTGGCATTACTTCAAGG
GAGTGCGAAATGCCCCTAAAGGGGAGAGGCTGCGAGGTGGCATTTCATCT
GTCAAAGCCAGGGCGCCGCTAGTAGGAGGTGCTTTCGCCGTCTGGGGTCT
ATGTTTCGCTAGCTTTGATTGTAGCATAGCAGCGATACGGAAAAAGGAGG
ATCCATGGAACGCCATCTTGTCCGGTGCATGCACAGGAGGGCTGCTGGCA
ATACGAGCAGGCCCAAAAGCGGCCGGCAAGAACGCGGTCATCGGGGGTTT
AGTGCTCGCTATGATTGAAGGGGCATCCATCGCCATTACCAAGTTTTTCG
CGCCCTCAGCCTCGACACCGGAGATGGGGGCCCCGGCATTGCCCGACCCT
ACTCTACCGCCCACGGGACCTGGGATGCTTTCGAGTTTTGGCGGGAGTTC
TTTCGGTGGAGTGGAGGAGAGCGGGTCCGCAAACCCCTCCTACGCGGACG
ACCCCTCCGCGCCCGGCACAGGGGGAGGATTTGACACGGGTGGCGATTTC
TTGTCGCCGGCTTTGGGCGCAAGTGAGGTGAATGTACTGGTACAGCGTGA
TCCAATTCAAAGGCAAGGTCGGTCGGTTAGGATAAGTTTTGAGCTCGAGA
AGCATAGAGGGCTAGAGTGTGACGGCCCTGTGAATCTATTAAATATGGGC
GGATGGATGGAGCGTTGTGGCTTCGACTCACAAGAGAGACCAGGAAGCAG
GACAAGGAGGGATGTGGGCTATAGATGTCCATTGTGGACGCCGAGGCACT
TCACTCCAAAGAAATCGAGCGAAGAGGGGAAAAGGTTCCATGCCTATTGC
GTGAGAAAGCCTTGCAAGGATCAAAGAAAAGTCCGCTTTCACAACTTGCA
ATGCCTATGA

protein sequence of rna1383

>rna1383-protein ID=rna1383-protein|Name=rna1383|organism=Nannochloropsis gaditana|type=polypeptide|length=651bp
MNGIGNMNAELASRDSLAPQGAARRLDAISEADPRIDKDWESEVIRRGVR
TGRGETSDGRSMALEGRGARDLSLTASLSSMALPSKGLKDSEFKSVETVL
ADMRSVQSRLEESHDRNSRTAEKTRSEVASVKDGLEKMQKEFGGTAARFE
YFQDVRIFLSSLCGCLREKEAMVRELEAAMAQLWREGYERRMSRRVQDQE
DALEEALETDGKEQQSSQAGMLLSLQGYAPEVVIALKESLSKGAGVPGPA
HHDLDEFGRDASGKMSKDRRRRERRGRLASVLERINDGTGGDKAEAEATF
SGAEESDSEVETLRTRQAKLLEAAGVIFEDVADEFKALDAVVQRFEDWKR
KFPKDYHTAYVPIALPQVLEPYVRVEMVTWNPLGPVRSMEDGDGAGGKDV
GGAAIEAFPWFERLFEYGQFQEEGSAPKQEGEDPDDRLVPQLVEKVAVSR
LEGLLNECYDPFSERETQRAISAIQGLLIYEPGKHALESLLRAPFSRLEK
AITKLCLPLLGPEAGISLWEFQRRQIFVALKLFRNVCFWHQVLAPRPLAS
LVLGVLLDGKLASALENRLDNTGRGILSKSKTVLEVIGTLEALMIATPPA
LVVRGDGVRLLGMGRLLDKLETRELAGPLSSTVKRVRLGFGNAIKTTQKV
K

mRNA from alignment at CM002457.1:496268..499402+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1383 ID=rna1383|Name=rna1383|organism=Nannochloropsis gaditana|type=mRNA|length=3135bp|location=Sequence derived from alignment at CM002457.1:496268..499402+ (Nannochloropsis gaditana)
TCCTCCAGCCCACCTGTCGGCAAGCGTTGCTGCCCTCTAGCCCAAAGAGG
GAGTCTGTGAGCCATTAAAGCTCCAGTTGCGTGCATCATGGCAGGCTTTT
TCTGGCGAGGCACAACTCACCTTGGTGCACCTCATGAGCCATTTAGAGCA
CATATCAGCAGGGAATTGTAGGCTACTCAGATTTTTACTATGGCTAAATG
GCTTTGATACTGCACAGATGAAGGCGTCCGCATTCCTCAGCTTTGCTGAC
GATGttgaagacgacgaggatgggAACAGTGGTGGATTGAAAACtttgaa
aagcaagaaaaagaacaagAAGGCCTTTGCCAGCAAGAAATCATTGCAGA
GGGCACTCGAAGAGCACTTGGATGAGAAGGCCGCCGTAGATGGGATTGCG
AGCGCAAATCAAGCTGGAGGAGTTTCTTACtcaggtggtgggggtgaaTA
TAGCAAGGAGAAACTCGCGGAGTTGAAAAAGGTGCAAAATTTCCAGGTTA
GCATTAAGGCCTCTCGGACGACAGAGGCAAAAGCACGGGTAGCGTTTGAG
GTGCCTGAAGACACGGatggcgagaaagaggacgccgAGGGTGTGGACAC
GGAAGATTATGATGTCCACAGCGCACAATTGGAGCAattgaagaaaggaa
agcggagaagagggatgTTGGGCTCTGGGAATGGGCttggagcggaggag
ggcatggactTCATTTCGCTGGAGGCGAGTGGGGAAGGCGGTACTATGAG
CTGGAGTGGCAAGGTAAGACATGGGTACAGAGAGTAAGTACCAGCATTTG
GGGAGTTGCGGGTCAGGGGCGGCTGAATGATTACAACAAACCATCATTTC
CGGACGGGCATCCTTATACATGTTCAAAAAGTTTGCCGCATGTGGCGCCT
AGAGATTTCTGCCTGACAGCACCCACTGCCTCTTCTATTGATTTGAATGA
ATGGCATTGGAAATATGAACGCTGAGCTTGCTTCACGGGACTCCCTGGCA
CCACAGGGAgccgcgaggaggctggACGCGATCAGTGAGGCGGACCCGCG
TATCGACAAGGACTGGGAGAGCGAGGTGATACGCCGCGGGGTCAGGACAG
GGCGAGGCGAGACGAGCGACGGTAGAAGCATGGCTTTAGAGGGCAGGGGA
GCGAGAGACCTGAGTTTGACTGCGTCCTTGAGGTAAGCGATGCATGGGTG
ACGTGGATGGCGAGGGTTGTGAGACTCGCGGAGCCGACTTCTTCACTCGG
ACGCTTGCtcgacctcctgccccgtACACCACAGCAGCATGGCTTTGCCA
TCGAAGGGGCTGAAGGACTCTGAGTTCAAGAGCGTGGAGACGGTCTTGGC
GGACATGCGGTCAGTCCAGAGCCgcctggaggagagccaCGACCGAAACT
CACGGACCGCTGAGAAGACGCGGAGCGAGGTGGCCTCGGTCAAGGACGGA
CTGGAAAAGATGCAAAAAGAATTCGGCGGCACGGCGGCCAGGTTCGAGTA
TTTTCAGGACGTGCGTATCTTTTTGTCCAGCCTCTGCGGCTGCCtcagag
agaaggaagcgatggtCAGGGAACTAGAGGCCGCCATGGCGCAACTGTGG
AGAGAAGGATACGAGCGGCGAATGAGTAGGAGAGTGCAAGACCAGGAAGA
TGCATTGGAGGAGGCTCTTGAGACGGATGGAAAGGAACAGCAGTCTTCCC
AGGCGGGAATGCTGCTGTCTCTGCAGGGGTACGCCCCGGAGGTGGTCATC
GCCCTGAAAGAGAGCTTGAGCAAGGGAGCAGGTGTGCCTGGCCCAGCGCA
TCACGACCTGGACGAGTTTGGGAGGGATGCAAGCGGCAAAATGAGCAAGG
ACAGGCGACGGAGGGAACGGCGGGGCCGCCTGGCAAGCGTGCTCGAGAGG
ATCAATGACGGCACGGGCGGCGACAAGGCTGAAGCGGAGGCGACTTTCAG
CGGCGCCGAGGAAAGTGATTCGGAGGTTGAAACGTTGCGCACTAGGCAGG
CCAAGTTGCTGGAGGCAGCTGGGGTGATCTTTGAGGACGTAGCGGACGAA
TTCAAAGCCCTGGACGCCGTGGTTCAACGCTTTGAGGATTGGAAACGCAA
GTTCCCCAAGGACTATCACACCGCCTATGTCCCCATAGCCTTGCCTCAAG
TACTAGAACCTTACGTACGCGTTGAAATGGTGACCTGGAATCCGCTTGGG
CCAGTGCGTTCGAtggaggatggggatggggcgggcgggaaggatgTCGG
GGGGGCTGCGATCGAGGCCTTCCCCTGGTTTGAGCGCCTGTTTGAGTACG
GACAGtttcaggaggaaggatcggCGCCtaagcaagaaggagaagatccA
GACGACCGTCTAGTGCCACAACTCGTAGAAAAGGTAGCCGTGAGTCGATT
AGAGGGCCTTCTCAATGAGTGCTACGATCCTTTTTCGGAAAGAGAGACAC
AGCGAGCAATATCAGCAATACAGGGATTACTCATCTACGAGCCAGGAAAG
CATGCTCTGGAGTCTCTACTTCGAGCACCCTTTTCTCGCTTAGAGAAAGC
CATCACCAAGCTGTGCTTGCCTTTACTTGGACCCGAGGCGGGAATTTCAC
TATGGGAGTTCCAGCGGCGACAAATATTTGTCGCATTGAAGCTCTTTCGC
AACGTCTGCTTTTGGCACCAAGTTTTGGCTCCACGTCCCCTTGCTTCGCT
AGTCTTGGGTGTTTTACTAGACGGGAAACTCGCATCAGCGCTTGAAAACC
GTTTGGACAACACGGGCCGTGGAATCCTGTCAAAATCGAAAACTGTGCTT
GAAGTAATCGGCACCCTTGAGGCCTTGATGATCGCAactcccccggccct
cgtAGTGAGGGGAGATGGTGTAAGGCTGCTAGGTATGGGGAGGCTGCTCG
ACAAGCTTGAAACGCGTGAACTTGCGGGGCCTTTGTCCTCAACAGTAAAA
CGGGTACGGTTGGGGTTTGGAAATGCGATCAAGACCACACAAAAAGTAAA
ATAAAGTTTGTAAATAAATTCATGAAATATCCGGTGGCACAAAAATGATC
AAAGATATCTTTAAAAAATACTTGTGTTATTTGAATTATTCACGAAATGA
CGTCAAATCTGCTACTAAAAGCACGCAGCATTTCA

Coding sequence (CDS) from alignment at CM002457.1:496268..499402+

>rna1383 ID=rna1383|Name=rna1383|organism=Nannochloropsis gaditana|type=CDS|length=3912bp|location=Sequence derived from alignment at CM002457.1:496268..499402+ (Nannochloropsis gaditana)
ATGAATGGCATTGGAAATATGAACGCTGAGCTTGCTTCACGGGACTCCCT
GGCACCACAGGGAgccgcgaggaggctggACGCGATCAGTGAGGCGGACC
CGCGTATCGACAAGGACTGGGAGAGCGAGGTGATACGCCGCGGGGTCAGG
ACAGGGCGAGGCGAGACGAGCGACGGTAGAAGCATGGCTTTAGAGGGCAG
GGGAGCGAGAGACCTGAGTTTGACTGCGTCCTTGAGCAGCATGGCTTTGC
CATCGAAGGGGCTGAAGGACTCTGAGTTCAAGAGCGTGGAGACGGTCTTG
GCGGACATGCGGTCAGTCCAGAGCCgcctggaggagagccaCGACCGAAA
CTCACGGACCGCTGAGAAGACGCGGAGCGAGGTGGCCTCGGTCAAGGACG
GACTGGAAAAGATGCAAAAAGAATTCGGCGGCACGGCGGCCAGGTTCGAG
TATTTTCAGGACGTGCGTATCTTTTTGTCCAGCCTCTGCGGCTGCCtcag
agagaaggaagcgatggtCAGGGAACTAGAGGCCGCCATGGCGCAACTGT
GGAGAGAAGGATACGAGCGGCGAATGAGTAGGAGAGTGCAAGACCAGGAA
GATGCATTGGAGGAGGCTCTTGAGACGGATGGAAAGGAACAGCAGTCTTC
CCAGGCGGGAATGCTGCTGTCTCTGCAGGGGTACGCCCCGGAGGTGGTCA
TCGCCCTGAAAGAGAGCTTGAGCAAGGGAGCAGGTGTGCCTGGCCCAGCG
CATCACGACCTGGACGAGTTTGGGAGGGATGCAAGCGGCAAAATGAGCAA
GGACAGGCGACGGAGGGAACGGCGGGGCCGCCTGGCAAGCGTGCTCGAGA
GGATCAATGACGGCACGGGCGGCGACAAGGCTGAAGCGGAGGCGACTTTC
AGCGGCGCCGAGGAAAGTGATTCGGAGGTTGAAACGTTGCGCACTAGGCA
GGCCAAGTTGCTGGAGGCAGCTGGGGTGATCTTTGAGGACGTAGCGGACG
AATTCAAAGCCCTGGACGCCGTGGTTCAACGCTTTGAGGATTGGAAACGC
AAGTTCCCCAAGGACTATCACACCGCCTATGTCCCCATAGCCTTGCCTCA
AGTACTAGAACCTTACGTACGCGTTGAAATGGTGACCTGGAATCCGCTTG
GGCCAGTGCGTTCGAtggaggatggggatggggcgggcgggaaggatgTC
GGGGGGGCTGCGATCGAGGCCTTCCCCTGGTTTGAGCGCCTGTTTGAGTA
CGGACAGtttcaggaggaaggatcggCGCCtaagcaagaaggagaagatc
cAGACGACCGTCTAGTGCCACAACTCGTAGAAAAGGTAGCCGTGAGTCGA
TTAGAGGGCCTTCTCAATGAGTGCTACGATCCTTTTTCGGAAAGAGAGAC
ACAGCGAGCAATATCAGCAATACAGGGATTACTCATCTACGAGCCAGGAA
AGCATGCTCTGGAGTCTCTACTTCGAGCACCCTTTTCTCGCTTAGAGAAA
GCCATCACCAAGCTGTGCTTGCCTTTACTTGGACCCGAGGCGGGAATTTC
ACTATGGGAGTTCCAGCGGCGACAAATATTTGTCGCATTGAAGCTCTTTC
GCAACGTCTGCTTTTGGCACCAAGTTTTGGCTCCACGTCCCCTTGCTTCG
CTAGTCTTGGGTGTTTTACTAGACGGGAAACTCGCATCAGCGCTTGAAAA
CCGTTTGGACAACACGGGCCGTGGAATCCTGTCAAAATCGAAAACTGTGC
TTGAAGTAATCGGCACCCTTGAGGCCTTGATGATCGCAactcccccggcc
ctcgtAGTGAGGGGAGATGGTGTAAGGCTGCTAGGTATGGGGAGGCTGCT
CGACAAGCTTGAAACGCGTGAACTTGCGGGGCCTTTGTCCTCAACAGTAA
AACGGGTACGGTTGGGGTTTGGAAATGCGATCAAGACCACACAAAAAGTA
AAATAAATGAATGGCATTGGAAATATGAACGCTGAGCTTGCTTCACGGGA
CTCCCTGGCACCACAGGGAgccgcgaggaggctggACGCGATCAGTGAGG
CGGACCCGCGTATCGACAAGGACTGGGAGAGCGAGGTGATACGCCGCGGG
GTCAGGACAGGGCGAGGCGAGACGAGCGACGGTAGAAGCATGGCTTTAGA
GGGCAGGGGAGCGAGAGACCTGAGTTTGACTGCGTCCTTGAGCAGCATGG
CTTTGCCATCGAAGGGGCTGAAGGACTCTGAGTTCAAGAGCGTGGAGACG
GTCTTGGCGGACATGCGGTCAGTCCAGAGCCgcctggaggagagccaCGA
CCGAAACTCACGGACCGCTGAGAAGACGCGGAGCGAGGTGGCCTCGGTCA
AGGACGGACTGGAAAAGATGCAAAAAGAATTCGGCGGCACGGCGGCCAGG
TTCGAGTATTTTCAGGACGTGCGTATCTTTTTGTCCAGCCTCTGCGGCTG
CCtcagagagaaggaagcgatggtCAGGGAACTAGAGGCCGCCATGGCGC
AACTGTGGAGAGAAGGATACGAGCGGCGAATGAGTAGGAGAGTGCAAGAC
CAGGAAGATGCATTGGAGGAGGCTCTTGAGACGGATGGAAAGGAACAGCA
GTCTTCCCAGGCGGGAATGCTGCTGTCTCTGCAGGGGTACGCCCCGGAGG
TGGTCATCGCCCTGAAAGAGAGCTTGAGCAAGGGAGCAGGTGTGCCTGGC
CCAGCGCATCACGACCTGGACGAGTTTGGGAGGGATGCAAGCGGCAAAAT
GAGCAAGGACAGGCGACGGAGGGAACGGCGGGGCCGCCTGGCAAGCGTGC
TCGAGAGGATCAATGACGGCACGGGCGGCGACAAGGCTGAAGCGGAGGCG
ACTTTCAGCGGCGCCGAGGAAAGTGATTCGGAGGTTGAAACGTTGCGCAC
TAGGCAGGCCAAGTTGCTGGAGGCAGCTGGGGTGATCTTTGAGGACGTAG
CGGACGAATTCAAAGCCCTGGACGCCGTGGTTCAACGCTTTGAGGATTGG
AAACGCAAGTTCCCCAAGGACTATCACACCGCCTATGTCCCCATAGCCTT
GCCTCAAGTACTAGAACCTTACGTACGCGTTGAAATGGTGACCTGGAATC
CGCTTGGGCCAGTGCGTTCGAtggaggatggggatggggcgggcgggaag
gatgTCGGGGGGGCTGCGATCGAGGCCTTCCCCTGGTTTGAGCGCCTGTT
TGAGTACGGACAGtttcaggaggaaggatcggCGCCtaagcaagaaggag
aagatccAGACGACCGTCTAGTGCCACAACTCGTAGAAAAGGTAGCCGTG
AGTCGATTAGAGGGCCTTCTCAATGAGTGCTACGATCCTTTTTCGGAAAG
AGAGACACAGCGAGCAATATCAGCAATACAGGGATTACTCATCTACGAGC
CAGGAAAGCATGCTCTGGAGTCTCTACTTCGAGCACCCTTTTCTCGCTTA
GAGAAAGCCATCACCAAGCTGTGCTTGCCTTTACTTGGACCCGAGGCGGG
AATTTCACTATGGGAGTTCCAGCGGCGACAAATATTTGTCGCATTGAAGC
TCTTTCGCAACGTCTGCTTTTGGCACCAAGTTTTGGCTCCACGTCCCCTT
GCTTCGCTAGTCTTGGGTGTTTTACTAGACGGGAAACTCGCATCAGCGCT
TGAAAACCGTTTGGACAACACGGGCCGTGGAATCCTGTCAAAATCGAAAA
CTGTGCTTGAAGTAATCGGCACCCTTGAGGCCTTGATGATCGCAactccc
ccggccctcgtAGTGAGGGGAGATGGTGTAAGGCTGCTAGGTATGGGGAG
GCTGCTCGACAAGCTTGAAACGCGTGAACTTGCGGGGCCTTTGTCCTCAA
CAGTAAAACGGGTACGGTTGGGGTTTGGAAATGCGATCAAGACCACACAA
AAAGTAAAATAA

Synonyms

Publications