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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:464..4088 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G00010.1 vs.
Match: EWM27831.1 (EGF-like region, conserved site [Nannochloropsis gaditana]) HSP 1 Score: 373.2 bits (957), Expect = 6.800e-100 Identity = 181/273 (66.30%), Postives = 217/273 (79.49%), Query Frame = 0
Query: 1 MARLSYCFSLVFLPTLLSVLTVQAHDRWPGSLTCPSTTKQVLAPTLNASGLCDCAPGWNGPECGVCTTNDACAAVYGEGSKCSQTSFAGEKKLEGFCEITSPAITDLLHGTGIVQMKYAPGDFSFLFLKRHDSPDDPSKATYLPIFRCMSDQTTVSTNHGTGMVTYTSPDLSCELTCVVGQDRACSIMLQRVVKAVGAMGGSTIICDPFTKGCRVKEMTLETFIDGGVQTTGCLMSECLPPLATPVIKTKPTLTAPAVPDAAAPAPPKGKLRR 274
MARL +L+ + LL +L V H+ WPGS TCP T Q L+P +NASG+CDCA GW GPECG+CT+++ACA++ GEGS+C+QTSFAGEKKL GFCEIT+PAITDLLHGTG VQMK+ PGDFSFLF+KRHD+P DP+ ATYLPIFRC SD+TTV TNHGTG VTYTSPDLSC LTCVVG+DR+C+ +L+RVVK VG++GGSTIICDPFTK C VKE+TL+TFI GGV+T C +SECL P+ KT P L P+VP AAP P + R
Sbjct: 21 MARLFSSSALLLISALLPLLDVGGHEAWPGSFTCPPT--QTLSPRVNASGVCDCAAGWVGPECGICTSDEACASIEGEGSRCAQTSFAGEKKLAGFCEITTPAITDLLHGTGFVQMKFEPGDFSFLFIKRHDNPTDPALATYLPIFRCQSDRTTVKTNHGTGAVTYTSPDLSCALTCVVGEDRSCTSILERVVKTVGSLGGSTIICDPFTKACAVKEITLDTFIAGGVKTANCQVSECLAPVPLVSPKTTP-LQPPSVP--AAPTAPAAPITR 288
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G00010.1 ID=NO09G00010.1|Name=NO09G00010.1|organism=Nannochloropsis oceanica|type=mRNA|length=3402bp TTCGTCCCTCATTCGCTTCGCTTGAGAAAGCAACAGACCATATGGTGAAT ACCAGCGGTATATGTCTAGTGCTTTCCCTCGTTTTGTAGTCTGTGATTCT ATTGAGTGCCCCAAGTCATACTTTGCCAATTTCCCTGTCACATGCCATTT TCGTGGCATGCCTATGGTTTGTCGAAGCCCGGCGGCATCACCTCGGGCTG TTCACCCCGTTGTCCCGTTTGTGCTTCTCTGTTCATCGAAAGCCTTGCGT AAGACATCTGGCCTCTGCCGGTCACTCTATGAAATAATCTCGCTATGAAA ATAATTGATAGCAATGCAAGCTTACCTCAACTACTGACCACAGCTCTTCT TTTCTTTTCCGCCACCCCACCCCACAGCCAGCCTTCTCCCCCTTACTAAA CCAGAAAAAGCATCAAACATGGCCCGCCTTTCCTACTGCTTTTCTCTTGT CTTTCTCCCGACCCTCCTGTCCGTCCTGACTGTGCAAGCCCACGACCGGT GGCCCGGAAGCTTAACGTGCCCCTCGACGACGAAGCAGGTCTTGGCTCCC ACCCTCAACGCCAGCGGTCTCTGTGACTGCGCCCCCGGGTGGAATGGGCC TGAGTGCGGTGTTTGCACGACCAATGACGCCTGTGCCGCTGTGTATGGCG AGGGTTCGAAGTGCTCGCAGACATCTTTTGCCGGGGAGAAGAAACTGGAA GGGTTTTGCGAGATCACCTCGCCCGCTATCACCGACCTCCTGCATGGTAC GGGCATCGTGCAAATGAAGTATGCCCCGGGGGACTTCTCGTTCCTTTTTC TCAAGCGTCACGACAGCCCGGACGACCCGTCCAAGGCCACCTACCTGCCC ATCTTCCGCTGTATGTCCGACCAGACCACCGTCTCCACCAACCACGGCAC GGGCATGGTCACCTACACGTCGCCCGACCTCTCTTGTGAGCTGACCTGTG TGGTCGGGCAGGACAGGGCCTGCTCGATAATGCTGCAGCGGGTGGTGAAG GCCGTGGGAGCCATGGGAGGGAGCACCATTATCTGCGATCCCTTTACCAA GGGCTGCCGAGTTAAGGAGATGACGCTTGAGACGTTCATCGACGGGGGCG TGCAAACCACCGGCTGCCTGATGAGTGAATGCTTGCCACCACTTGCCACC CCAGTCATCAAGACCAAGCCTACCCTCACTGCTCCTGCGGTGCCTGATGC GGCGGCGCCTGCCCCCCCTAAGGGAAAGCTGCGTCGTGATGTGTAAGAAG GAAGGGGAAAAGGGGGGGGGGAAAGGGCAGAAGAGGGGCCTCTAATTTCG TCCTCTGGGGCTGCTTAGGATGCGATGTGGGGGGGCTGCATCGCATGGAC GGATCTGTTGGGATGAGGGAGAGACATTAGAAAAACGAAGAGGAGGGAAG ATCCTCCCAGGAGGGAGCAAAGGAGGGATAAAGGAGAGGCAGTATGTGCA GAGAGGAGGTTATGTGGGTGGTGCACACACGCACAAACAAAGTATGAGAC GCGCCAAGATTATCATAAGTAGATGAGCAAGAGAGGATGACAAAGCAAAA GCCGCGTACAAACAGCTGGGACGCGAACGAGAGGCAGGCACACCACCACC ACCACCACCATCATCACCACACACAATGAGAAACAGCATGGAAAAAAGGA AGAAATTAGACAATCCATTTTCAGGGTAGCATCGTTGCATTTGTCCTCTT TCCTATCCTTGTTTATTTTTCTCGCTTTTTGGTTGTTCCGTTGCGTTTCA GCTGTCTGCCTCTTTCCCTTTCCCTCTCTTATTCCTTCTCCCTACCTGTT GCTTCATTCATTCATCTCCTCCCTCTTTCTTCTCCTCTCCGCCGCCATTC CCGTTCTCCCCCTCCTCCTTGTCCTCTTTAGCTTTCTCCACTCCCTTTGT TGATGTTTCGGATAAATCAGCGGCAGCTGTTGCTTCTGCTGCTACTACTG CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACTTCTGCTGCTTCT TTTTCCGCCTCTTTCTCCAACTCCTCCGCGGCCTCCAAAGCGAGGCGGTC GGATCGGCGCTTCTTGACGGCGTCGGATACTTCCTTGGCAACCTGAGGGA GGGTAGGAGAGAGAGAAGGAGGGTGGTAAGGAGGGAGGGAGAAAGGGAAA GTGCAAGGGAGAGAAAAGGTTGGATTTGCTAGCTTTGAAGGTCCAACAAA ATAGGAACGAAGGAAAAGGAAAAGGGGGGGGAGAAAGGAAGGGCAGGGGA CGAACCTTTTCGACCTCGGCGATGGAGTCGGCAGGCACGCGGTGAATGAG CTCGCCTGCCAGGAAGAGGATGAAGAAAGGAGCGAGAAGGGTGAGAAGCA AAGTGGTGATGGTGAAGGCATGACTAATCCGTGACGCGCCATTCTCCTTC CCTCTCCCTGTCCCTTCGTCCCTTCCTTCCTAGTCTCAACACAAGCCAAA AAAGTTGTGCTCCCTGTTCCGTCTTCTTTTCCTCCCTCGCTCCCTCCCTC CTTACCGTCCTGTGCCTGCAAGCCCGAGGAATAGTCCTTCTCGATGGCCC CCAGGAGCTTCCATTCCTGGGAGGGAAGGAGGGAGGGAGGAAGGGAGGAC GAGGCGGTGAGATGACAAGGCAGGATCCATGGAAAGGAGGAAGAGGAGAG GAGAGGAATCAGAGCGGAAGAAAAGGAGGACGAGGCCATGAGGTCATGCA CAACAAGAAATCAGGAAAAAGTGAGCAAGGAGAGTAGGGAAGGAAGCAGA AATCAAAAGGAGGGAGACGGGGGTGTACCTCCCTGTTGCCGATCAAGGAG ACGGCGATTCCCTCCGCGCCGAAGCGGCCAGTGCGACCGACGCGATGGAT GTAAGTCTCAGGGGCCCTGGTGGTGTATGAGTGATCGCATGGGATGTATA ATTATTTGGATTGAATGCACTAGATGTATGGTAATTCGCATATCGTGTAT GATCACTTGCATGAGATGTACGACTATTCGCGAGGGGTGCATTCCTTTCT TGCTCTGTGGAAGAACGTGGTGGAATCCCTCCCTCCTTGACCCTCCCTCC CTCCTTATCTTTTACCCTTCCTCCCTCCCTCCTTACCCCGTATCCGTGAA GCTCCCCTCCTCGTCACTCCGGGCCACGCGCGGTTGGAAAGGCATGTCAA AATTCACGACCCACGCTATGCCTAGGTAGGTAGAGAGGTGGGTAGGTAGG AGTGGAAGGAAGGAGGGAGGGACGTCGGGATGTGGCAACAAAACCCTCTT CTCTACTGTCAGTGATTCTTCTGCCACCTCAGGCCAACGTCATTCCGTCT GTTGCTTCTAATCCTTTTATCTCCCTCCCTCCCTCCCTCCGTATCTCCCT CCCTCCCTCCCTCCGTATCTCCCTCCCTACCTTCCACGTCAATGCCCCGG GA back to topprotein sequence of NO09G00010.1 >NO09G00010.1-protein ID=NO09G00010.1-protein|Name=NO09G00010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp MARLSYCFSLVFLPTLLSVLTVQAHDRWPGSLTCPSTTKQVLAPTLNASG LCDCAPGWNGPECGVCTTNDACAAVYGEGSKCSQTSFAGEKKLEGFCEIT SPAITDLLHGTGIVQMKYAPGDFSFLFLKRHDSPDDPSKATYLPIFRCMS DQTTVSTNHGTGMVTYTSPDLSCELTCVVGQDRACSIMLQRVVKAVGAMG GSTIICDPFTKGCRVKEMTLETFIDGGVQTTGCLMSECLPPLATPVIKTK PTLTAPAVPDAAAPAPPKGKLRRDV* back to topmRNA from alignment at chr9:464..4088+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G00010.1 ID=NO09G00010.1|Name=NO09G00010.1|organism=Nannochloropsis oceanica|type=mRNA|length=3625bp|location=Sequence derived from alignment at chr9:464..4088+ (Nannochloropsis oceanica) TTCGTCCCTCATTCGCTTCGCTTGAGAAAGCAACAGACCATATGGTGAAT
ACCAGCGGTATATGTCTAGTGCTTTCCCTCGTTTTGTAGTCTGTGATTCT
ATTGAGTGCCCCAAGTCATACTTTGCCAATTTCCCTGTCACATGCCATTT
TCGTGGCATGCCTATGGTTTGTCGAAGCCCGGCGGCATCACCTCGGGCTG
TTCACCCCGTTGTCCCGTTTGTGCTTCTCTGTTCATCGAAAGCCTTGCGT
AAGACATCTGGCCTCTGCCGGTCACTCTATGAAATAATCTCGCTATGAAA
ATAATTGATAGCAATGCAAGCTTACCTCAACTACTGACCACAGCTCTTCT
TTTCTTTTCCGCCACCCCACCCCACAGCCAGCCTTCTCCCCCTTACTAAA
CCAGAAAAAGCATCAAACATGGCCCGCCTTTCCTACTGCTTTTCTCTTGT
CTTTCTCCCGACCCTCCTGTCCGTCCTGACTGTGCAAGCCCACGACCGGT
GGCCCGGAAGCTTAACGTGCCCCTCGACGACGAAGCAGGTCTTGGCTCCC
ACCCTCAACGCCAGCGGTCTCTGTGACTGCGCCCCCGGGTGGAATGGGCC
TGAGTGCGGTGTTTGCACGACCAATGACGCCTGTGCCGCTGTGTATGGCG
AGGGTTCGAAGTGCTCGCAGACATCTTTTGCCGGGGAGAAGAAACTGGTA
CGCACTCACCACTTACACCTGCACCTGTTTTCTTTGTTAGGGTAGTGAGA
AAGGGGCCAGGATGAGTTGGGGATGGAAAGCGAATGCAGAAACCCAAGGA
GAAGATAAAAGGAGGGTATGAACTCTAATTATATACATGTTGAAGCGTAA
GGAAAATCAAAAATCAGCCAGTCCCATTAATGTACACTTTCTTCCCCCCT
TCCTTCCCTCCAACGCACAGGAAGGGTTTTGCGAGATCACCTCGCCCGCT
ATCACCGACCTCCTGCATGGTACGGGCATCGTGCAAATGAAGTATGCCCC
GGGGGACTTCTCGTTCCTTTTTCTCAAGCGTCACGACAGCCCGGACGACC
CGTCCAAGGCCACCTACCTGCCCATCTTCCGCTGTATGTCCGACCAGACC
ACCGTCTCCACCAACCACGGCACGGGCATGGTCACCTACACGTCGCCCGA
CCTCTCTTGTGAGCTGACCTGTGTGGTCGGGCAGGACAGGGCCTGCTCGA
TAATGCTGCAGCGGGTGGTGAAGGCCGTGGGAGCCATGGGAGGGAGCACC
ATTATCTGCGATCCCTTTACCAAGGGCTGCCGAGTTAAGGAGATGACGCT
TGAGACGTTCATCGACGGGGGCGTGCAAACCACCGGCTGCCTGATGAGTG
AATGCTTGCCACCACTTGCCACCCCAGTCATCAAGACCAAGCCTACCCTC
ACTGCTCCTGCGGTGCCTGATGCGGCGGCGCCTGCCCCCCCTAAGGGAAA
GCTGCGTCGTGATGTGTAAGAAGGAAGGGGAAAAGGGGGGGGGGAAAGGG
CAGAAGAGGGGCCTCTAATTTCGTCCTCTGGGGCTGCTTAGGATGCGATG
TGGGGGGGCTGCATCGCATGGACGGATCTGTTGGGATGAGGGAGAGACAT
TAGAAAAACGAAGAGGAGGGAAGATCCTCCCAGGAGGGAGCAAAGGAGGG
ATAAAGGAGAGGCAGTATGTGCAGAGAGGAGGTTATGTGGGTGGTGCACA
CACGCACAAACAAAGTATGAGACGCGCCAAGATTATCATAAGTAGATGAG
CAAGAGAGGATGACAAAGCAAAAGCCGCGTACAAACAGCTGGGACGCGAA
CGAGAGGCAGGCACACCACCACCACCACCACCATCATCACCACACACAAT
GAGAAACAGCATGGAAAAAAGGAAGAAATTAGACAATCCATTTTCAGGGT
AGCATCGTTGCATTTGTCCTCTTTCCTATCCTTGTTTATTTTTCTCGCTT
TTTGGTTGTTCCGTTGCGTTTCAGCTGTCTGCCTCTTTCCCTTTCCCTCT
CTTATTCCTTCTCCCTACCTGTTGCTTCATTCATTCATCTCCTCCCTCTT
TCTTCTCCTCTCCGCCGCCATTCCCGTTCTCCCCCTCCTCCTTGTCCTCT
TTAGCTTTCTCCACTCCCTTTGTTGATGTTTCGGATAAATCAGCGGCAGC
TGTTGCTTCTGCTGCTACTACTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTACTTCTGCTGCTTCTTTTTCCGCCTCTTTCTCCAACTCCTCC
GCGGCCTCCAAAGCGAGGCGGTCGGATCGGCGCTTCTTGACGGCGTCGGA
TACTTCCTTGGCAACCTGAGGGAGGGTAGGAGAGAGAGAAGGAGGGTGGT
AAGGAGGGAGGGAGAAAGGGAAAGTGCAAGGGAGAGAAAAGGTTGGATTT
GCTAGCTTTGAAGGTCCAACAAAATAGGAACGAAGGAAAAGGAAAAGGGG
GGGGAGAAAGGAAGGGCAGGGGACGAACCTTTTCGACCTCGGCGATGGAG
TCGGCAGGCACGCGGTGAATGAGCTCGCCTGCCAGGAAGAGGATGAAGAA
AGGAGCGAGAAGGGTGAGAAGCAAAGTGGTGATGGTGAAGGCATGACTAA
TCCGTGACGCGCCATTCTCCTTCCCTCTCCCTGTCCCTTCGTCCCTTCCT
TCCTAGTCTCAACACAAGCCAAAAAAGTTGTGCTCCCTGTTCCGTCTTCT
TTTCCTCCCTCGCTCCCTCCCTCCTTACCGTCCTGTGCCTGCAAGCCCGA
GGAATAGTCCTTCTCGATGGCCCCCAGGAGCTTCCATTCCTGGGAGGGAA
GGAGGGAGGGAGGAAGGGAGGACGAGGCGGTGAGATGACAAGGCAGGATC
CATGGAAAGGAGGAAGAGGAGAGGAGAGGAATCAGAGCGGAAGAAAAGGA
GGACGAGGCCATGAGGTCATGCACAACAAGAAATCAGGAAAAAGTGAGCA
AGGAGAGTAGGGAAGGAAGCAGAAATCAAAAGGAGGGAGACGGGGGTGTA
CCTCCCTGTTGCCGATCAAGGAGACGGCGATTCCCTCCGCGCCGAAGCGG
CCAGTGCGACCGACGCGATGGATGTAAGTCTCAGGGGCCCTGGTGGTGTA
TGAGTGATCGCATGGGATGTATAATTATTTGGATTGAATGCACTAGATGT
ATGGTAATTCGCATATCGTGTATGATCACTTGCATGAGATGTACGACTAT
TCGCGAGGGGTGCATTCCTTTCTTGCTCTGTGGAAGAACGTGGTGGAATC
CCTCCCTCCTTGACCCTCCCTCCCTCCTTATCTTTTACCCTTCCTCCCTC
CCTCCTTACCCCGTATCCGTGAAGCTCCCCTCCTCGTCACTCCGGGCCAC
GCGCGGTTGGAAAGGCATGTCAAAATTCACGACCCACGCTATGCCTAGGT
AGGTAGAGAGGTGGGTAGGTAGGAGTGGAAGGAAGGAGGGAGGGACGTCG
GGATGTGGCAACAAAACCCTCTTCTCTACTGTCAGTGATTCTTCTGCCAC
CTCAGGCCAACGTCATTCCGTCTGTTGCTTCTAATCCTTTTATCTCCCTC
CCTCCCTCCCTCCGTATCTCCCTCCCTCCCTCCCTCCGTATCTCCCTCCC
TACCTTCCACGTCAATGCCCCGGGA back to topCoding sequence (CDS) from alignment at chr9:464..4088+ >NO09G00010.1 ID=NO09G00010.1|Name=NO09G00010.1|organism=Nannochloropsis oceanica|type=CDS|length=828bp|location=Sequence derived from alignment at chr9:464..4088+ (Nannochloropsis oceanica) ATGGCCCGCCTTTCCTACTGCTTTTCTCTTGTCTTTCTCCCGACCCTCCT GTCCGTCCTGACTGTGCAAGCCCACGACCGGTGGCCCGGAAGCTTAACGT GCCCCTCGACGACGAAGCAGGTCTTGGCTCCCACCCTCAACGCCAGCGGT CTCTGTGACTGCGCCCCCGGGTGGAATGGGCCTGAGTGCGGTGTTTGCAC GACCAATGACGCCTGTGCCGCTGTGTATGGCGAGGGTTCGAAGTGCTCGC AGACATCTTTTGCCGGGGAGAAGAAACTGGAAGGGTTTTGCGAGATCACC TCGCCCGCTATCACCGACCTCCTGCATGGTACGGGCATCGTGCAAATGAA GTATGCCCCGGGGGACTTCTCGTTCCTTTTTCTCAAGCGTCACGACAGCC CGGACGACCCGTCCAAGGCCACCTACCTGCCCATCTTCCGCTGTATGTCC GACCAGACCACCGTCTCCACCAACCACGGCACGGGCATGGTCACCTACAC GTCGCCCGACCTCTCTTGTGAGCTGACCTGTGTGGTCGGGCAGGACAGGG CCTGCTCGATAATGCTGCAGCGGGTGGTGAAGGCCGTGGGAGCCATGGGA GGGAGCACCATTATCTGCGATCCCTTTACCAAGGGCTGCCGAGTTAAGGA GATGACGCTTGAGACGTTCATCGACGGGGGCGTGCAAACCACCGGCTGCC TGATGAGTGAATGCTTGCCACCACTTGCCACCCCAGTCATCAAGACCAAG CCTACCCTCACTGCTCCTGCGGTGCCTGATGCGGCGGCGCCTGCCCCCCC TAAGGGAAAGCTGCGTCGTGATGTGTAA back to top
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