NO09G00010, NO09G00010 (gene) Nannochloropsis oceanica

Overview
NameNO09G00010
Unique NameNO09G00010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3625
Alignment locationchr9:464..4088 +

Link to JBrowse

Properties
Property NameValue
DescriptionEGF-like region, conserved site
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:464..4088 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO09G00010 vs. NCBI_GenBank
Match: EWM27831.1 (EGF-like region, conserved site [Nannochloropsis gaditana])

HSP 1 Score: 368.2 bits (944), Expect = 2.200e-98
Identity = 173/256 (67.58%), Postives = 209/256 (81.64%), Query Frame = 0 
Query:    1 MARLSYCFSLVFLPTLLSVLTVQAHDRWPGSLTCPSTTKQVLAPTLNASGLCDCAPGWNGPECGVCTTNDACAAVYGEGSKCSQTSFAGEKKLEGFCEITSPAITDLLHGTGIVQMKYAPGDFSFLFLKRHDSPDDPSKATYLPIFRCMSDQTTVSTNHGTGMVTYTSPDLSCELTCVVGQDRACSIMLQRVVKAVGAMGGSTIICDPFTKGCRVKEMTLETFIDGGVQTTGCLMSECLPPLATPVIKTKPTLTAP 257
            MARL    +L+ +  LL +L V  H+ WPGS TCP T  Q L+P +NASG+CDCA GW GPECG+CT+++ACA++ GEGS+C+QTSFAGEKKL GFCEIT+PAITDLLHGTG VQMK+ PGDFSFLF+KRHD+P DP+ ATYLPIFRC SD+TTV TNHGTG VTYTSPDLSC LTCVVG+DR+C+ +L+RVVK VG++GGSTIICDPFTK C VKE+TL+TFI GGV+T  C +SECL P+  P++  K T   P
Sbjct:   21 MARLFSSSALLLISALLPLLDVGGHEAWPGSFTCPPT--QTLSPRVNASGVCDCAAGWVGPECGICTSDEACASIEGEGSRCAQTSFAGEKKLAGFCEITTPAITDLLHGTGFVQMKFEPGDFSFLFIKRHDNPTDPALATYLPIFRCQSDRTTVKTNHGTGAVTYTSPDLSCALTCVVGEDRSCTSILERVVKTVGSLGGSTIICDPFTKACAVKEITLDTFIAGGVKTANCQVSECLAPV--PLVSPKTTPLQP 272
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BLAST of NO09G00010 vs. NCBI_GenBank
Match: XP_005853422.1 (hypothetical protein NGA_0487310 [Nannochloropsis gaditana CCMP526] >EKU22938.1 hypothetical protein NGA_0487310 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 264.2 bits (674), Expect = 4.400e-67
Identity = 138/256 (53.91%), Postives = 164/256 (64.06%), Query Frame = 0 
Query:    1 MARLSYCFSLVFLPTLLSVLTVQAHDRWPGSLTCPSTTKQVLAPTLNASGLCDCAPGWNGPECGVCTTNDACAAVYGEGSKCSQTSFAGEKKLEGFCEITSPAITDLLHGTGIVQMKYAPGDFSFLFLKRHDSPDDPSKATYLPIFRCMSDQTTVSTNHGTGMVTYTSPDLSCELTCVVGQDRACSIMLQRVVKAVGAMGGSTIICDPFTKGCRVKEMTLETFIDGGVQTTGCLMSECLPPLATPVIKTKPTLTAP 257
            MARL    +L+ +  LL +L V  H+ WPGS TCP T  Q L+P                                                  GFCEIT+PAITDLLHGTG VQMK+ PGDFSFLF+KRHD+P DP+ ATYLPIFRC SD+TTV TNHGTG VTYTSPDLSC LTCVVG+DR+C+ +L+RVVK VG++GGSTIICDPFTK C VKE+TL+TFI GGV+T  C +SECL P+  P++  K T   P
Sbjct:    1 MARLFSSSALLLISALLPLLDVGGHEAWPGSFTCPPT--QTLSPR------------------------------------------------AGFCEITTPAITDLLHGTGFVQMKFEPGDFSFLFIKRHDNPTDPALATYLPIFRCQSDRTTVKTNHGTGAVTYTSPDLSCALTCVVGEDRSCTSILERVVKTVGSLGGSTIICDPFTKACAVKEITLDTFIAGGVKTANCQVSECLAPV--PLVSPKTTPLQP 204
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BLAST of NO09G00010 vs. NCBI_GenBank
Match: EWM25738.1 (atp-dependent permease [Nannochloropsis gaditana])

HSP 1 Score: 176.8 bits (447), Expect = 9.300e-41
Identity = 100/236 (42.37%), Postives = 136/236 (57.63%), Query Frame = 0 
Query:   16 LLSVLTVQAHDRWPGSLTCPSTTKQVLAPTLNASGLCDCAPGWNGPECGVCTTNDACAAVYGEGSK-CSQTSFAGEKKLEGFCEITSPAITDLLHGTGIVQMKYAP-GDFSFLFLKRHDSPDDPSKATYLPIFRCMSDQTTVSTNHGTGMVTYTSPDLSCELTCVVGQDRACSIMLQRVVKAVGAMGGSTIICDPFTKGCRVKEMTLETFIDGGVQTTGCLMSECLPPLATPVIKT 250
            LLS+L V        + TC  +    L+ ++  +GLC+C PGW GP C +CTT+ AC  +  +    C   +F   ++  G+C I +  +T+L+HG G VQ+ YA  G F F F+KR    D      YL +FRC S +T V+ +   G V Y+SPDL C +TCV+G DR C+  L  +V  VGA GGS I CDP  + C V+E TL+ F+ GGVQTTGC MSEC     T V+ T
Sbjct:   23 LLSLLLVTTK-----AFTC--SPALALSESVGPNGLCECNPGWYGPTCEICTTDQACGILLRDSDGICRNDTFTAIRESFGWCAIANEDVTNLIHGDGFVQIYYAANGTFFFDFVKRRGDGD------YLSLFRCHSKKTKVTEDPKLGQVKYSSPDLVCNMTCVIGSDRTCTQGLSGIVDQVGAKGGSKITCDPAARTCDVQEATLDLFL-GGVQTTGCYMSECARRGETVVVST 244
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BLAST of NO09G00010 vs. NCBI_GenBank
Match: EWM27462.1 (putative abc transporter [Nannochloropsis gaditana])

HSP 1 Score: 87.8 bits (216), Expect = 5.700e-14
Identity = 70/253 (27.67%), Postives = 100/253 (39.53%), Query Frame = 0 
Query:    8 FSLVFLPTLLSVLTVQAHDRWPGSLTCPSTTKQVLAPTLNASGLCDCAPGWNGPECGVCTTNDACAAVYGEGSKCSQTSFAG------EKKLE------GFCEITSPAITDLLHGTGIVQMKY-APGDFSFLFLKRHDSPDDPSKATYLPIFRCMSDQTTVSTNHGTGMVTYTSPDLSCELTCVV-GQDRACSIMLQRVVKAVGAMGGSTIICDPFTKG------CRVKEMTLETFIDGGVQTTGCLMSECLP 241
            F L+ +    S    Q  D  P   TC       L P    +  C C  GW GPEC VCT + AC A     ++ +  +  G      E+ LE      G C +T+ A+++ L G   V  +  A G   F F+K     D      Y  +FRC     T   +  T  +  + P   C +TC V G D +C+  +   +  VG  G  T+ C+           C V E  L+ +   GV+   C   EC P
Sbjct:   22 FRLLLVFAFASSYFFQIVDGQPDLGTCAVEGSNPLTPD-PVTNACACRTGWTGPECSVCTASSACQAASDRDNEANSNNVLGTTRMSCERSLEVIEKTHGVCRVTTQAVSNFLQGQAFVTAQITAAGAMHFEFVKVTGERD-----VYASMFRCSGVGCTQVKDPKTNKIQTSCPAAQCNMTCEVGGPDESCTEFVASQIAQVGTKGPVTLTCNDEATAPANGAQCIVHENLLDFYFQ-GVELDDCHFGECAP 267
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BLAST of NO09G00010 vs. NCBI_GenBank
Match: XP_005854367.1 (hypothetical protein NGA_0167501, partial [Nannochloropsis gaditana CCMP526] >XP_005854649.1 hypothetical protein NGA_0167502, partial [Nannochloropsis gaditana CCMP526] >EKU21706.1 hypothetical protein NGA_0167502, partial [Nannochloropsis gaditana CCMP526] >EKU21995.1 hypothetical protein NGA_0167501, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 76.6 bits (187), Expect = 1.300e-10
Identity = 63/255 (24.71%), Postives = 103/255 (40.39%), Query Frame = 0 
Query:    2 ARLSYCFSLVFLPTLLSVLTVQAHDRWPGSLTCPSTTKQVLAPTLNASGLCDCAPGWNGPECGVCTTNDACAAVYGEGSKCSQTSFAGEKKLEGFCEITSPAITDLLHGTGIVQMKYAPGDFSFLFLKRHDSPD----------DPSKATYLPIFRCMSDQTTVSTNH------GTGMVTYTSPDLSCELTCVVGQDRACSIMLQRVVKAVGAMGGSTIICDPFTKGCRVKEMTLETFIDGGVQTTGCLMSECLP 241
            +R+     L+F   LL V+   + D  P       +++  L P+ +A+  C C   W GPEC VCT +  C    G G  C + +    ++LEG C I +    D L G G + ++    D          +PD          +PS   + P+F C   Q  +S         G   V       SC   C   +D  C  ++ +++ ++G  G   +IC+     C + E  L+ +   G+    C + EC P
Sbjct:   14 SRIPIIIHLIFF--LLFVVACSSAD--PPIQCAAQSSEAALPPSEDAA--CVCVDNWTGPECRVCTDDSVC----GSGQLC-RHALPMYQRLEGVCNIFTKGFADFLGGAGTLALQMGMTDSE----GATPAPDAGLLDLTVFANPSPGIFRPVFSCAGRQCLLSKEKDSPGAAGGARVGMQCQQSSCTALCDKAEDAFCIDLMLQLLASIGETGTLDLICEADGDSCVMHEAVLDAYFK-GIVFDECRLGECAP 252
The following BLAST results are available for this feature:
BLAST of NO09G00010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM27831.12.200e-9867.58EGF-like region, conserved site [Nannochloropsis g... [more]
XP_005853422.14.400e-6753.91hypothetical protein NGA_0487310 [Nannochloropsis ... [more]
EWM25738.19.300e-4142.37atp-dependent permease [Nannochloropsis gaditana][more]
EWM27462.15.700e-1427.67putative abc transporter [Nannochloropsis gaditana... [more]
XP_005854367.11.300e-1024.71hypothetical protein NGA_0167501, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G00010.1NO09G00010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100074g17gene2730Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G00010.1NO09G00010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G00010 ID=NO09G00010|Name=NO09G00010|organism=Nannochloropsis oceanica|type=gene|length=3625bp
TTCGTCCCTCATTCGCTTCGCTTGAGAAAGCAACAGACCATATGGTGAAT
ACCAGCGGTATATGTCTAGTGCTTTCCCTCGTTTTGTAGTCTGTGATTCT
ATTGAGTGCCCCAAGTCATACTTTGCCAATTTCCCTGTCACATGCCATTT
TCGTGGCATGCCTATGGTTTGTCGAAGCCCGGCGGCATCACCTCGGGCTG
TTCACCCCGTTGTCCCGTTTGTGCTTCTCTGTTCATCGAAAGCCTTGCGT
AAGACATCTGGCCTCTGCCGGTCACTCTATGAAATAATCTCGCTATGAAA
ATAATTGATAGCAATGCAAGCTTACCTCAACTACTGACCACAGCTCTTCT
TTTCTTTTCCGCCACCCCACCCCACAGCCAGCCTTCTCCCCCTTACTAAA
CCAGAAAAAGCATCAAACATGGCCCGCCTTTCCTACTGCTTTTCTCTTGT
CTTTCTCCCGACCCTCCTGTCCGTCCTGACTGTGCAAGCCCACGACCGGT
GGCCCGGAAGCTTAACGTGCCCCTCGACGACGAAGCAGGTCTTGGCTCCC
ACCCTCAACGCCAGCGGTCTCTGTGACTGCGCCCCCGGGTGGAATGGGCC
TGAGTGCGGTGTTTGCACGACCAATGACGCCTGTGCCGCTGTGTATGGCG
AGGGTTCGAAGTGCTCGCAGACATCTTTTGCCGGGGAGAAGAAACTGgta
cgcactcaccacttacacctgcacctgttttctttgttagggtagtgaga
aaggggccaggatgagttggggatggaaagcgaatgcagaaacccaagga
gaagataaaaggagggtatgaactctaattatatacatgttgaagcgtaa
ggaaaatcaaaaatcagccagtcccattaatgtacactttcttcccccct
tccttccctccaacgcacagGAAGGGTTTTGCGAGATCACCTCGCCCGCT
ATCACCGACCTCCTGCATGGTACGGGCATCGTGCAAATGAAGTATGCCCC
GGGGGACTTCTCGTTCCTTTTTCTCAAGCGTCACGACAGCCCGGACGACC
CGTCCAAGGCCACCTACCTGCCCATCTTCCGCTGTATGTCCGACCAGACC
ACCGTCTCCACCAACCACGGCACGGGCATGGTCACCTACACGTCGCCCGA
CCTCTCTTGTGAGCTGACCTGTGTGGTCGGGCAGGACAGGGCCTGCTCGA
TAATGCTGCAGCGGGTGGTGAAGGCCGTGGGAGCCATGGGAGGGAGCACC
ATTATCTGCGATCCCTTTACCAAGGGCTGCCGAGTTAAGGAGATGACGCT
TGAGACGTTCATCGACGGGGGCGTGCAAACCACCGGCTGCCTGATGAGTG
AATGCTTGCCACCACTTGCCACCCCAGTCATCAAGACCAAGCCTACCCTC
ACTGCTCCTGCGGTGCCTGATGCGGCGGCGCCTGCCCCCCCTAAGGGAAA
GCTGCGTCGTGATGTGTAAGAAGGAAGGGGAAAAGGGGGGGGGGAAAGGG
CAGAAGAGGGGCCTCTAATTTCGTCCTCTGGGGCTGCTTAGGATGCGATG
TGGGGGGGCTGCATCGCATGGACGGATCTGTTGGGATGAGGGAGAGACAT
TAGAAAAACGAAGAGGAGGGAAGATCCTCCCAGGAGGGAGCAAAGGAGGG
ATAAAGGAGAGGCAGTATGTGCAGAGAGGAGGTTATGTGGGTGGTGCACA
CACGCACAAACAAAGTATGAGACGCGCCAAGATTATCATAAGTAGATGAG
CAAGAGAGGATGACAAAGCAAAAGCCGCGTACAAACAGCTGGGACGCGAA
CGAGAGGCAGGCACACCACCACCACCACCACCATCATCACCACACACAAT
GAGAAACAGCATGGAAAAAAGGAAGAAATTAGACAATCCATTTTCAGGGT
AGCATCGTTGCATTTGTCCTCTTTCCTATCCTTGTTTATTTTTCTCGCTT
TTTGGTTGTTCCGTTGCGTTTCAGCTGTCTGCCTCTTTCCCTTTCCCTCT
CTTATTCCTTCTCCCTACCTGTTGCTTCATTCATTCATCTCCTCCCTCTT
TCTTCTCCTCTCCGCCGCCATTCCCGTTCTCCCCCTCCTCCTTGTCCTCT
TTAGCTTTCTCCACTCCCTTTGTTGATGTTTCGGATAAATCAGCGGCAGC
TGTTGCTTCTGCTGCTACTACTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTACTTCTGCTGCTTCTTTTTCCGCCTCTTTCTCCAACTCCTCC
GCGGCCTCCAAAGCGAGGCGGTCGGATCGGCGCTTCTTGACGGCGTCGGA
TACTTCCTTGGCAACCTGAGGGAGGGTAGGAGAGAGAGAAGGAGGGTGGT
AAGGAGGGAGGGAGAAAGGGAAAGTGCAAGGGAGAGAAAAGGTTGGATTT
GCTAGCTTTGAAGGTCCAACAAAATAGGAACGAAGGAAAAGGAAAAGGGG
GGGGAGAAAGGAAGGGCAGGGGACGAACCTTTTCGACCTCGGCGATGGAG
TCGGCAGGCACGCGGTGAATGAGCTCGCCTGCCAGGAAGAGGATGAAGAA
AGGAGCGAGAAGGGTGAGAAGCAAAGTGGTGATGGTGAAGGCATGACTAA
TCCGTGACGCGCCATTCTCCTTCCCTCTCCCTGTCCCTTCGTCCCTTCCT
TCCTAGTCTCAACACAAGCCAAAAAAGTTGTGCTCCCTGTTCCGTCTTCT
TTTCCTCCCTCGCTCCCTCCCTCCTTACCGTCCTGTGCCTGCAAGCCCGA
GGAATAGTCCTTCTCGATGGCCCCCAGGAGCTTCCATTCCTGGGAGGGAA
GGAGGGAGGGAGGAAGGGAGGACGAGGCGGTGAGATGACAAGGCAGGATC
CATGGAAAGGAGGAAGAGGAGAGGAGAGGAATCAGAGCGGAAGAAAAGGA
GGACGAGGCCATGAGGTCATGCACAACAAGAAATCAGGAAAAAGTGAGCA
AGGAGAGTAGGGAAGGAAGCAGAAATCAAAAGGAGGGAGACGGGGGTGTA
CCTCCCTGTTGCCGATCAAGGAGACGGCGATTCCCTCCGCGCCGAAGCGG
CCAGTGCGACCGACGCGATGGATGTAAGTCTCAGGGGCCCTGGTGGTGTA
TGAGTGATCGCATGGGATGTATAATTATTTGGATTGAATGCACTAGATGT
ATGGTAATTCGCATATCGTGTATGATCACTTGCATGAGATGTACGACTAT
TCGCGAGGGGTGCATTCCTTTCTTGCTCTGTGGAAGAACGTGGTGGAATC
CCTCCCTCCTTGACCCTCCCTCCCTCCTTATCTTTTACCCTTCCTCCCTC
CCTCCTTACCCCGTATCCGTGAAGCTCCCCTCCTCGTCACTCCGGGCCAC
GCGCGGTTGGAAAGGCATGTCAAAATTCACGACCCACGCTATGCCTAGGT
AGGTAGAGAGGTGGGTAGGTAGGAGTGGAAGGAAGGAGGGAGGGACGTCG
GGATGTGGCAACAAAACCCTCTTCTCTACTGTCAGTGATTCTTCTGCCAC
CTCAGGCCAACGTCATTCCGTCTGTTGCTTCTAATCCTTTTATCTCCCTC
CCTCCCTCCCTCCGTATCTCCCTCCCTCCCTCCCTCCGTATCTCCCTCCC
TACCTTCCACGTCAATGCCCCGGGA
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protein sequence of NO09G00010.1

>NO09G00010.1-protein ID=NO09G00010.1-protein|Name=NO09G00010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MARLSYCFSLVFLPTLLSVLTVQAHDRWPGSLTCPSTTKQVLAPTLNASG
LCDCAPGWNGPECGVCTTNDACAAVYGEGSKCSQTSFAGEKKLEGFCEIT
SPAITDLLHGTGIVQMKYAPGDFSFLFLKRHDSPDDPSKATYLPIFRCMS
DQTTVSTNHGTGMVTYTSPDLSCELTCVVGQDRACSIMLQRVVKAVGAMG
GSTIICDPFTKGCRVKEMTLETFIDGGVQTTGCLMSECLPPLATPVIKTK
PTLTAPAVPDAAAPAPPKGKLRRDV*
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Synonyms
Publications