EWM29277.1, cds1381 (CDS) Nannochloropsis gaditana

Overview
NameEWM29277.1
Unique Namecds1381
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:497214..497449 +
Alignment locationCM002457.1:497552..499271 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29277.1
Productgc-rich sequence dna-binding factor 1
Orig transcript idgnl|cribi|Naga_100029g40.9534.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:497214..497449 +
CM002457.1supercontigCM002457.1:497552..499271 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR012890GCFC
IPR022783GCFC_dom
Homology
BLAST of EWM29277.1 vs. NCBI_GenBank
Match: gi|585111800|gb|EWM29277.1| (gc-rich sequence dna-binding factor 1 [Nannochloropsis gaditana])

HSP 1 Score: 1309.28 bits (3387), Expect = 0.000e+0
Identity = 651/651 (100.00%), Postives = 651/651 (100.00%), Query Frame = 0
Query:    1 MNGIGNMNAELASRDSLAPQGAARRLDAISEADPRIDKDWESEVIRRGVRTGRGETSDGRSMALEGRGARDLSLTASLSSMALPSKGLKDSEFKSVETVLADMRSVQSRLEESHDRNSRTAEKTRSEVASVKDGLEKMQKEFGGTAARFEYFQDVRIFLSSLCGCLREKEAMVRELEAAMAQLWREGYERRMSRRVQDQEDALEEALETDGKEQQSSQAGMLLSLQGYAPEVVIALKESLSKGAGVPGPAHHDLDEFGRDASGKMSKDRRRRERRGRLASVLERINDGTGGDKAEAEATFSGAEESDSEVETLRTRQAKLLEAAGVIFEDVADEFKALDAVVQRFEDWKRKFPKDYHTAYVPIALPQVLEPYVRVEMVTWNPLGPVRSMEDGDGAGGKDVGGAAIEAFPWFERLFEYGQFQEEGSAPKQEGEDPDDRLVPQLVEKVAVSRLEGLLNECYDPFSERETQRAISAIQGLLIYEPGKHALESLLRAPFSRLEKAITKLCLPLLGPEAGISLWEFQRRQIFVALKLFRNVCFWHQVLAPRPLASLVLGVLLDGKLASALENRLDNTGRGILSKSKTVLEVIGTLEALMIATPPALVVRGDGVRLLGMGRLLDKLETRELAGPLSSTVKRVRLGFGNAIKTTQKVK 651
            MNGIGNMNAELASRDSLAPQGAARRLDAISEADPRIDKDWESEVIRRGVRTGRGETSDGRSMALEGRGARDLSLTASLSSMALPSKGLKDSEFKSVETVLADMRSVQSRLEESHDRNSRTAEKTRSEVASVKDGLEKMQKEFGGTAARFEYFQDVRIFLSSLCGCLREKEAMVRELEAAMAQLWREGYERRMSRRVQDQEDALEEALETDGKEQQSSQAGMLLSLQGYAPEVVIALKESLSKGAGVPGPAHHDLDEFGRDASGKMSKDRRRRERRGRLASVLERINDGTGGDKAEAEATFSGAEESDSEVETLRTRQAKLLEAAGVIFEDVADEFKALDAVVQRFEDWKRKFPKDYHTAYVPIALPQVLEPYVRVEMVTWNPLGPVRSMEDGDGAGGKDVGGAAIEAFPWFERLFEYGQFQEEGSAPKQEGEDPDDRLVPQLVEKVAVSRLEGLLNECYDPFSERETQRAISAIQGLLIYEPGKHALESLLRAPFSRLEKAITKLCLPLLGPEAGISLWEFQRRQIFVALKLFRNVCFWHQVLAPRPLASLVLGVLLDGKLASALENRLDNTGRGILSKSKTVLEVIGTLEALMIATPPALVVRGDGVRLLGMGRLLDKLETRELAGPLSSTVKRVRLGFGNAIKTTQKVK
Sbjct:    1 MNGIGNMNAELASRDSLAPQGAARRLDAISEADPRIDKDWESEVIRRGVRTGRGETSDGRSMALEGRGARDLSLTASLSSMALPSKGLKDSEFKSVETVLADMRSVQSRLEESHDRNSRTAEKTRSEVASVKDGLEKMQKEFGGTAARFEYFQDVRIFLSSLCGCLREKEAMVRELEAAMAQLWREGYERRMSRRVQDQEDALEEALETDGKEQQSSQAGMLLSLQGYAPEVVIALKESLSKGAGVPGPAHHDLDEFGRDASGKMSKDRRRRERRGRLASVLERINDGTGGDKAEAEATFSGAEESDSEVETLRTRQAKLLEAAGVIFEDVADEFKALDAVVQRFEDWKRKFPKDYHTAYVPIALPQVLEPYVRVEMVTWNPLGPVRSMEDGDGAGGKDVGGAAIEAFPWFERLFEYGQFQEEGSAPKQEGEDPDDRLVPQLVEKVAVSRLEGLLNECYDPFSERETQRAISAIQGLLIYEPGKHALESLLRAPFSRLEKAITKLCLPLLGPEAGISLWEFQRRQIFVALKLFRNVCFWHQVLAPRPLASLVLGVLLDGKLASALENRLDNTGRGILSKSKTVLEVIGTLEALMIATPPALVVRGDGVRLLGMGRLLDKLETRELAGPLSSTVKRVRLGFGNAIKTTQKVK 651          
BLAST of EWM29277.1 vs. NCBI_GenBank
Match: gi|585111799|gb|EWM29276.1| (gc-rich sequence dna-binding factor 1 [Nannochloropsis gaditana])

HSP 1 Score: 1276.92 bits (3303), Expect = 0.000e+0
Identity = 632/636 (99.37%), Postives = 634/636 (99.69%), Query Frame = 0
Query:   16 SLAPQGAARRLDAISEADPRIDKDWESEVIRRGVRTGRGETSDGRSMALEGRGARDLSLTASLSSMALPSKGLKDSEFKSVETVLADMRSVQSRLEESHDRNSRTAEKTRSEVASVKDGLEKMQKEFGGTAARFEYFQDVRIFLSSLCGCLREKEAMVRELEAAMAQLWREGYERRMSRRVQDQEDALEEALETDGKEQQSSQAGMLLSLQGYAPEVVIALKESLSKGAGVPGPAHHDLDEFGRDASGKMSKDRRRRERRGRLASVLERINDGTGGDKAEAEATFSGAEESDSEVETLRTRQAKLLEAAGVIFEDVADEFKALDAVVQRFEDWKRKFPKDYHTAYVPIALPQVLEPYVRVEMVTWNPLGPVRSMEDGDGAGGKDVGGAAIEAFPWFERLFEYGQFQEEGSAPKQEGEDPDDRLVPQLVEKVAVSRLEGLLNECYDPFSERETQRAISAIQGLLIYEPGKHALESLLRAPFSRLEKAITKLCLPLLGPEAGISLWEFQRRQIFVALKLFRNVCFWHQVLAPRPLASLVLGVLLDGKLASALENRLDNTGRGILSKSKTVLEVIGTLEALMIATPPALVVRGDGVRLLGMGRLLDKLETRELAGPLSSTVKRVRLGFGNAIKTTQKVK 651
            S + +GAARRLDAISEADPRIDKDWESEVIRRGVRTGRGETSDGRSMALEGRGARDLSLTASLSSMALPSKGLKDSEFKSVETVLADMRSVQSRLEESHDRNSRTAEKTRSEVASVKDGLEKMQKEFGGTAARFEYFQDVRIFLSSLCGCLREKEAMVRELEAAMAQLWREGYERRMSRRVQDQEDALEEALETDGKEQQSSQAGMLLSLQGYAPEVVIALKESLSKGAGVPGPAHHDLDEFGRDASGKMSKDRRRRERRGRLASVLERINDGTGGDKAEAEATFSGAEESDSEVETLRTRQAKLLEAAGVIFEDVADEFKALDAVVQRFEDWKRKFPKDYHTAYVPIALPQVLEPYVRVEMVTWNPLGPVRSMEDGDGAGGKDVGGAAIEAFPWFERLFEYGQFQEEGSAPKQEGEDPDDRLVPQLVEKVAVSRLEGLLNECYDPFSERETQRAISAIQGLLIYEPGKHALESLLRAPFSRLEKAITKLCLPLLGPEAGISLWEFQRRQIFVALKLFRNVCFWHQVLAPRPLASLVLGVLLDGKLASALENRLDNTGRGILSKSKTVLEVIGTLEALMIATPPALVVRGDGVRLLGMGRLLDKLETRELAGPLSSTVKRVRLGFGNAIKTTQKVK
Sbjct:  206 SWSGKGAARRLDAISEADPRIDKDWESEVIRRGVRTGRGETSDGRSMALEGRGARDLSLTASLSSMALPSKGLKDSEFKSVETVLADMRSVQSRLEESHDRNSRTAEKTRSEVASVKDGLEKMQKEFGGTAARFEYFQDVRIFLSSLCGCLREKEAMVRELEAAMAQLWREGYERRMSRRVQDQEDALEEALETDGKEQQSSQAGMLLSLQGYAPEVVIALKESLSKGAGVPGPAHHDLDEFGRDASGKMSKDRRRRERRGRLASVLERINDGTGGDKAEAEATFSGAEESDSEVETLRTRQAKLLEAAGVIFEDVADEFKALDAVVQRFEDWKRKFPKDYHTAYVPIALPQVLEPYVRVEMVTWNPLGPVRSMEDGDGAGGKDVGGAAIEAFPWFERLFEYGQFQEEGSAPKQEGEDPDDRLVPQLVEKVAVSRLEGLLNECYDPFSERETQRAISAIQGLLIYEPGKHALESLLRAPFSRLEKAITKLCLPLLGPEAGISLWEFQRRQIFVALKLFRNVCFWHQVLAPRPLASLVLGVLLDGKLASALENRLDNTGRGILSKSKTVLEVIGTLEALMIATPPALVVRGDGVRLLGMGRLLDKLETRELAGPLSSTVKRVRLGFGNAIKTTQKVK 841          
BLAST of EWM29277.1 vs. NCBI_GenBank
Match: gi|1109277977|ref|XP_019163208.1| (PREDICTED: transcriptional repressor ILP1 [Ipomoea nil] >gi|1109277980|ref|XP_019163209.1| PREDICTED: transcriptional repressor ILP1 [Ipomoea nil] >gi|1109277982|ref|XP_019163210.1| PREDICTED: transcriptional repressor ILP1 [Ipomoea nil] >gi|1109277984|ref|XP_019163211.1| PREDICTED: transcriptional repressor ILP1 [Ipomoea nil] >gi|1109277986|ref|XP_019163212.1| PREDICTED: transcriptional repressor ILP1 [Ipomoea nil])

HSP 1 Score: 211.46 bits (537), Expect = 1.377e-54
Identity = 169/552 (30.62%), Postives = 256/552 (46.38%), Query Frame = 0
Query:  103 MRSVQSRLEESHDRNSRTAEKTRSEVASVKDGLEKMQKEFGGTAARFEYFQDVRIFLSSLCGCLREKEAMVRELEAAMAQLWREGYERRMSRRVQDQEDALEEALETDGKEQQSSQAGMLLSLQGYAPEVVIALKESLSKGAGVPGPAHH---DLDEFGRDASGKMSKDRRRRE--RRGRLASV----LERINDGTGGDKAEAEATFSGAEESDSEVETLRTRQAKLLEAAGVIFEDVADEFKALDAVVQRFEDWKRKFPKDYHTAYVPIALPQVLEPYVRVEMVTWNPLGPVRSMEDGDGAGGKDVGGAAIEAFPWFERLFEYGQFQEEGSAPKQEGEDPDDRLVPQLVEKVAVSRLEGLLNECYDPFSERETQRAISAIQGLLIYEP-GKHALESLLRAPFSRLEKAITKLCLPLLG-------PEAG-ISLWEFQRRQIFVALKLFRNVCFWHQVLAPRPLASLVLGVLLDGKLASALENRLDNTGRGILSKSKTVLEVIGTLE--ALMIATPPALVVRGDGVRLLGMGRLLDK--------LETRELA 626
            M     R++ESH R   +  KT   ++S    +  ++        ++ + Q++R F+S +C  L+EK   + ELE  M +L +   E  + RR  D ED + E       E   S A  + S +G +   ++A KE+  + A            LDEFGRD + +   D  RRE  R  R A      +  I + +   + E E++  G   SDSE    R+ + +LL+ A  IF D  DE+  L  VV +FE WK+ +   Y  AY+P+++P +L PYVR+E++ W+PL      ED D    K           W   LF YG  + +    +   +D D  L+PQLVEK+A+  L   L  C+D  S RET+ A+SAI  +  Y P    AL  L+    +RL  A+ KL +P          P A  I+ + F      ++++L RN+C W+ VLA   L  L L  LL GK+   L N   +    I    + V  + G     +++    P L    D   LL + R+L+K        LET +LA
Sbjct:  405 MHENACRIKESHGRTVASLSKTEENLSSSLSNVTTLENSLAAAGEKYIFMQNLRDFVSVICSFLQEKAPYIEELEDQMQKLHKARAEAILERRAADNEDEMREL------EDAISAAKQVFSERGSSAATIVAAKEAALRAAAEARRLRDLPVKLDEFGRDLNQQKRMDMARREKAREHRRAKSDTKRMSTIKNDSSYQRVEGESSTDG---SDSESTAYRSNRDQLLQVAEEIFSDTNDEYSQLAVVVDKFERWKKGYSSSYRDAYMPLSIPGILSPYVRLELLKWDPL-----HEDADFMDMK-----------WHSLLFNYGLPEHDS---EFSSDDADANLIPQLVEKLAIPILHNHLAHCWDMLSTRETKYAVSAINLVFRYVPLSSSALGDLVAVLRNRLADAVAKLVVPKWDSILMKAVPNAARIAAYRFG-----MSVRLMRNICLWNNVLAMPVLEKLALDELLSGKILPHLRNIQSDIDDAITRTERIVASLYGVWAGPSVIGNHSPKLQPLVD--YLLALSRMLEKKHLSTGAELETGKLA 921          
BLAST of EWM29277.1 vs. NCBI_GenBank
Match: gi|1104511522|ref|XP_019073049.1| (PREDICTED: transcriptional repressor ILP1 [Vitis vinifera])

HSP 1 Score: 201.06 bits (510), Expect = 4.635e-51
Identity = 159/542 (29.34%), Postives = 258/542 (47.60%), Query Frame = 0
Query:  109 RLEESHDRNSRTAEKTRSEVASVKDGLEKMQKEFGGTAARFEYFQDVRIFLSSLCGCLREKEAMVRELEAAMAQLWREGYERRMSRRVQDQEDALEEALETDGKEQQSSQAGMLLSLQGYAPEVVIALKESLSKGAGVPGPAHHDLDEFGRDASGK--MSKDRR---RRERRGRL-ASVLERINDGTGGDKAEAEATFSGAEESDSEVETLRTRQAKLLEAAGVIFEDVADEFKALDAVVQRFEDWKRKFPKDYHTAYVPIALPQVLEPYVRVEMVTWNPLGPVRSMEDGDGAGGKDVGGAAIEAFPWFERLFEYGQFQEEGS--APKQEGEDPDDRLVPQLVEKVAVSRLEGLLNECYDPFSERETQRAISAIQGLLIYEPG-KHALESLLRAPFSRLEKAITKLCLP---LLGPEAGISLWEFQRRQIFVALKLFRNVCFWHQVLAPRPLASLVLGVLLDGKLASALENRLDNTGRGILSKSKTVLEVIGTLEALMIATPPALVVRGDGVRLL--GMGRLLDKLETRELAGPLSSTVKRV 636
            RL+ESH R   +  +T   ++S    +  ++K       +F + Q +R F+S +C  L+ K   + ELE  M +L  E     + RR  D ++ +E     D      +++G   ++   A     A   ++ +   +P      LDE+GRD + +  M K+RR   R+ +R R  A  +  + + +   K E E   S  +ESDSE    ++ +  LL+ A  IF D A+E+  L AV +R E WK+++   Y  AY+ +++P +  PYVR+E++ W+PL      E+ D            +   W   LF YG   E+G+  +P    +D D  LVP+LVE+VA+  L   L  C+D FS RET+ A+SA   ++ Y P    AL  LL     RL KA+T   +P   +L  +A  +       +  ++++L RN+C W  +LA   L  LVL  LL G++   +EN   +    I    + +  + G     + A P     R + ++ L   + RL  +LE R L G   S   R+
Sbjct:  397 RLKESHGRTMSSLTRTDENLSSSLSNITTLEKSLTAAGEKFIFMQMLRDFVSVICDFLQHKAPFIEELEEQMQKLHEERASAILERRAADNDEMMEIQASVDAAMSVFTKSGSNEAMVAAARTAAQAASAAMREQTNLPV----KLDEYGRDINLQKCMDKNRRSEARQRKRDRWDAKRMTFLENESSHQKIEGE---SSTDESDSETTAYQSNRDLLLQTAEQIFGDAAEEYSQLSAVKERIERWKKQYSSSYRDAYMSLSVPAIFSPYVRLELLKWDPL-----YEEAD-----------FDDMKWHSLLFNYG-LSEDGNDFSP----DDADANLVPELVERVALPILHHELAHCWDIFSTRETKNAVSATNLVIRYIPASSEALGELLAVVHKRLYKALTNFMVPPWNILVMKAVPNAARVAAYRFGMSIRLMRNICLWKDILALPVLEKLVLDQLLSGQVLPHIENIASDVHDAITRTERIISSLSG-----VWAGPSVTGERSNKLQPLVDYVLRLGKRLEKRHLPGVTESDTSRL 905          
BLAST of EWM29277.1 vs. NCBI_GenBank
Match: gi|567912373|ref|XP_006448500.1| (hypothetical protein CICLE_v10014191mg [Citrus clementina] >gi|557551111|gb|ESR61740.1| hypothetical protein CICLE_v10014191mg [Citrus clementina])

HSP 1 Score: 200.29 bits (508), Expect = 6.166e-51
Identity = 167/593 (28.16%), Postives = 272/593 (45.87%), Query Frame = 0
Query:   36 IDKD--WESEVIRRGVRTGRGETSDGRSMALEGRGARDLSLTASLSSMALP---------------SKGLKDSEF-KSVETVLADMRSVQSRLEESHDRNSRTAEKTRSEVASVKDGLEKMQKEFGGTAARFEYFQDVRIFLSSLCGCLREKEAMVRELEAAMAQLWREGYERRMSRRVQDQEDALEEALETDGKEQQSSQAGMLLSLQGYAPEVVIALKES--------LSKGAGVPGPAHHDLDEFGRDASGKMSKDRRRR-----ERRGRL-ASVLERINDGTGGDKAEAEATFSGAEESDSEVETLRTRQAKLLEAAGVIFEDVADEFKALDAVVQRFEDWKRKFPKDYHTAYVPIALPQVLEPYVRVEMVTWNPLGPVRSMEDGDGAGGKDVGGAAIEAFPWFERLFEYGQFQEEGSAPKQEGE-----DPDDRLVPQLVEKVAVSRLEGLLNECYDPFSERETQRAISAIQGLLIYEP-GKHALESLLRAPFSRLEKAITKLCLPLLGPEAGISLWEFQRRQIF---VALKLFRNVCFWHQVLAPRPLASLVLGVLLDGK-------LASALENRLDNTGRGILSKS 580
            +D+D  WE E +R+G+    G+  D  S+ +    +  +++       + P               S+GL      +  E+ +  +++  +RL+ESH R   + +KT  +++S    +  ++        RF + Q +R ++S +C  L++K   +  LEA M +L +E     + RR  D +D + E       E     A + +  +G +   + A   +        + +   +P      LDEFGRD + +  +D  RR      RR R     L  ++      K E E+T    +ESDSE E  ++ + +LL+ A  IF D A+E+  L  V +RFE WKR +   Y  AY+ ++ P ++ PYVR+E++ W+PL      ED D +  K           W   LF YG        PK +GE     D D  LVP LVEKVA+  L   +  C+D  S RET+  +SA   ++ Y P    AL+ LL A  +RL +A+  + +P   P A  ++    R   +   V+++L RN+C W +V A   L  L L  LL  K       +AS + + +  T R + S S
Sbjct:  286 VDEDVMWEEEQVRKGL----GKRIDDSSVRVGANTSSSVAMPQQQQQFSYPTTVTPIPSIGGAIGASQGLDTMSIAQKAESAMKALQTNVNRLKESHARTMSSLKKTDEDLSSSLLKITDLESSLSAAGERFIFMQKLRDYVSVICDFLQDKAPYIETLEAEMQKLNKERASAILERRAADNDDEMTEV------EAAIKAATLFIGDRGNSASKLTAASSAAQAAAAAAIKEQTNLPV----KLDEFGRDMNLQKRRDMERRAESRQHRRTRFDLKQLSSMDADISSQKLEGEST---TDESDSETEAYQSNREELLKTAEHIFSDAAEEYSQLSVVKERFEKWKRDYSSSYRDAYMSLSTPAIMSPYVRLELLKWDPLH-----EDADFSEMK-----------WHNLLFNYG-------LPK-DGEDFAHDDADANLVPTLVEKVALPILHHDIAYCWDMLSTRETKNVVSATILVMAYVPTSSEALKDLLVAIHTRLAEAVANIAVPTWSPLAMSAVPNSARIAAYRFGVSVRLMRNICLWKEVFALPILEKLALDELLCRKVLPHVRSIASNVHDAISRTERIVASLS 837          
BLAST of EWM29277.1 vs. NCBI_GenBank
Match: gi|1111147720|ref|XP_019256871.1| (PREDICTED: transcriptional repressor ILP1 [Nicotiana attenuata] >gi|1102139394|gb|OIS95808.1| hypothetical protein A4A49_16755 [Nicotiana attenuata])

HSP 1 Score: 199.519 bits (506), Expect = 1.305e-50
Identity = 153/528 (28.98%), Postives = 244/528 (46.21%), Query Frame = 0
Query:  109 RLEESHDRNSRTAEKTRSEVASVKDGLEKMQKEFGGTAARFEYFQDVRIFLSSLCGCLREKEAMVRELEAAMAQLWREGYERRMSRRVQDQEDALEEALE--TDGKEQQSSQAGMLLSLQGYAPEVVIALKESLSKGAGVPGPAHHDLDEFGRDASGKMSKDRRRRERRGRLASV------LERINDGTGGDKAEAEATFSGAEESDSEVETLRTRQAKLLEAAGVIFEDVADEFKALDAVVQRFEDWKRKFPKDYHTAYVPIALPQVLEPYVRVEMVTWNPLGPVRSMEDGDGAGGKDVGGAAIEAFPWFERLFEYGQFQEEGSAPKQEGEDPDDRLVPQLVEKVAVSRLEGLLNECYDPFSERETQRAISAIQGLLIYEP-GKHALESLLRAPFSRLEKAITKLCLPLLG-------PEAG-ISLWEFQRRQIFVALKLFRNVCFWHQVLAPRPLASLVLGVLLDGKLASALENRLDNTGRGILSKSKTVLEVIGTLEALMIATPPALVVRGDGVRLLGMGRLLDK 619
            RL+ESH R   +  KT   +++    +  ++        ++ + Q +R F+S +C  L++K   + ELE  M +L  E  E  + RR  D +D + E LE   +   Q  S+ G   +    A     A   S+ KG  +P     +LDEFGRD + +   D  RR    +L  V      +  I   +   K E E+T    +ESDSE     + + +LL+ A  IF D  +E+  L  VV++F+ WK+ +   Y  AY+ +++P +  PYVR+E++ W+PL      E+ D                W   LF YG  + E        +D D  L+PQLVEK+AV  L   L  C+D  S  ET+ A+SA++ +L Y P    AL +L+     RL  A+  L +P          P+A  ++ + F      ++++L RN+C +H++ A   L  LVL  L  GK+   L +   N    +    + V  V G      +    +  +R     LL +GR+L+K
Sbjct:  367 RLKESHGRTVASLNKTEENLSASLSNVTTLENSLSAAGEKYMFMQKLRDFVSVICTLLQDKAPYIEELEDQMQKLHEERAEATLERRAADNDDEMRE-LEAAVNAARQVLSKGGSNAATIEAATAAAQAATASMRKGGDLPA----ELDEFGRDVNLQKRMDTTRRAEARKLRRVRNDVKRMSAIERDSSYHKIEGEST---TDESDSESTAYESNRDQLLQVAEQIFGDAHEEYSQLSLVVEKFDRWKKDYASSYRDAYMSLSIPAIFSPYVRLELLKWDPL-----HENAD-----------FMDMNWHSLLFNYGLPEGESEIST---DDADANLIPQLVEKLAVPILHNQLANCWDMLSTSETECAVSAMKLVLRYGPFSGSALSNLVAVLRDRLADAVANLKVPTWDTLLMRAVPDAARVAAYRFG-----MSIRLMRNICLFHEIFAMPVLEELVLDQLFSGKILPHLRSIQSNIHDAVTRTERVVASVRGVWAGPKVTGDCSPKLRPLVDYLLKLGRVLEK 862          
BLAST of EWM29277.1 vs. NCBI_GenBank
Match: gi|568828706|ref|XP_006468681.1| (PREDICTED: PAX3- and PAX7-binding protein 1 [Citrus sinensis])

HSP 1 Score: 198.364 bits (503), Expect = 3.559e-50
Identity = 172/591 (29.10%), Postives = 274/591 (46.36%), Query Frame = 0
Query:   36 IDKD--WESEVIRRG---------VRTGRGETSDGRSMALEGRGARDLSLTASLSSMALPS--------KGLKD-SEFKSVETVLADMRSVQSRLEESHDRNSRTAEKTRSEVASVKDGLEKMQKEFGGTAARFEYFQDVRIFLSSLCGCLREKEAMVRELEAAMAQLWREGYERRMSRRVQDQEDALEEALETDGKEQQSSQAGMLLSLQGYAPEVVIALKESLSKGAGVPGPAHHDL----DEFGRDASGKMSKDRRRR-----ERRGRL-ASVLERINDGTGGDKAEAEATFSGAEESDSEVETLRTRQAKLLEAAGVIFEDVADEFKALDAVVQRFEDWKRKFPKDYHTAYVPIALPQVLEPYVRVEMVTWNPLGPVRSMEDGDGAGGKDVGGAAIEAFPWFERLFEYGQFQEEGSAPKQEGE-----DPDDRLVPQLVEKVAVSRLEGLLNECYDPFSERETQRAISAIQGLLIYEP-GKHALESLLRAPFSRLEKAITKLCLPLLGPEAGISLWEFQRRQIF---VALKLFRNVCFWHQVLAPRPLASLVLGVLLDGK-------LASALENRLDNTGRGILSKS 580
            +D+D  WE E +R+G         VR G   TS   +M  + +       + S +   +PS        +GL   S  +  E+ +  +++  +RL+ESH R   + +KT  +++S    +  ++        +F + Q +R ++S +C  L++K   +  LEA M +L +E     + RR  D +D + E       E     A +++  +G +   +IA   +    A        +L    DEFGRD + +  +D  RR      RR R     L  ++      K E E+T    +ESDSE E  ++ + +LL+ A  IF D A+E+  L  V +RFE WKR +   Y  AY+ ++ P ++ PYVR+E++ W+PL      ED D +  K           W   LF YG        PK +GE     D D  LVP LVEKVA+  L   +  C+D  S RET+ A+SA   ++ Y P    AL+ LL A  +RL +A+  + +P     A  ++    R   +   V+++L RN+C W +V A   L  L L  LL  K       +AS + + +  T R + S S
Sbjct:  286 VDEDVMWEEEQVRKGLGKRIDDGSVRVG-ANTSSSVAMPQQQQ-----QFSYSTTVTPIPSIGGAIGASQGLDTMSIAQKAESAMKALQTNVNRLKESHARTMSSLKKTDEDLSSSLLKITDLESSLSAAGEKFIFMQKLRDYVSVICDFLQDKAPYIETLEAEMQKLNKERASAILERRAADNDDEMTEV------EAAIKAATLVIGDRGNSASKLIAASSAAQAAAAAAVKEQTNLPVKLDEFGRDMNLQKRRDMERRAESRQHRRTRFDLKQLSSMDADISSQKLEGEST---TDESDSETEAYQSNREELLKTAEHIFSDAAEEYSQLSVVKERFEKWKRDYSSSYRDAYMSLSTPAIMSPYVRLELLKWDPLH-----EDADFSEMK-----------WHNLLFNYG-------LPK-DGEDFAHDDADANLVPTLVEKVALPILHHDIAYCWDMLSTRETKNAVSATILVMAYVPTSSEALKDLLVAIHTRLAEAVANIAVPTWSSLAMSAVPNAARIAAYRFGVSVRLMRNICLWKEVFALPILEKLALDELLCRKVLPHVRSIASNVHDAISRTERIVASLS 837          
BLAST of EWM29277.1 vs. NCBI_GenBank
Match: gi|1130857952|dbj|GAV62367.1| (GCFC domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 195.282 bits (495), Expect = 3.164e-49
Identity = 151/494 (30.57%), Postives = 237/494 (47.98%), Query Frame = 0
Query:  109 RLEESHDRNSRTAEKTRSEVASVKDGLEKMQKEFGGTAARFEYFQDVRIFLSSLCGCLREKEAMVRELEAAMAQLWREGYERRMSRRVQDQEDALEEALETDGKEQQS--SQAGMLLSLQGYAPEVVIALKESLSKGAGVPGPAHHDLDEFGRDAS--GKMSKDRR---RRERRGRLASV-LERINDGTGGDKAEAEATFSGAEESDSEVETLRTRQAKLLEAAGVIFEDVADEFKALDAVVQRFEDWKRKFPKDYHTAYVPIALPQVLEPYVRVEMVTWNPLGPVRSMEDGDGAGGKDVGGAAIEAFPWFERLFEYGQFQEEGS--APKQEGEDPDDRLVPQLVEKVAVSRLEGLLNECYDPFSERETQRAISAIQGLLIY-EPGKHALESLLRAPFSRLEKAITKLCLPLLGPEAGISLWEFQRRQIF---VALKLFRNVCFWHQVLAPRPLASLVLGVLLDGKLASALENRLDNTGRGILSKSKTVLEVIG 588
            RL+ESHD+   +  KT   ++S    +  ++K       +F + Q +R ++S +C  L+ K   + ELE  M +L  E     + RR  D +D + E +E+  K   S  ++ G   ++   A     A   S+ +   +P      LDEFGRD +   +MS  RR   R+ R+ R  S  L  +       K E E   S  +ESD +    ++ +  LL+ A  IF D  DE+  L  + +RFE WKR +   YH AY+ ++ P +  PYVR+E++ W+PL      +D D    K           W   LF YGQ QE+GS  +P    +D D  L+P+LVE+VA+  L   +  C+D FS RET+ A+SA   +  Y +P   AL  LL A  +RL  A+T   +P   P    ++    R   +   ++++L RN+C W +++A   L  LVL  LL  K+   + +   N    +    + V  + G
Sbjct:  377 RLKESHDKTISSLTKTDENLSSSLLNITALEKSLSAAGEKFIFMQKLRDYVSVMCEFLQHKAPFIEELEEQMQKLREERASAILERRAADNDDEMME-VESAVKAAMSVFNECGSSTAMIAVAASAAQAASVSIREQTNLPVM----LDEFGRDMNLQKRMSMTRRAEARQYRKVRFDSKRLASMEIDESYRKVEGE---SSTDESDGDSSAYQSNRDLLLQTADQIFSDALDEYSQLSVIKERFERWKRDYSSSYHDAYMSLSAPAIFSPYVRLELLKWDPLH-----DDADFFDMK-----------WHSLLFNYGQ-QEDGSDFSP----DDADANLIPRLVERVALPILHHEIVHCWDIFSTRETKNAVSATSLVTNYIKPSSEALAELLVAIRTRLSDAVTNTIVPSWSPLVLKAVPNAARVAAYRFGMSVRLMRNICLWKEIMALPVLEKLVLDDLLCEKVLPHVRSIASNVHDAVTRTERIVAALSG 841          
BLAST of EWM29277.1 vs. NCBI_GenBank
Match: gi|641858323|gb|KDO77045.1| (hypothetical protein CISIN_1g002517mg [Citrus sinensis])

HSP 1 Score: 194.897 bits (494), Expect = 4.327e-49
Identity = 171/591 (28.93%), Postives = 273/591 (46.19%), Query Frame = 0
Query:   36 IDKD--WESEVIRRG---------VRTGRGETSDGRSMALEGRGARDLSLTASLSSMALPS--------KGLKD-SEFKSVETVLADMRSVQSRLEESHDRNSRTAEKTRSEVASVKDGLEKMQKEFGGTAARFEYFQDVRIFLSSLCGCLREKEAMVRELEAAMAQLWREGYERRMSRRVQDQEDALEEALETDGKEQQSSQAGMLLSLQGYAPEVVIALKESLSKGAGVPGPAHHDL----DEFGRDASGKMSKDRRRR-----ERRGRL-ASVLERINDGTGGDKAEAEATFSGAEESDSEVETLRTRQAKLLEAAGVIFEDVADEFKALDAVVQRFEDWKRKFPKDYHTAYVPIALPQVLEPYVRVEMVTWNPLGPVRSMEDGDGAGGKDVGGAAIEAFPWFERLFEYGQFQEEGSAPKQEGE-----DPDDRLVPQLVEKVAVSRLEGLLNECYDPFSERETQRAISAIQGLLIYEP-GKHALESLLRAPFSRLEKAITKLCLPLLGPEAGISLWEFQRRQIF---VALKLFRNVCFWHQVLAPRPLASLVLGVLLDGK-------LASALENRLDNTGRGILSKS 580
            +D+D  WE E +R+G         VR G   TS   +M  + +       + S +   +PS        +GL   S  +  E+ +  +++  +RL+ESH R   + +KT  +++S    +  ++        +F + Q +R ++S +C  L++K   +  LEA M +L +E     + RR  D +D + E       E     A +++  +G +   +IA   +    A        +L    DEFGRD + +  +D  RR      RR R     L  ++      K E E+T    +ESDSE E  ++ + +LL+ A  IF D A+E+  L  V +RFE WKR +   Y  AY+ ++ P ++ PYVR+E++ W+PL      ED D +  K           W   LF YG        PK +GE     D D  LVP LVEKVA+  L   +  C+D  S RET+ A+SA   ++ Y P    AL+ LL A  + L +A+  + +P     A  ++    R   +   V+++L RN+C W +V A   L  L L  LL  K       +AS + + +  T R + S S
Sbjct:  286 VDEDVMWEEEQVRKGLGKRIDDGSVRVG-ANTSSSVAMPQQQQ-----QFSYSTTVTPIPSIGGAIGASQGLDTMSIAQKAESAMKALQTNVNRLKESHARTMSSLKKTDEDLSSSLLKITDLESSLSAAGEKFIFMQKLRDYVSVICDFLQDKAPYIETLEAEMQKLNKERASAILERRAADNDDEMTEV------EAAIKAATLVIGDRGNSASKLIAASSAAQAAAAAAVKEQTNLPVKLDEFGRDMNLQKRRDMERRAESRQHRRTRFDLKQLSSMDADISSQKLEGEST---TDESDSETEAYQSNREELLKTAEHIFSDAAEEYSQLSVVKERFEKWKRDYSSSYRDAYMSLSTPAIMSPYVRLELLKWDPLH-----EDADFSEMK-----------WHNLLFNYG-------LPK-DGEDFAHDDADANLVPTLVEKVALPILHHDIAYCWDMLSTRETKNAVSATILVMAYVPTSSEALKDLLVAIHTCLAEAVANIAVPTWSSLAMSAVPNAARIAAYRFGVSVRLMRNICLWKEVFALPILEKLALDELLCRKVLPHVRSIASNVHDAISRTERIVASLS 837          
BLAST of EWM29277.1 vs. NCBI_GenBank
Match: gi|743868793|ref|XP_011033096.1| (PREDICTED: PAX3- and PAX7-binding protein 1 isoform X2 [Populus euphratica])

HSP 1 Score: 192.2 bits (487), Expect = 4.842e-48
Identity = 164/544 (30.15%), Postives = 249/544 (45.77%), Query Frame = 0
Query:  109 RLEESHDRNSRTAEKTRSEVASVKDGLEKMQKEFGGTAARFEYFQDVRIFLSSLCGCLREKEAMVRELEAAMAQLWREGYERRMSRRVQDQEDALEEALETDGKEQQSSQAGMLLSLQGYAPEVV-------IALKESLSKGAGVPGPAHHDLDEFGRDAS--GKMSKDRR---RRERRGRLASV-LERINDGTGGDKAEAEATFSGAEESDSEVETLRTRQAK---LLEAAGVIFEDVADEFKALDAVVQRFEDWKRKFPKDYHTAYVPIALPQVLEPYVRVEMVTWNPLGPVRSMEDGDGAGGKDVGGAAIEAFPWFERLFEYGQFQEEGSAPKQEGEDPDDRLVPQLVEKVAVSRLEGLLNECYDPFSERETQRAISAIQGLLIYEPG-KHALESLLRAPFSRLEKAITKLCLP---LLGPEAGISLWEFQRRQIFVALKLFRNVCFWHQVLAPRPLASLVLGVLLDGKLASALENRLDNTGRGILSKSKTVLEVIGTLEALMIATPPALVVRGDGVR-----LLGMGRLLDKLETRELAG 627
            RL+ESH R +    KT   +++    +  ++K       +F + Q +R F+S +C  L+ K  ++ ELE  M +L  E     + RR  D ED + E       E     A  + S +G +   +        A   +L   A +P      LDEFGRD +   +M  ++R   R+ R+ R  S  L  +   +   K E E +    +ESDS+ E     Q+    LL  A  IF D ++E+  L  V +RFE WK+++   Y  AY+ ++ P +  PYVR+E++ WNPL      ED D    K           W   LF YG   E+GS      +D D  LVP LVEK+A+  L   +  C+D  S RET+ AISA   ++ Y P    AL  LL A  +RL  A+  + +P   LL  +A  S  +    +  V+++L RN+C W  +LA   L  LVL  LL GK+   + +   N    +    + V  + G       A P A       ++     +L +GR L+K   R ++G
Sbjct:  430 RLKESHGRTTSLLSKTDENLSASLMNVTALEKSISAAGEKFIFMQKLRDFVSVICEFLQHKATLIEELEERMQKLHEEQASLILERRTADNEDEMMEV------EAAVKAAMSVFSARGNSAATIDAAKSAAAAALVALKDQANLPV----KLDEFGRDINLQKRMDMEKRAKARQRRKARFDSKRLSYMEVDSSDQKIEGELS---TDESDSDSEKNAAYQSTRDLLLRTAEEIFSDASEEYSQLSVVKERFETWKKEYFASYRDAYMSLSAPAIFSPYVRLELLKWNPLH-----EDADFFDMK-----------WHSLLFNYG-LPEDGS--DLNPDDVDANLVPGLVEKIAIPILHHEIAHCWDMLSTRETKNAISATSLVINYVPATSEALSELLAAIRTRLADAVASIVVPTWSLLVLKAVPSAAQVAAYRFGVSVRLMRNICLWKDILALPVLEKLVLDELLCGKVLPHVRSIASNVHDAVTRTERIVASLSGAW-----AGPSATSDHSHKLQPLVDFILSIGRTLEK---RHVSG 933          
The following BLAST results are available for this feature:
BLAST of EWM29277.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111800|gb|EWM29277.1|0.000e+0100.00gc-rich sequence dna-binding factor 1 [Nannochloro... [more]
gi|585111799|gb|EWM29276.1|0.000e+099.37gc-rich sequence dna-binding factor 1 [Nannochloro... [more]
gi|1109277977|ref|XP_019163208.1|1.377e-5430.62PREDICTED: transcriptional repressor ILP1 [Ipomoea... [more]
gi|1104511522|ref|XP_019073049.1|4.635e-5129.34PREDICTED: transcriptional repressor ILP1 [Vitis v... [more]
gi|567912373|ref|XP_006448500.1|6.166e-5128.16hypothetical protein CICLE_v10014191mg [Citrus cle... [more]
gi|1111147720|ref|XP_019256871.1|1.305e-5028.98PREDICTED: transcriptional repressor ILP1 [Nicotia... [more]
gi|568828706|ref|XP_006468681.1|3.559e-5029.10PREDICTED: PAX3- and PAX7-binding protein 1 [Citru... [more]
gi|1130857952|dbj|GAV62367.1|3.164e-4930.57GCFC domain-containing protein [Cephalotus follicu... [more]
gi|641858323|gb|KDO77045.1|4.327e-4928.93hypothetical protein CISIN_1g002517mg [Citrus sine... [more]
gi|743868793|ref|XP_011033096.1|4.842e-4830.15PREDICTED: PAX3- and PAX7-binding protein 1 isofor... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1383rna1383Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications